HHsearch alignment for GI: 254780952 and conserved domain: PRK13869
>PRK13869 plasmid-partitioning protein RepA; Provisional.
Probab=90.41 E-value=0.35 Score=26.88 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=14.5
Q ss_pred EEEEECC----CCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 6999588----9883589999999999808999788676211
Q gi|254780952|r 46 LLILAGA----GTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 46 ~lV~Aga----GsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
T Consensus 121 ~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G---~RVLlIDL 158 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLAL-QG---YRVLAVDL 158 (405)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHH-CC---CCEEEEEC
T ss_conf 8289997888776599999999999997-79---98899964