>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.

Probab=100.00 E-value=0 Score=592.02 Aligned_cols=585 Identities=21% Similarity=0.342 Sum_probs=370.1 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--------CCHHHEEEEEECHHHHHHHHHHHHHHCCC---------- Q ss_conf 389896699958898835899999999998089--------99788676211479999999999985164---------- Q gi|254780952|r 40 IPDDTPLLILAGAGTGKTTVLIARMLHLICHKE--------IPPSKILAMTFTNQAIQEMKNRLACYLGE---------- 101 (685) Q Consensus 40 ~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~--------~~p~~Il~iTFT~~AA~el~~Ri~~~l~~---------- 101 (685) T Consensus 6 ~p~~g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~~i~~a~~~~~~~Gi 85 (1324) T TIGR00609 6 IPLNGTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRERIHEALRALKAKGI 85 (1324) T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 77664068874176148999999999999851512202443461212111222788899889988889999999864573 Q ss_pred -----------------------------------------------------CCCEEEEHHHHHHHHHHHHHHHCCCCC Q ss_conf -----------------------------------------------------587896178999999998499848798 Q gi|254780952|r 102 -----------------------------------------------------KIPRIQTFHSFCASILRKHGEVVGLPT 128 (685) Q Consensus 102 -----------------------------------------------------~~~~i~T~Hsf~~~il~~~~~~~g~~~ 128 (685) T Consensus 86 aklGddtlsdGiaay~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~A~~~~D~a~i~TIHgfC~~~L~~~~f~~~~~f 165 (1324) T TIGR00609 86 AKLGDDTLSDGIAAYCEEHEETSDELPELLLEAIQDEKVKQAISRLRLALATLDEAAIYTIHGFCQRMLEQYAFESDEIF 165 (1324) T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 02032034566899874256688732468888734754889999999999875476644663343566775323203300 Q ss_pred CCCCCCHHHHHHHHHHHHHHC----------------------------------------------------------- Q ss_conf 980728999999999999973----------------------------------------------------------- Q gi|254780952|r 129 DFAILDSAESRTIIKQLLKDL----------------------------------------------------------- 149 (685) Q Consensus 129 ~~~i~~~~~~~~~~~~~~~~~----------------------------------------------------------- 149 (685) T Consensus 166 ~~~l~~~~~--~l~~~~~~df~r~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1324) T TIGR00609 166 EQELIEDES--LLLAEIVKDFWRRNFYNLPFDIAQIVLKTKKSPQAVLTQILAYLLRQSYAEPIYLAFLSPPLDLEKLIK 243 (1324) T ss_pred HHHCCCCHH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHH T ss_conf 021035877--999999999998630466468999999986215778878888876665303036653155513799999 Q ss_pred ----------------------------------------CCCCCCCCHHHHH---HHHHHHH----------------- Q ss_conf ----------------------------------------9985478989999---9986675----------------- Q gi|254780952|r 150 ----------------------------------------QIDDKDYDPHEVI---EKIDYWQ----------------- 169 (685) Q Consensus 150 ----------------------------------------~~~~~~~~~~~~~---~~i~~~k----------------- 169 (685) T Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kF~ 323 (1324) T TIGR00609 244 WHEQIYKKLDKLKKQLIASFRIILKELNALIKDLRKYEKKGLKRRKFSKENLLKWFVKLLEWAESSLLIYKFPKILKKFS 323 (1324) T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC T ss_conf 99999998720268999999999999999997436300035543458700047999999730345202343355776315 Q ss_pred ---------HCC---CCHHHH-----H---HCC-CC-------H------HHHHHHHHHHHHHHHHHHHHCCCCCCCHHH Q ss_conf ---------415---896461-----2---114-65-------3------899999999975577775300111000124 Q gi|254780952|r 170 ---------NRG---WNPKDI-----P---QSS-LT-------E------DAEIPKAIYIQYVAYLQKTKSCDFGGLIIK 215 (685) Q Consensus 170 ---------~~~---~~~~~~-----~---~~~-~~-------~------~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~ 215 (685) T Consensus 324 ~~~l~~~~~~g~LGk~~~~~~~f~~~~~~~~~~~~~nalee~~~~~~~~~~~~~l~~v~~~L~~~k~~~~~~gfddll~~ 403 (1324) T TIGR00609 324 QKNLEAKAKKGCLGKTTPKHAVFEEIDKLLAEREEENALEELKFSLKDRVRLRLLKEVQEELKKEKKRRREIGFDDLLSR 403 (1324) T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH T ss_conf 67887554305678888881323789998851101347887668889999999999999999998523104783368999 Q ss_pred HHHHCCC-H---HHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHCCCCCCHHH-HH Q ss_conf 5430120-6---88974012210253210775113468878775111126788759999530688631133220134-55 Q gi|254780952|r 216 TIEVLHH-P---HVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHI-LN 290 (685) Q Consensus 216 a~~ll~~-~---~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~-~~ 290 (685) T Consensus 404 L~~aL~~n~~~~~l~~~ir~~y~~aLIDEFQDTD~~Qy~IF~~lf~~~~~-~~~~LfLIGDPKQaIY~FRgADI~tYnL~ 482 (1324) T TIGR00609 404 LEKALKSNEEGEKLAQAIREQYPIALIDEFQDTDPQQYRIFSKLFIAQKD-FETALFLIGDPKQAIYSFRGADIFTYNLQ 482 (1324) T ss_pred HHHHHHCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCCCEEECCCHHHHHHHHCCCHHHHHHH T ss_conf 99997408678689999983296788724336887899999998307886-44353243173177764305761135589 Q ss_pred HHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH------HCCHH-----H----H-HH---------CCCCCCCCEE Q ss_conf 420576640678761267514678752024443432------01012-----2----2-21---------0235567448 Q gi|254780952|r 291 FQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQ------RFDKK-----L----F-TQ---------RDCHDDAKVS 345 (685) Q Consensus 291 f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~------r~~k~-----l----~-~~---------~~~~~~~~v~ 345 (685) T Consensus 483 Ak~~~~~d~ry~L~~N~RS~~~Lv~s~N~lF~~~~~~~~~pF~~~~~GlenPi~f~~v~~~~~n~~~~~~~~~~~~~p~~ 562 (1324) T TIGR00609 483 AKEKADEDARYTLDTNWRSTPALVESINKLFSQAENNAIAPFLFKNEGLENPIPFIPVLAAQKNSKGSFVINGQEQPPIH 562 (1324) T ss_pred HHHCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE T ss_conf 75126623400453456573889999999841123576554210788877777762356400012456443777777522 Q ss_pred EEECC--CC---C-----HHCCCCCHHHHHHHH----------------HCCCCCHHHHEECCCHHHHHHHHHHHCCCCC Q ss_conf 87315--53---1-----000000001366653----------------1136530311101001478899875202332 Q gi|254780952|r 346 IHVSQ--SD---N-----SELSTIIQEIINIQN----------------TGMSLNNIAILVRTSWQTRKFEDAFLEQEIP 399 (685) Q Consensus 346 ~~~~~--~~---~-----~Ea~~Ia~~I~~l~~----------------~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP 399 (685) T Consensus 563 ~~~~~V~~~~~G~~~~~~~~~~~~a~~I~~wL~~~~~~~~~~~~~~~g~~~~~~~dIaVLVr~~~ea~~~~~aL~~~~I~ 642 (1324) T TIGR00609 563 FFVTEVEKKELGVDDYRQTIAEKCAREIADWLAAAALGLAKFKAKEEGIRPLRAGDIAVLVRGRKEANQVRKALKKAQIP 642 (1324) T ss_pred EEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC T ss_conf 10112320003603889999998699999999999999874000026723555016048427814489999999860141 Q ss_pred EEEECC--CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH-HHHHHCCCCCC Q ss_conf 032033--100011210289999988466302457530468754650246688887887739846899-97641046799 Q gi|254780952|r 400 HKVIGG--SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQA-SEKLIDSGQFR 476 (685) Q Consensus 400 ~~~~g~--~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~-~~~~~~~~~~~ 476 (685) T Consensus 643 s~y~s~k~~vf~t~ea~~l~~lL~a~l~P~~~~~l~~~L~s~~f~~~~~~~~~~~~---qDkiCLieefienii---vLL 716 (1324) T TIGR00609 643 SVYLSDKDSVFATEEAQELLLLLEALLEPEREGTLRAALASRIFGLSALELETLNQ---QDKICLIEEFIENII---VLL 716 (1324) T ss_pred CHHHCCCCCHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHH---HHH T ss_conf 02232644110486589999999985082468889999997874678899999732---364204888874664---453 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC---CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC-----CH Q ss_conf 77854334343335666531024660222333477709---66788506884558988843999999983026-----88 Q gi|254780952|r 477 PQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSG---YMAMWKNNKSSEKSQERLDNLRELLSIIEKHE-----TL 548 (685) Q Consensus 477 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~~-----sl 548 (685) T Consensus 717 ek~e~~~~~~~~~f~~~~~~w~~~G~l~~~~~~~~~~~~~~~~~~LL~~~~Ger~lt~l~~l~elL~~~~~~~~~~~~l~ 796 (1324) T TIGR00609 717 EKDEKEWERVVEKFREYRDIWRKRGVLAMFQRLMLEAKNKTIGERLLSQNGGERSLTDLLHLAELLQEAAHQEENKLSLL 796 (1324) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 36757899999999999999998638999999999861023654532025774226659999999999875020123100 Q ss_pred HHHHHHHHHHH------HHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCC------C---CHH----------CC Q ss_conf 99999757654------22111545893699961134556698369846857668------4---221----------29 Q gi|254780952|r 549 EGFVLQAPLRE------NLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLL------P---HQL----------SI 603 (685) Q Consensus 549 ~~fl~~~~~~~------~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~------P---~~~----------~~ 603 (685) T Consensus 797 r~l~~~i~~~~~~~~~e~~~rl~sD~~~vkI~TiHkSKGLeYpiV~lPf~~~~~~~~~~~~~~~Yh~~~~~~~~~d~~~~ 876 (1324) T TIGR00609 797 RWLEKQISKEEEEELEEEIIRLESDAELVKIVTIHKSKGLEYPIVFLPFITDAKKSDDSSKLAIYHDDGSRKLLLDLNKL 876 (1324) T ss_pred HHHHHHCCCCCCCCCCHHHCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf 67898266888887313340634611441477887412458870202666567678851578887775224666635502 Q ss_pred -----------CHHHHHHHHHHHHHHHHHHHHEEEEEECCC Q ss_conf -----------967878999999999858641169983132 Q gi|254780952|r 604 -----------NEGNVEGERRLAYVGITRAKKKCHLFYTIN 633 (685) Q Consensus 604 -----------~~~~~eEErRL~YVA~TRAk~~L~l~~~~~ 633 (685) T Consensus 877 ~~~~~~~~~~~~~e~~~E~lRllYVAlTRA~~~l~~~~a~~ 917 (1324) T TIGR00609 877 EEQRRTVKKLARDERLAEDLRLLYVALTRAKKQLFIGLAPL 917 (1324) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 14789998788888767666689999999999988532356

HHsearch alignment for GI: 254780952 and conserved domain: TIGR00609