HHsearch alignment for GI: 254780952 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=97.17 E-value=0.0036 Score=40.49 Aligned_cols=66 Identities=30% Similarity=0.333 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf 889999853898966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r 32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI 103 (685)
Q Consensus 32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~ 103 (685)
T Consensus 11 ~~i~~~l~~--~~~~vl~a~tGsGKtTqvP---~~ll~~~-~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~ 76 (812)
T PRK11664 11 PELLTALKT--APQVLLKAPTGAGKSTWLP---LQLLQQG-GINGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHHHHH--CCEEEEEECCCCCHHHHHH---HHHHHCC-CCCCCEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999997--9979999089999899999---9999646-8899389938839999999999999729999