HHsearch alignment for GI: 254780952 and conserved domain: PRK05298
>PRK05298 excinuclease ABC subunit B; Provisional.
Probab=94.23 E-value=0.31 Score=27.26 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=37.7
Q ss_pred CCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 74488731553100000000136665311365303111010014788998752023320320
Q gi|254780952|r 342 AKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVI 403 (685)
Q Consensus 342 ~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~ 403 (685)
T Consensus 421 P~ievrp~~~---Qiddl~~ei~~~~~~~er---~LvttlTkkmaEdLt~yl~~~~ik~~Yl 476 (657)
T PRK05298 421 PEIEVRPTKG---QVDDLLSEIRKRVAKGER---VLVTTLTKRMAEDLTDYLKELGIKVRYL 476 (657)
T ss_pred CCEEEECCCC---CHHHHHHHHHHHHHCCCE---EEEEECHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8459964878---799999999999636976---9999545989999999999679807996