HHsearch alignment for GI: 254780952 and conserved domain: PRK10919
>PRK10919 ATP-dependent DNA helicase Rep; Provisional.
Probab=100.00 E-value=0 Score=1069.90 Aligned_cols=615 Identities=35% Similarity=0.535 Sum_probs=529.9
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC---CCE
Q ss_conf 29988999985389896699958898835899999999998089997886762114799999999999851645---878
Q gi|254780952|r 29 GLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK---IPR 105 (685)
Q Consensus 29 ~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~---~~~ 105 (685)
T Consensus 2 ~Ln~~Q~~AV~-~~~gp~lVlAGaGSGKT~tLt~Ria~Li~~~~v~P~~ILalTFT~kAA~Emk~Rl~~~lg~~~~~~~~ 80 (672)
T PRK10919 2 RLNPGQQQAVE-FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLM 80 (672)
T ss_pred CCCHHHHHHHC-CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 99989999983-99999899973855879999999999986689893338544217999999999999771832137867
Q ss_pred EEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCH
Q ss_conf 96178999999998499848798980728999999999999973998547898999999866754158964612114653
Q gi|254780952|r 106 IQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTE 185 (685)
Q Consensus 106 i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 185 (685)
T Consensus 81 i~TFHS~~~~iLr~~~~~lg~~~~f~i~d~~d~~~~~k~~~~~~~~-~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~ 159 (672)
T PRK10919 81 ISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE-DDKVLLQQLISTISNWKNDLKTPAQAAAGAKGE 159 (672)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 8848999999999989982899998361699999999999987320-234789999999999987179999998761050
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 899999999975577775300111000124543012-0688974012210253210775113468878775111126788
Q gi|254780952|r 186 DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQG 264 (685)
Q Consensus 186 ~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~ 264 (685)
T Consensus 160 ~~~~~~~~y~~Y~~~l~~~~~~DFdDll~~~~~ll~~~~~v~~~~~~r~~~IlVDEfQDtn~~Q~~ll~~L~~~-----~ 234 (672)
T PRK10919 160 RDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGS-----R 234 (672)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCEEEEEECHHCCCHHHHHHHHHHHCC-----C
T ss_conf 77999999999999999869988799999999998528999999997540897622404999999999997279-----9
Q ss_pred CEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCE
Q ss_conf 75999953068863113322013455420576640678761267514678752024443432010122221023556744
Q gi|254780952|r 265 ARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKV 344 (685)
Q Consensus 265 ~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v 344 (685)
T Consensus 235 ~~l~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~~i~L~~NyRS~~~Il~~an~li~~n~~~~~k~l~~~~~~--g~~~ 312 (672)
T PRK10919 235 ARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGY--GDEL 312 (672)
T ss_pred CCEEEECCCCCEEEHHHCCCHHHHHHHHHHCCCCEEEEEHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCC--CCCE
T ss_conf 84777379662300750677689999887566774998423249977899999998761832111001332278--9861
Q ss_pred EEEECCCCCHHCCCCCHHHHH-HHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHH
Q ss_conf 887315531000000001366-6531136530311101001478899875202332032033-10001121028999998
Q gi|254780952|r 345 SIHVSQSDNSELSTIIQEIIN-IQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRL 422 (685)
Q Consensus 345 ~~~~~~~~~~Ea~~Ia~~I~~-l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~ 422 (685)
T Consensus 313 ~~~~~~~~~~Ea~~i~~~ii~~~~~~~~~~~diAIL~R~n~~~~~le~~L~~~~IPy~i~g~~~f~~r~eikdlla~Lr~ 392 (672)
T PRK10919 313 KVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV 392 (672)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHHHHHHHH
T ss_conf 79835987999999999999998734888355799954503226899999977998799578323127999999999998
Q ss_pred HHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 84663024575304687546502466888878877398468999764104679977854334343335666531024660
Q gi|254780952|r 423 VCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDP 502 (685)
Q Consensus 423 i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 502 (685)
T Consensus 393 l~np~d~~~~~ril~~p~~~i~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~~~-~ 471 (672)
T PRK10919 393 LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQTLTGRGYESLTRFTHWLAEIQRLAERE-P 471 (672)
T ss_pred HCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_conf 749872489999970730147999999999999863766899998754300026778999999999999999986248-3
Q ss_pred HHHHHHHHHHCCCHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 2223334777096678850-688455898884399999998302---------68899999757654221--11545893
Q gi|254780952|r 503 APIANMILEQSGYMAMWKN-NKSSEKSQERLDNLRELLSIIEKH---------ETLEGFVLQAPLRENLG--SFIPDSNC 570 (685)
Q Consensus 503 ~~l~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~l~~l~~~~~~~---------~sl~~fl~~~~~~~~~~--~~~~~~d~ 570 (685)
T Consensus 472 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~r~~n~~~l~~~~~e~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 551 (672)
T PRK10919 472 VAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQ 551 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 78999999986388899873678402899999999999999999734554652209999999887766643765678990
Q ss_pred EEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 69996113455669836984685766842212996787899999999985864116998313211257654333555688
Q gi|254780952|r 571 IQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQV 650 (685)
Q Consensus 571 V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~ 650 (685)
T Consensus 552 V~LmTiH~SKGLEf~~Vfl~gl~eg~~P~~~~~~~~~~eEERRLfYVa~TRAk~~L~ls~~~~r~~~g~-----~~~~~p 626 (672)
T PRK10919 552 VQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGE-----LVRPEP 626 (672)
T ss_pred EEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCHHHHCCC-----CCCCCC
T ss_conf 899648862310368799967838999876569986087999999999999877665500452343887-----758999
Q ss_pred CCHHHHCC
Q ss_conf 87233147
Q gi|254780952|r 651 SQFLLELY 658 (685)
Q Consensus 651 SrFl~El~ 658 (685)
T Consensus 627 SrFl~eip 634 (672)
T PRK10919 627 SRFLLELP 634 (672)
T ss_pred CCCHHHCC
T ss_conf 94621378