HHsearch alignment for GI: 254780952 and conserved domain: TIGR01448

>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=99.75  E-value=4.7e-18  Score=142.65  Aligned_cols=172  Identities=24%  Similarity=0.366  Sum_probs=100.5

Q ss_pred             HCCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHC-CCC---------CHHHEEEEEECHHHHHHHHHHHH
Q ss_conf             62998899998538989669-99588988358999999999980-899---------97886762114799999999999
Q gi|254780952|r   28 KGLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICH-KEI---------PPSKILAMTFTNQAIQEMKNRLA   96 (685)
Q Consensus        28 ~~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~-~~~---------~p~~Il~iTFT~~AA~el~~Ri~   96 (685)
T Consensus       349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~-~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E---  424 (769)
T TIGR01448       349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITK-AIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAE---  424 (769)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCC---
T ss_conf             77068899999998609489985778886168999-99999987168775531245677648873774378885110---


Q ss_pred             HHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf             85164587896178999999998499848798980728999999999999973998547898999999866754158964
Q gi|254780952|r   97 CYLGEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPK  176 (685)
Q Consensus        97 ~~l~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~  176 (685)
T Consensus       425 -~TG~---~a~TIHRL-----------lG~~~~~----------------------------------------------  443 (769)
T TIGR01448       425 -VTGL---EALTIHRL-----------LGYGSDT----------------------------------------------  443 (769)
T ss_pred             -CCCC---HHHHHHHH-----------HCCCCCC----------------------------------------------
T ss_conf             -0262---12347786-----------3689888----------------------------------------------


Q ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             61211465389999999997557777530011100012454301206889740122102532107751134688787751
Q gi|254780952|r  177 DIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC  256 (685)
Q Consensus       177 ~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~  256 (685)
T Consensus       444 -~~~~k------------------------------------~~~~~-------~~~DL~IvDE~SM~Dt--~L~~~lL~  477 (769)
T TIGR01448       444 -KSENK------------------------------------NLEDP-------IDADLLIVDESSMVDT--WLASSLLA  477 (769)
T ss_pred             -CCCCH------------------------------------HHCCC-------CCCCEEEEECCCHHHH--HHHHHHHH
T ss_conf             -73211------------------------------------01134-------7877699814621889--99999986


Q ss_pred             CCCCCCCCCEEEEEECHHH--HHHHCCCCCCHH-HHHHHCCCCCCEEEEEEECCC--CCHHHHHHHHHH
Q ss_conf             1112678875999953068--863113322013-455420576640678761267--514678752024
Q gi|254780952|r  257 QKEDSKQGARICCVGDENQ--CIYEWRGAQFSH-ILNFQKDFKDANIIKLEQNYR--STTHILNTANKL  320 (685)
Q Consensus       257 ~~~~~~~~~~l~vVGD~dQ--sIY~fRGA~~~~-~~~f~~~f~~~~~i~L~~NyR--S~~~Ii~~an~l  320 (685)
T Consensus       478 a---~P~~a~lllVGD~DQLPSV------~pG~VL~DLi~s-~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~  536 (769)
T TIGR01448       478 A---VPDHARLLLVGDADQLPSV------GPGQVLKDLIQS-KVIPVTRLTKVYRQAEGSSIITLAHKI  536 (769)
T ss_pred             H---CCCCCEEEEECCCCCCCCC------CCCHHHHHHHHC-CCCCEEECCCEEEECCCCHHHHHHHHH
T ss_conf             1---7977779888376888988------644089999846-886612121112411366467888987