HHsearch alignment for GI: 254780952 and conserved domain: PRK05580

Probab=97.60  E-value=0.00042  Score=46.89  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=61.3

Q ss_pred             HCCCHHHHHHHHCC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf             62998899998538----98966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r   28 KGLNAQQTHAVTIP----DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI  103 (685)
Q Consensus        28 ~~Ln~~Q~~av~~~----~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~  103 (685)
T Consensus       167 ~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~~l~~G----kqvLiLvPEI~lt~q~~~rl~~~fg~--  240 (699)
T PRK05580        167 PTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAEALAQG----KQALVLVPEIALTPQLLARFRARFGA--  240 (699)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC----CCEEEEECCHHHHHHHHHHHHHHHCC--
T ss_conf             788999999999998558887178747898607999999999999739----97899917678789999999987099--


Q ss_pred             CEEEEHHHH
Q ss_conf             789617899
Q gi|254780952|r  104 PRIQTFHSF  112 (685)
Q Consensus       104 ~~i~T~Hsf  112 (685)
T Consensus       241 -~v~v~HS~  248 (699)
T PRK05580        241 -RVAVLHSG  248 (699)
T ss_pred             -CEEEECCC
T ss_conf             -57996488