HHsearch alignment for GI: 254780952 and conserved domain: PRK11069
>PRK11069 recC exonuclease V subunit gamma; Provisional.
Probab=99.53 E-value=4.7e-12 Score=101.50 Aligned_cols=309 Identities=13% Similarity=0.183 Sum_probs=175.1
Q ss_pred CCCCEEEEECCCCCHHCCCCCHHHHHHHHH--CCCCCHHHHEECC-CHHHHHHHHHHHCC----CCCEEEECCCCC-CCC
Q ss_conf 567448873155310000000013666531--1365303111010-01478899875202----332032033100-011
Q gi|254780952|r 340 DDAKVSIHVSQSDNSELSTIIQEIINIQNT--GMSLNNIAILVRT-SWQTRKFEDAFLEQ----EIPHKVIGGSFY-DRQ 411 (685)
Q Consensus 340 ~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~--g~~~~diAVL~Rt-n~~~~~l~~~L~~~----gIP~~~~g~~~f-~~~ 411 (685)
T Consensus 370 ~D~Si~ih~CHS~~REVEvLhD~LL~~~~~dp~L~PrDIlVM~PDI~~YaP~I~AVFg~~~~~r~IP~~IaDr~~~~~~p 449 (1122)
T PRK11069 370 DDRSLSFHVCHSPQREVEVLHDRLLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGNAPGERYLPFAISDRRARQSHP 449 (1122)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHCCH
T ss_conf 99846998479859999999999999985299998311688769878876899998389987886986771755212169
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHCCC--------------------CHHHHHH
Q ss_conf 2102899999884663024575304687----546502466888878877398--------------------4689997
Q gi|254780952|r 412 EIRDALAYFRLVCQEHRDEDFKRIINCP----KRGIGKESLHKIQYHASQHHI--------------------SLLQASE 467 (685)
Q Consensus 412 eV~~lla~Lr~i~~p~d~~a~~~il~~p----~~gi~~~~l~~l~~~a~~~~~--------------------~~~~~~~ 467 (685)
T Consensus 450 l~~a~l~LL~L~~sRf~asevl~LL~~pav~~rF~l~~~dl~~l~~Wl~~aGiRWGlD~~~r~~~~lp~~~~nTW~~GL~ 529 (1122)
T PRK11069 450 VLQAFISLLSLPDSRFVAEDVLALLEVPALAARFDITEEGLRYLRQWVEESGIRWGLDDDNVRELELPATGQHTWRFGLT 529 (1122)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999846456778999999971968998849999999999999998197757787779863798534351999999
Q ss_pred HHHCC-------------------CCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHCCCHHHHHCCCCHHH
Q ss_conf 64104-------------------67997785433434333566653102-46602223334777096678850688455
Q gi|254780952|r 468 KLIDS-------------------GQFRPQIRQSLQNFVKDIRRWNNCSK-KMDPAPIANMILEQSGYMAMWKNNKSSEK 527 (685)
Q Consensus 468 ~~~~~-------------------~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 527 (685)
T Consensus 530 RlLLGyam~~~~~~~~~ilP~~~~~g~~ael~G~L~~fl~~L~~~~~~l~~~~~~~~W~~~l~~l--l~~ff~~~~e~~~ 607 (1122)
T PRK11069 530 RMLLGYAMESAAGEWQSVLPYDESSGLIAELAGHLASLLMQLNIWRRGLAQPRPLEEWLPVCRQL--LDDFFLPDAETEA 607 (1122)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHCCCHHHHH
T ss_conf 99877023788776476577775565309898789999999999999975999999999999999--9998479841589
Q ss_pred HH-HHHHHHHHHHHHHH--HCC---CHHHHHHHHHHHHHHHHCC----CCCCCEEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf 89-88843999999983--026---8899999757654221115----45893699961134556698369846857668
Q gi|254780952|r 528 SQ-ERLDNLRELLSIIE--KHE---TLEGFVLQAPLRENLGSFI----PDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL 597 (685)
Q Consensus 528 ~~-~~l~~l~~l~~~~~--~~~---sl~~fl~~~~~~~~~~~~~----~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~ 597 (685)
T Consensus 608 ~l~~i~~~~~~l~~~~~~a~~~~~i~l~vv~~~L--~~~L~~~~~~~~Fl~G~VtFctl~PMRsIPfkvVcLLGmndg~f 685 (1122)
T PRK11069 608 ALTLIEQQWQALIEEGLDAQYGDAVPLSLLRDEL--AQRLDQERISQRFLAGPVNFCTLMPMRSIPFKVVCLLGMNDGVY 685 (1122)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH--HHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCC
T ss_conf 9999999999999999846888746599999999--99851656445657897588257645688712288968986779
Q ss_pred CCHH-------------CCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCC
Q ss_conf 4221-------------2996787899999999985864116998313211257654333555688872331478
Q gi|254780952|r 598 PHQL-------------SINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYD 659 (685)
Q Consensus 598 P~~~-------------~~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~ 659 (685)
T Consensus 686 PR~~~~~~FDLma~~pr~GDRsrRddDRyLFLEaLLSAr~~LyiSyvGr----s---irdn~e~~PSvlV~ELld 753 (1122)
T PRK11069 686 PRTLPPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGR----S---IQDNSERFPSVLVSELIE 753 (1122)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECC----C---CCCCCCCCCCHHHHHHHH
T ss_conf 9989999987344676689998326579999999995143179988131----3---688892898387999999