HHsearch alignment for GI: 254780952 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=95.79 E-value=0.062 Score=32.00 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCCHHHHHHC-----CCHHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf 83215888762-----998899998538-989669995889883589999999999808999788676211479999999
Q gi|254780952|r 19 VPSCVPNYLKG-----LNAQQTHAVTIP-DDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 19 ~~~~~~~~l~~-----Ln~~Q~~av~~~-~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~ 92 (685)
T Consensus 11 L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~-~~~qaLIL~PTRELa~QV~ 89 (459)
T PRK11776 11 LPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-FRVQALVLCPTRELADQVA 89 (459)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC-CCCCEEEEECHHHHHHHHH
T ss_conf 799999999977999999899999999977998899889985899999999998411367-8985999967599999999
Q ss_pred HHHHH
Q ss_conf 99998
Q gi|254780952|r 93 NRLAC 97 (685)
Q Consensus 93 ~Ri~~ 97 (685)
T Consensus 90 ~~~~~ 94 (459)
T PRK11776 90 KEIRR 94 (459)
T ss_pred HHHHH
T ss_conf 99999