HHsearch alignment for GI: 254780952 and conserved domain: PRK11773
>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=100.00 E-value=0 Score=1147.18 Aligned_cols=623 Identities=38% Similarity=0.610 Sum_probs=567.6
Q ss_pred CCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 21588876299889999853898966999588988358999999999980899978867621147999999999998516
Q gi|254780952|r 21 SCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG 100 (685)
Q Consensus 21 ~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~ 100 (685)
T Consensus 1 m~~~~~l~~LN~~Q~~AV~-~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~ 79 (722)
T PRK11773 1 MDVSYLLDSLNDKQREAVA-APLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLG 79 (722)
T ss_pred CCHHHHHHHCCHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9878997826999999980-999987999738715999999999999982999878828984589999999999998717
Q ss_pred CCC--CEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 458--789617899999999849984879898072899999999999997399854789899999986675415896461
Q gi|254780952|r 101 EKI--PRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDI 178 (685)
Q Consensus 101 ~~~--~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~ 178 (685)
T Consensus 80 ~~~~~~~i~TfHSfc~~iLr~~~~~~g~~~~f~I~d~~d~~~l~k~~~~~~~~d~~~~~~~~~~~~i~~~k~~~~~p~~~ 159 (722)
T PRK11773 80 TSQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLLKRLIKALNLDEKQWPPRQAQWYINGQKDEGLRPQHI 159 (722)
T ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCHHCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77788889729999999999969983989998787689999999999997699800088999999987776548998897
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2114653899999999975577775300111000124543012-068897401221025321077511346887877511
Q gi|254780952|r 179 PQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQ 257 (685)
Q Consensus 179 ~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~ 257 (685)
T Consensus 160 ~~~~-~~~~~~~~~iy~~Y~~~~~~~~~lDFdDll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~La~ 238 (722)
T PRK11773 160 QAYG-DPVEQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLDKPHILQHYQERFRHILVDEFQDTNAIQYAWIRLLAG 238 (722)
T ss_pred HHCC-CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 6558-989999999999999999876998889999999998621999999998539799997723599999999998617
Q ss_pred CCCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCC
Q ss_conf 11267887599995306886311332201345542057664067876126751467875202444343201012222102
Q gi|254780952|r 258 KEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRD 337 (685)
Q Consensus 258 ~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~ 337 (685)
T Consensus 239 ~-----~~nl~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~~~~i~L~~NyRSt~~Il~~an~li~~n~~r~~k~l~~~~~ 313 (722)
T PRK11773 239 D-----TGNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPGAETIRLEQNYRSTANILKAANALIANNSGRLGKELWTDGG 313 (722)
T ss_pred C-----CCCEEEEECCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 8-----97289996740211333056367899998744776278614441666579999999986324555550024577
Q ss_pred CCCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHH
Q ss_conf 35567448873155310000000013666531136530311101001478899875202332032033-10001121028
Q gi|254780952|r 338 CHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDA 416 (685)
Q Consensus 338 ~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~l 416 (685)
T Consensus 314 --~g~~i~~~~~~~~~~Ea~~Ia~~I~~~~~~g~~~~diAIL~Rtn~~~~~le~aL~~~gIPy~i~gg~~f~~r~eikd~ 391 (722)
T PRK11773 314 --DGEPISLYCAFNELDEARFVVERIKQWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGGMRFFERQEIKDA 391 (722)
T ss_pred --CCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCHHCCHHHHHH
T ss_conf --898605880699789999999999999873898101257751216467899999865998487467101135999999
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999884663024575304687546502466888878877398468999764104679977854334343335666531
Q gi|254780952|r 417 LAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNC 496 (685)
Q Consensus 417 la~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 496 (685)
T Consensus 392 la~Lrl~~np~d~~al~ril~~P~rgig~~~l~~l~~~a~~~~~sl~~~~~~~~~~~~l~~~~~~~l~~f~~li~~l~~~ 471 (722)
T PRK11773 392 LAYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQE 471 (722)
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987634854349999998284458897689999999997399899999998754656888999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHCCCC
Q ss_conf 02466022233347770966788506884558988843999999983026---------889999975765422111545
Q gi|254780952|r 497 SKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHE---------TLEGFVLQAPLRENLGSFIPD 567 (685)
Q Consensus 497 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~---------sl~~fl~~~~~~~~~~~~~~~ 567 (685)
T Consensus 472 ~~~~~l~~~~~~i~~~~gl~~~~~~~~-~~~~~~r~~nl~el~~~~~~f~~~~~~~~~~~L~~fL~~~~l~~~~~~~~~~ 550 (722)
T PRK11773 472 TADMPLHEQTDRVIKDSGLRAMYEQEK-GEKGQARIENLEELVTATRQFEYPDEDEDLTPLQAFLSHAALEAGEGQADAH 550 (722)
T ss_pred HCCCCHHHHHHHHHHHCCHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 514999999999999657899997314-6537999999999999999986402334426799999999863376434567
Q ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH-HHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89369996113455669836984685766842212996-78789999999998586411699831321125765433355
Q gi|254780952|r 568 SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE-GNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQ 646 (685)
Q Consensus 568 ~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~-~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~ 646 (685)
T Consensus 551 ~d~V~LmTiH~AKGLEFp~Vfl~gl~eg~fP~~~s~~~~~~leEERRLfYVaiTRAk~~L~ls~~~~r~~~g~~-----~ 625 (722)
T PRK11773 551 EDAVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLEEGGRLEEERRLAYVGITRAMQKLTLTYAESRRLYGKE-----V 625 (722)
T ss_pred CCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCHHHHCCCC-----C
T ss_conf 88289996120268667768980661798886334689751089999999989887452488551254546777-----6
Q ss_pred CCCCCCHHHHCC
Q ss_conf 568887233147
Q gi|254780952|r 647 PSQVSQFLLELY 658 (685)
Q Consensus 647 ~~~~SrFl~El~ 658 (685)
T Consensus 626 ~~~pSRFl~eip 637 (722)
T PRK11773 626 YHRPSRFIREIP 637 (722)
T ss_pred CCCCCCCHHHCC
T ss_conf 788981466578