HHsearch alignment for GI: 254780952 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.

Probab=97.23  E-value=0.0076  Score=38.27  Aligned_cols=66  Identities=26%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             CHHHHHHHH-----CCCCCCEEEEECCCCCHHHHHHHHHHHHHHC---CCCCHHHEEEEEECHHHHHHHHHH----HHHH
Q ss_conf             988999985-----3898966999588988358999999999980---899978867621147999999999----9985
Q gi|254780952|r   31 NAQQTHAVT-----IPDDTPLLILAGAGTGKTTVLIARMLHLICH---KEIPPSKILAMTFTNQAIQEMKNR----LACY   98 (685)
Q Consensus        31 n~~Q~~av~-----~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~---~~~~p~~Il~iTFT~~AA~el~~R----i~~~   98 (685)
T Consensus       260 R~~Q~~ma~~V~~al~~~~~l~iEApTGtGKTl------aYLlPai~~A~~~~~~vvIST~T~~LQ~QL~~kdlp~L~~~  333 (932)
T PRK08074        260 REGQQEMMKEVYTALRDSRHALIEAGTGTGKTL------AYLLPAAYFAKKKEEPVIISTYTVQLQQQLLEKDIPLLQKI  333 (932)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH------HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf             878999999999998538847998688887136------87999999999759909999162889999998689999997


Q ss_pred             CCCC
Q ss_conf             1645
Q gi|254780952|r   99 LGEK  102 (685)
Q Consensus        99 l~~~  102 (685)
T Consensus       334 l~~~  337 (932)
T PRK08074        334 FPFP  337 (932)
T ss_pred             HCCC
T ss_conf             1998