HHsearch alignment for GI: 254780952 and conserved domain: PRK13342

>PRK13342 recombination factor protein RarA; Reviewed.
Probab=92.98  E-value=0.21  Score=28.39  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CCCCCHHHHHH--CC---CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHH
Q ss_conf             68321588876--29---98899998538989669995889883589999999999808999788676211479999999
Q gi|254780952|r   18 FVPSCVPNYLK--GL---NAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMK   92 (685)
Q Consensus        18 ~~~~~~~~~l~--~L---n~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~   92 (685)
T Consensus         7 ~RP~~lde~vGQ~hllg~~~~L~~~i~~~~~~s~Il~GPPG~GKTT-lA~iiA~~~---~~~---f~~lnA~~~gv~dir   79 (417)
T PRK13342          7 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTT-LARIIAGAT---DAE---FEALSAVTSGVKDLR   79 (417)
T ss_pred             HCCCCHHHHCCCHHHHCCCHHHHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHH---CCC---EEEEECCCCCHHHHH
T ss_conf             4999888857987760897199999976999759988969998999-999999986---898---899614103889999


Q ss_pred             HHHH
Q ss_conf             9999
Q gi|254780952|r   93 NRLA   96 (685)
Q Consensus        93 ~Ri~   96 (685)
T Consensus        80 ~ii~   83 (417)
T PRK13342         80 EVIE   83 (417)
T ss_pred             HHHH
T ss_conf             9999