HHsearch alignment for GI: 254780952 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=94.17 E-value=0.27 Score=27.63 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEEC
Q ss_conf 36832158887629988999985389896699958898835899999999998089997886762114
Q gi|254780952|r 17 DFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 (685)
Q Consensus 17 ~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT 84 (685)
T Consensus 23 nFi~g~n~~~~~al---~-~~~~~~~~~~l~l~G~~G~GKTHLLqA-~~~~~~~~~---~~~~yl~~~ 82 (235)
T PRK08084 23 SFYPGDNDSLLAAL---Q-NVLRQEHSGYIYLWGREGAGRSHLLHA-ACAELSQRG---DAVGYVPLD 82 (235)
T ss_pred CCCCCCCHHHHHHH---H-HHHHCCCCCEEEEECCCCCCHHHHHHH-HHHHHHCCC---CCEEEEEHH
T ss_conf 23448869999999---9-998578987699989999888999999-999997079---857998779