HHsearch alignment for GI: 254780952 and conserved domain: TIGR01075
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1207.55 Aligned_cols=620 Identities=38% Similarity=0.629 Sum_probs=591.6
Q ss_pred HHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHHHCC--CC-
Q ss_conf 876299889999853898966999588988358999999999980899978867621147999999999998516--45-
Q gi|254780952|r 26 YLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLG--EK- 102 (685)
Q Consensus 26 ~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~--~~- 102 (685)
T Consensus 1 lLd~LN~~QreaVaap~-~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~~ 79 (741)
T TIGR01075 1 LLDGLNDKQREAVAAPP-GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSARH 79 (741)
T ss_pred CCCCCCHHHHHHHCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96556657788740342-25548730688850247888998874078998535632003478999999999986201143
Q ss_pred ---CCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf ---87896178999999998499848798980728999999999999973998547898999999866754158964612
Q gi|254780952|r 103 ---IPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIP 179 (685)
Q Consensus 103 ---~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~ 179 (685)
T Consensus 80 ~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRlik~~n~~e~~~pPrq~~W~IN~qKdeGlRp~~i~ 159 (741)
T TIGR01075 80 QLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLIKSLNLDEKQFPPRQAMWYINNQKDEGLRPEHIE 159 (741)
T ss_pred EEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCHHHCC
T ss_conf 25553230577899999986675346861242364065799999999863876333671344201036656788832357
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCC-CHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 114653899999999975577775300111000124543012-0688974012210253210775113468878775111
Q gi|254780952|r 180 QSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLH-HPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLCQK 258 (685)
Q Consensus 180 ~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~-~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~~~ 258 (685)
T Consensus 160 ~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVDFAELLLRa~ELl~~~~~~l~hY~~RF~~ILvDEFQDTN~iQYaw~rllAg~ 239 (741)
T TIGR01075 160 AFDNDPVERTWIKIYAEYQEACDRAGLVDFAELLLRAYELLRNKPHILQHYQERFKHILVDEFQDTNKIQYAWIRLLAGE 239 (741)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 76777689999999999875306377345899999999975289589999987610054323245006999999996089
Q ss_pred CCCCCCCEEEEEECHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCC
Q ss_conf 12678875999953068863113322013455420576640678761267514678752024443432010122221023
Q gi|254780952|r 259 EDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDC 338 (685)
Q Consensus 259 ~~~~~~~~l~vVGD~dQsIY~fRGA~~~~~~~f~~~f~~~~~i~L~~NyRS~~~Ii~~an~li~~n~~r~~k~l~~~~~~ 338 (685)
T Consensus 240 ~-----~~V~~VGDDDQsIYgwRGA~veni~~fl~dF~~~~tirLEQNYRS~~nIL~AAN~lIanN~~RlGK~LwT~g~~ 314 (741)
T TIGR01075 240 T-----GNVMIVGDDDQSIYGWRGAQVENIQKFLKDFPIAETIRLEQNYRSTANILAAANALIANNDERLGKNLWTDGEV 314 (741)
T ss_pred C-----CCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCC
T ss_conf 9-----63798855874201245764188899997467888534200322178899998899852886567530134567
Q ss_pred CCCCCEEEEECCCCCHHCCCCCHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHCCCCCEEEECC-CCCCCCCCHHHH
Q ss_conf 5567448873155310000000013666531136530311101001478899875202332032033-100011210289
Q gi|254780952|r 339 HDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGG-SFYDRQEIRDAL 417 (685)
Q Consensus 339 ~~~~~v~~~~~~~~~~Ea~~Ia~~I~~l~~~g~~~~diAVL~Rtn~~~~~l~~~L~~~gIP~~~~g~-~~f~~~eV~~ll 417 (685)
T Consensus 315 G--e~i~~YsAfneLdEArFvv~~~~~w~~~GG~l~e~AvLYRsNAQSRv~Ee~L~~~~iPYriYGG~RFFERqEIKdAL 392 (741)
T TIGR01075 315 G--EPISLYSAFNELDEARFVVSRIKAWQREGGALDEIAVLYRSNAQSRVLEEALLRASIPYRIYGGMRFFERQEIKDAL 392 (741)
T ss_pred C--CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHH
T ss_conf 8--70257651341378999999999998658964136566325524689999997448980430786325678899999
Q ss_pred HHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998846630245753046875465024668888788773984689997641046799778543343433356665310
Q gi|254780952|r 418 AYFRLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCS 497 (685)
Q Consensus 418 a~Lr~i~~p~d~~a~~~il~~p~~gi~~~~l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 497 (685)
T Consensus 393 aYLRL~~Nr~DDaAfeRViNtP~RGiG~rTld~~r~~~r~~g~tLWqA~~~~~q~~~Lagra~~al~~F~~Li~~L~~~~ 472 (741)
T TIGR01075 393 AYLRLIANRNDDAAFERVINTPTRGIGDRTLDEVRQAARERGLTLWQAAVELLQEKVLAGRAASALVRFVELIEALAEET 472 (741)
T ss_pred HHHHHHCCCCCCCHHCCEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99987148875303203004888987546799999876520741899999987633679999999999999999998755
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHH
Q ss_conf 24660222333477709667885068-84558988843999999983026--------------------8899999757
Q gi|254780952|r 498 KKMDPAPIANMILEQSGYMAMWKNNK-SSEKSQERLDNLRELLSIIEKHE--------------------TLEGFVLQAP 556 (685)
Q Consensus 498 ~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~~~~l~~l~~l~~~~~~~~--------------------sl~~fl~~~~ 556 (685)
T Consensus 473 ~~m~L~~~~d~~~k~SgL~~~Y~~ekrgg~~~~~R~eNLeELV~at~~F~peds~fe~~p~n~~d~P~~~~l~AFLs~aa 552 (741)
T TIGR01075 473 ADMPLHEQTDHVLKDSGLREMYQQEKRGGEKGQARIENLEELVTATREFKPEDSNFEILPENAEDDPIMTELTAFLSHAA 552 (741)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 31446888999985003678999972146432357778899998873046464543326777677730334778877887
Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCH-HHHHHHHHHHHHHHHHHHHEEEEEECCCCC
Q ss_conf 6542211154589369996113455669836984685766842212996-787899999999985864116998313211
Q gi|254780952|r 557 LRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINE-GNVEGERRLAYVGITRAKKKCHLFYTINRR 635 (685)
Q Consensus 557 ~~~~~~~~~~~~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~-~~~eEErRL~YVA~TRAk~~L~l~~~~~~~ 635 (685)
T Consensus 553 LEaGe~qa~~~~~aVqLMTlHsAKGLEFp~VFlvG~EeG~FPS~~Sl~E~GrLEEERRL~YVgiTRA~~kL~ityAe~Rr 632 (741)
T TIGR01075 553 LEAGEGQADAGEDAVQLMTLHSAKGLEFPLVFLVGMEEGLFPSQMSLDERGRLEEERRLAYVGITRARKKLTITYAEARR 632 (741)
T ss_pred HHCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64150010101235466665632024557524662026778311210348695278888989978775665576886456
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCC
Q ss_conf 25765433355568887233147
Q gi|254780952|r 636 THDFTRVERYQPSQVSQFLLELY 658 (685)
Q Consensus 636 ~~~~~~~~~~~~~~~SrFl~El~ 658 (685)
T Consensus 633 LyGk~~y-----~~pSRFi~ElP 650 (741)
T TIGR01075 633 LYGKEEY-----HIPSRFIRELP 650 (741)
T ss_pred HHHHCCC-----CCCCCHHHHCC
T ss_conf 6310026-----88741143065