HHsearch alignment for GI: 254780952 and conserved domain: PRK11664

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=97.17  E-value=0.0036  Score=40.49  Aligned_cols=66  Identities=30%  Similarity=0.333  Sum_probs=47.9

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCCCC
Q ss_conf             889999853898966999588988358999999999980899978867621147999999999998516458
Q gi|254780952|r   32 AQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKI  103 (685)
Q Consensus        32 ~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~~  103 (685)
T Consensus        11 ~~i~~~l~~--~~~~vl~a~tGsGKtTqvP---~~ll~~~-~~~g~I~~~qPRR~AA~s~A~RvA~e~~e~~   76 (812)
T PRK11664         11 PELLTALKT--APQVLLKAPTGAGKSTWLP---LQLLQQG-GINGKIIMLEPRRLAARNVAQRLAEQLGEKP   76 (812)
T ss_pred             HHHHHHHHH--CCEEEEEECCCCCHHHHHH---HHHHHCC-CCCCCEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999997--9979999089999899999---9999646-8899389938839999999999999729999