HHsearch alignment for GI: 254780952 and conserved domain: PRK11131
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional.
Probab=95.89 E-value=0.036 Score=33.63 Aligned_cols=64 Identities=27% Similarity=0.223 Sum_probs=42.1
Q ss_pred HHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 8999985389896699958-898835899999999998089997886762114799999999999851645
Q gi|254780952|r 33 QQTHAVTIPDDTPLLILAG-AGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 33 ~Q~~av~~~~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
T Consensus 81 ~i~~~i~---~nqVvii~GeTGsGKTTQiPq---~~le~g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~ 145 (1295)
T PRK11131 81 DILEAIR---DHQVVIVAGETGSGKTTQLPK---ICLELGRGIKGLIGHTQPRRLAARTVANRIAEELETE 145 (1295)
T ss_pred HHHHHHH---HCCEEEEECCCCCCHHHHHHH---HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999---799699976899987889999---9996279999989977965999999999999981999