HHsearch alignment for GI: 254780952 and conserved domain: TIGR01073

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=1308.76  Aligned_cols=626  Identities=39%  Similarity=0.658  Sum_probs=589.6

Q ss_pred             HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCCC----
Q ss_conf             8762998899998538989669995889883589999999999808999788676211479999999999985164----
Q gi|254780952|r   26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGE----  101 (685)
Q Consensus        26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~----  101 (685)
T Consensus         1 Ll~~LN~~Q~~AV~-tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaq   79 (811)
T TIGR01073         1 LLAGLNPEQREAVK-TTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQ   79 (811)
T ss_pred             CCCCCCHHHHHHHH-HCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             90102489999973-03784101013788731057899999997223698504655322053167899999985246654


Q ss_pred             ---------------------------CCCEEEEHHHHHHHHHHHHHH----HCC--CCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf             ---------------------------587896178999999998499----848--7989807289999999999999-
Q gi|254780952|r  102 ---------------------------KIPRIQTFHSFCASILRKHGE----VVG--LPTDFAILDSAESRTIIKQLLK-  147 (685)
Q Consensus       102 ---------------------------~~~~i~T~Hsf~~~il~~~~~----~~g--~~~~~~i~~~~~~~~~~~~~~~-  147 (685)
T Consensus        80 qefsqrwellGkyeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~~l~K~i~~~  159 (811)
T TIGR01073        80 QEFSQRWELLGKYEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQLSLMKDIVKK  159 (811)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             57767888743466789999988652142323038999999888888889876211454157611178889999999744


Q ss_pred             HCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHH
Q ss_conf             73998547898999999866754158964612114653-899999999975577775300111000124543012-0688
Q gi|254780952|r  148 DLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQSSLTE-DAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHV  225 (685)
Q Consensus       148 ~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~~-~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v  225 (685)
T Consensus       160 ~~dlD~Kkf~Pr~i~~~IS~~KN~l~~P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~LDFDDLIm~t~~LF~~~P~V  239 (811)
T TIGR01073       160 DKDLDPKKFEPRSILGTISNAKNELLSPEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNALDFDDLIMTTINLFQRVPDV  239 (811)
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             20477777885012554676651478868999730688788899999999999987614784212777548988731799


Q ss_pred             HHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCC---------CCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCC
Q ss_conf             9740122102532107751134688787751111---------2678875999953068863113322013455420576
Q gi|254780952|r  226 LKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQKE---------DSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFK  296 (685)
Q Consensus       226 ~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~~---------~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~  296 (685)
T Consensus       240 L~yYq~kF~yilvDEYQDTN~AQY~lv~~La~~~~E~~vdv~E~~~~~~nlcvVGDaDQSIY~wRGAdi~NIL~FEkDyp  319 (811)
T TIGR01073       240 LEYYQRKFQYILVDEYQDTNRAQYTLVRLLASRGEERQVDVSEADVRFRNLCVVGDADQSIYGWRGADITNILSFEKDYP  319 (811)
T ss_pred             HHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCHHHHHHHHHHCCC
T ss_conf             99988407467773344435899999998601888763455535568664478728865500120101563320100132


Q ss_pred             C-------CEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCHHHHHHHHH
Q ss_conf             6-------406787612675146787520244434320101222210235567448873155310000000013666531
Q gi|254780952|r  297 D-------ANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNT  369 (685)
Q Consensus       297 ~-------~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~  369 (685)
T Consensus       320 ~rlldGetA~~i~LEQNYRST~~IL~AAN~VI~~N~~R~pK~LWT~~~~G--~~I~~Y~A~~E~dEA~Fv~~~I~~l~~~  397 (811)
T TIGR01073       320 NRLLDGETATTILLEQNYRSTKNILQAANEVIEHNSNRKPKNLWTENSSG--EKITYYEADTERDEAQFVAGEIDKLRKN  397 (811)
T ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             31126763117763247521467999999998524788897300348899--6057872488101789999999998741


Q ss_pred             C--CCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCHH
Q ss_conf             1--36530311101001478899875202332032033-10001121028999998846630245753046875465024
Q gi|254780952|r  370 G--MSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKE  446 (685)
Q Consensus       370 g--~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~lla~Lr~i~~p~d~~a~~~il~~p~~gi~~~  446 (685)
T Consensus       398 ~P~~~~~D~AiLYRTNAQSR~~EE~l~k~n~pY~iVGG~kFYdRkEIkD~LAYLR~~~Np~D~~sL~RIiNvPKRGiG~~  477 (811)
T TIGR01073       398 GPELKYGDFAILYRTNAQSRVFEETLLKANIPYKIVGGLKFYDRKEIKDILAYLRVIANPDDDVSLERIINVPKRGIGAS  477 (811)
T ss_pred             CCCHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHH
T ss_conf             75100137038872672007899999864898066346102305779999999888617898833210123888764467


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHCCCCHH
Q ss_conf             66888878877398468999764104679977854334343335666531024660222333477709667885068845
Q gi|254780952|r  447 SLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSE  526 (685)
Q Consensus       447 ~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~  526 (685)
T Consensus       478 s~~~~~~~a~~~~iS~~~Ai~~~~~i~~~~~ks~~~~~~F~~~~~~l~~~~~~~~~~e~~~~vL~~SgY~~mL~~~~t~e  557 (811)
T TIGR01073       478 SLEKIRSYALELNISLFEAIGEIDEIGTLAAKSANALLQFAEMIENLRQQQEFLSVTEVVEEVLDKSGYREMLKAEKTEE  557 (811)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf             89999999986088888998788750235689999999999999999998600028899999851234078997407923


Q ss_pred             HHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHHHCCC------CCCCEEEEEECCCCCCCCCEEE
Q ss_conf             58988843999999983026------------88999997576542211154------5893699961134556698369
Q gi|254780952|r  527 KSQERLDNLRELLSIIEKHE------------TLEGFVLQAPLRENLGSFIP------DSNCIQIMTLHAAKGLEFDTVF  588 (685)
Q Consensus       527 ~~~~~l~~l~~l~~~~~~~~------------sl~~fl~~~~~~~~~~~~~~------~~d~V~i~TIH~SKGLEfd~V~  588 (685)
T Consensus       558 -a~~RlENl~E~~~v~~~Fe~~~~~Edpes~~~L~dFL~~~aL~~D~D~l~~~E~~~~Gdg~VtLMTLHaAKGLEFPVVF  636 (811)
T TIGR01073       558 -AQSRLENLDEFLSVTKEFEDESAEEDPESIKSLVDFLTDLALVSDLDDLEEEEEEAEGDGAVTLMTLHAAKGLEFPVVF  636 (811)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEHHHHCCCCCCCCEEE
T ss_conf             -4556899999999998453137766730033799999878765424433654011379964863134302567776256


Q ss_pred             ECCCCCCCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf             8468576684221299---67878999999999858641169983132112576543335556888723314783
Q gi|254780952|r  589 ISGWEQGLLPHQLSIN---EGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP  660 (685)
Q Consensus       589 i~gl~~g~~P~~~~~~---~~~~eEErRL~YVA~TRAk~~L~l~~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~  660 (685)
T Consensus       637 L~GlEeG~FPh~RsL~~~d~~~lEEERRLAYVGITRA~~~LyLT~A~~R~lfG~-----~~~~~PSRFl~EIP~~  706 (811)
T TIGR01073       637 LIGLEEGVFPHSRSLMEDDEKELEEERRLAYVGITRAEEELYLTHATSRTLFGR-----IQMNPPSRFLNEIPDE  706 (811)
T ss_pred             ECCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC-----CCCCCCCCCHHCCCHH
T ss_conf             548765567213404767811356788888666554431000100334253223-----3689875423308977