HHsearch alignment for GI: 254780952 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=92.98 E-value=0.21 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=34.8
Q ss_pred CCCCCHHHHHH--CC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf 68321588876--29---98899998538989669995889883589999999999808999788676211479999999
Q gi|254780952|r 18 FVPSCVPNYLK--GL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK 92 (685)
Q Consensus 18 ~~~~~~~~~l~--~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~ 92 (685)
T Consensus 7 ~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTT-lA~iiA~~~---~~~---f~~lnA~~~gv~dir 79 (417)
T PRK13342 7 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTT-LARIIAGAT---DAE---FEALSAVTSGVKDLR 79 (417)
T ss_pred HCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHH---CCC---EEEEECCCCCHHHHH
T ss_conf 4999888857987760897199999976999759988969998999-999999986---898---899614103889999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780952|r 93 NRLA 96 (685)
Q Consensus 93 ~Ri~ 96 (685)
T Consensus 80 ~ii~ 83 (417)
T PRK13342 80 EVIE 83 (417)
T ss_pred HHHH
T ss_conf 9999