HHsearch alignment for GI: 254780952 and conserved domain: PRK10876
>PRK10876 recB exonuclease V subunit beta; Provisional.
Probab=100.00 E-value=0 Score=710.98 Aligned_cols=559 Identities=20% Similarity=0.319 Sum_probs=365.2
Q ss_pred HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHH--------CCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC--------
Q ss_conf 85389896699958898835899999999998--------08999788676211479999999999985164--------
Q gi|254780952|r 38 VTIPDDTPLLILAGAGTGKTTVLIARMLHLIC--------HKEIPPSKILAMTFTNQAIQEMKNRLACYLGE-------- 101 (685)
Q Consensus 38 v~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~--------~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~-------- 101 (685)
T Consensus 11 ~~~pL~G~~LVeASAGTGKT~~La~l~lRLll~~~~~~~~~~pl~id~ILvVTFT~aAA~EMk~RIr~~L~~~~~a~~~~ 90 (1181)
T PRK10876 11 LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRE 90 (1181)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 88898999798871536678999999999986244554567999828198965678999999999999999999987505
Q ss_pred -------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf -------------------------------58789617899999999849984879898072899999999999997--
Q gi|254780952|r 102 -------------------------------KIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKD-- 148 (685)
Q Consensus 102 -------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~-- 148 (685)
T Consensus 91 ~~~dp~~~~ll~~~~d~~~~~~~L~~a~~~ld~A~I~TIHsFC~riLr~~a~e~g~~~~~~l~~de~~--l~~~~~~d~w 168 (1181)
T PRK10876 91 TTDNPLYARLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESL--LRYQACADFW 168 (1181)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCHHHCCCCCCCCCCCCHHH--HHHHHHHHHH
T ss_conf 66888999999858678999999999983558888870999999999869996199953356478799--9999999999
Q ss_pred --------------------------------CCCC-----CCCCCH-------HHHHHHHHHHH---------------
Q ss_conf --------------------------------3998-----547898-------99999986675---------------
Q gi|254780952|r 149 --------------------------------LQID-----DKDYDP-------HEVIEKIDYWQ--------------- 169 (685)
Q Consensus 149 --------------------------------~~~~-----~~~~~~-------~~~~~~i~~~k--------------- 169 (685)
T Consensus 169 r~~~~~l~~~~~~~~~~~~~~p~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 248 (1181)
T PRK10876 169 RRHCYPLPREIAQVVFEEWKGPEALLRDINRYLQGEAPVIKAPPPDDETLASRHEQIVARIDAVKQQWRDAVGELDALIE 248 (1181)
T ss_pred HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98603388999999998533999999999998615625334898533689999999999999999999999999999998
Q ss_pred HCCC-----------------------------CHHHHHHC------------CCCHHH---------------------
Q ss_conf 4158-----------------------------96461211------------465389---------------------
Q gi|254780952|r 170 NRGW-----------------------------NPKDIPQS------------SLTEDA--------------------- 187 (685)
Q Consensus 170 ~~~~-----------------------------~~~~~~~~------------~~~~~~--------------------- 187 (685)
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~l~~~~k~~~~~~~~~l~~~~~~l~~~~~~l~~~~l 328 (1181)
T PRK10876 249 SSGIDRRKYNRKNQPKWIEKISAWAEEETNSYQLPEALEKFSQRFLEERTKAGGETPRHPLFEAIDQLLAEPLSLRDLVI 328 (1181)
T ss_pred HCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48765222040216999999999874513452154899999999999976547886136999999999971876999999
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC---HHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -99999999755777753001110001245430120---68897401221025321077511346887877511112678
Q gi|254780952|r 188 -EIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHH---PHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQ 263 (685)
Q Consensus 188 -~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~---~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~ 263 (685)
T Consensus 329 ~~~l~~~~~~~~~~K~~~~~ldF~DLl~~l~~~L~~~~~~~la~~l~~ry~~iLIDEFQDTd~~Q~~I~~~l~~~~---~ 405 (1181)
T PRK10876 329 TRALAEIRETVAQEKRRRGELGFDDMLSRLDSALRSESGEALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWGHQ---P 405 (1181)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEHHHCCCCHHHHHHHHHHHCCC---C
T ss_conf 9999999999999999818988799999999986468769999999851856440232048899999999996479---9
Q ss_pred CCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH-----CCH-HHHHHC-
Q ss_conf 8759999530688631133220134554205766406787612675146787520244434320-----101-222210-
Q gi|254780952|r 264 GARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQR-----FDK-KLFTQR- 336 (685)
Q Consensus 264 ~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r-----~~k-~l~~~~- 336 (685)
T Consensus 406 ~~~LfmVGDpKQSIY~FRgADi~~yl~a~~~~~--~~~~L~~NfRS~~~vv~~vN~lF~~~~~~f~~~~i~~~~v~~~~~ 483 (1181)
T PRK10876 406 ETALLLIGDPKQAIYAFRGADIFTYMKARSEVS--AHYTLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGK 483 (1181)
T ss_pred CCCEEEEECCHHHHHHCCCCCHHHHHHHHHCCC--CEEECCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCC
T ss_conf 881699826436655225678999998632435--535887688994799999999997165302104677643554444
Q ss_pred --------CCCCCCCEEEEECCCC--------CHHCCCCCHHHHHHHHHC---------------CCCCHHHHEECCCHH
Q ss_conf --------2355674488731553--------100000000136665311---------------365303111010014
Q gi|254780952|r 337 --------DCHDDAKVSIHVSQSD--------NSELSTIIQEIINIQNTG---------------MSLNNIAILVRTSWQ 385 (685)
Q Consensus 337 --------~~~~~~~v~~~~~~~~--------~~Ea~~Ia~~I~~l~~~g---------------~~~~diAVL~Rtn~~ 385 (685)
T Consensus 484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~A~~I~~lL~~~~~~~~~~~~~~~~Rpl~~~DIaILvRs~~~ 563 (1181)
T PRK10876 484 NQALRFVVKGETQPAMKFWLMEGESCGVGDYQQTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 (1181)
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEECCCHH
T ss_conf 54544145788875300112687654601489999999999999998532334045414676576772116888446146
Q ss_pred HHHHHHHHHCCCCCEE-EEC-CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 7889987520233203-203-31000112102899999884663024575304687546502466888878877398468
Q gi|254780952|r 386 TRKFEDAFLEQEIPHK-VIG-GSFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLL 463 (685)
Q Consensus 386 ~~~l~~~L~~~gIP~~-~~g-~~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~ 463 (685)
T Consensus 564 a~~i~~aL~~~gIPsv~~s~~~~~f~s~Ea~~ll~lL~al~~P~~d~~L~a~L~Spl~g~~~~eL~~l~~~-----e~~~ 638 (1181)
T PRK10876 564 AALIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWLLQAVLAPERENTLRSALATSMMGLNALDIETLNND-----ERAW 638 (1181)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHCC-----HHHH
T ss_conf 99999999976997387247741111399999999999985979729999998366459799999988516-----3789
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHH---HHHH
Q ss_conf 9997641046799778543343433356665310246602223334777096678850688455898884399---9999
Q gi|254780952|r 464 QASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLR---ELLS 540 (685)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~---~l~~ 540 (685)
T Consensus 639 ~~~--------------------~~~f~~~~~~w~~~g~l~~l~~l~~~~~~~~~ll~~~~---gerrl~nl~~l~ellq 695 (1181)
T PRK10876 639 DAV--------------------VEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAG---GERRLTDILHISELLQ 695 (1181)
T ss_pred HHH--------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
T ss_conf 999--------------------99999999999975599999999997109999985867---3689999999999999
Q ss_pred HHH-HCCCHHHHHHHHHH---HHH------HHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCC-----CCCCHH----
Q ss_conf 983-02688999997576---542------21115458936999611345566983698468576-----684221----
Q gi|254780952|r 541 IIE-KHETLEGFVLQAPL---REN------LGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQG-----LLPHQL---- 601 (685)
Q Consensus 541 ~~~-~~~sl~~fl~~~~~---~~~------~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g-----~~P~~~---- 601 (685)
T Consensus 696 ~~~~~~~~~~~l~~wl~~~~~~~~~~~~~~~~rlesd~~aVrIMTIHkSKGLEFPVVflPf~~~~~~~~~~~~h~~~~~~ 775 (1181)
T PRK10876 696 EAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFE 775 (1181)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEECCCCCE
T ss_conf 99861135879999999997444656402203765666827999975036776898985476556777774453355560
Q ss_pred ---CC----------CHHHHHHHHHHHHHHHHHHHHEEEEEEC
Q ss_conf ---29----------9678789999999998586411699831
Q gi|254780952|r 602 ---SI----------NEGNVEGERRLAYVGITRAKKKCHLFYT 631 (685)
Q Consensus 602 ---~~----------~~~~~eEErRL~YVA~TRAk~~L~l~~~ 631 (685)
T Consensus 776 ~~~d~~~~~~~~~~~~~E~laE~~RLLYVAlTRA~~~~~l~~~ 818 (1181)
T PRK10876 776 AVLDLNAAEESVALAEAERLAEDLRLLYVALTRSVWHCSLGVA 818 (1181)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
T ss_conf 3313776878999999998656776789987676564500210