HHsearch alignment for GI: 254780952 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=99.75 E-value=4.7e-18 Score=142.65 Aligned_cols=172 Identities=24% Similarity=0.366 Sum_probs=100.5
Q ss_pred HCCCHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHC-CCC---------CHHHEEEEEECHHHHHHHHHHHH
Q ss_conf 62998899998538989669-99588988358999999999980-899---------97886762114799999999999
Q gi|254780952|r 28 KGLNAQQTHAVTIPDDTPLL-ILAGAGTGKTTVLIARMLHLICH-KEI---------PPSKILAMTFTNQAIQEMKNRLA 96 (685)
Q Consensus 28 ~~Ln~~Q~~av~~~~~~~~l-V~AgaGsGKT~~L~~ri~~Ll~~-~~~---------~p~~Il~iTFT~~AA~el~~Ri~ 96 (685)
T Consensus 349 ~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~-~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl~E--- 424 (769)
T TIGR01448 349 LKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITK-AIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRLAE--- 424 (769)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHCCC---
T ss_conf 77068899999998609489985778886168999-99999987168775531245677648873774378885110---
Q ss_pred HHCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 85164587896178999999998499848798980728999999999999973998547898999999866754158964
Q gi|254780952|r 97 CYLGEKIPRIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPK 176 (685)
Q Consensus 97 ~~l~~~~~~i~T~Hsf~~~il~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~ 176 (685)
T Consensus 425 -~TG~---~a~TIHRL-----------lG~~~~~---------------------------------------------- 443 (769)
T TIGR01448 425 -VTGL---EALTIHRL-----------LGYGSDT---------------------------------------------- 443 (769)
T ss_pred -CCCC---HHHHHHHH-----------HCCCCCC----------------------------------------------
T ss_conf -0262---12347786-----------3689888----------------------------------------------
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61211465389999999997557777530011100012454301206889740122102532107751134688787751
Q gi|254780952|r 177 DIPQSSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDEYQDINTPQYLLLRLLC 256 (685)
Q Consensus 177 ~~~~~~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~a~~ll~~~~v~~~~~~r~~~ilVDEfQDtn~~Q~~ll~~L~ 256 (685)
T Consensus 444 -~~~~k------------------------------------~~~~~-------~~~DL~IvDE~SM~Dt--~L~~~lL~ 477 (769)
T TIGR01448 444 -KSENK------------------------------------NLEDP-------IDADLLIVDESSMVDT--WLASSLLA 477 (769)
T ss_pred -CCCCH------------------------------------HHCCC-------CCCCEEEEECCCHHHH--HHHHHHHH
T ss_conf -73211------------------------------------01134-------7877699814621889--99999986
Q ss_pred CCCCCCCCCEEEEEECHHH--HHHHCCCCCCHH-HHHHHCCCCCCEEEEEEECCC--CCHHHHHHHHHH
Q ss_conf 1112678875999953068--863113322013-455420576640678761267--514678752024
Q gi|254780952|r 257 QKEDSKQGARICCVGDENQ--CIYEWRGAQFSH-ILNFQKDFKDANIIKLEQNYR--STTHILNTANKL 320 (685)
Q Consensus 257 ~~~~~~~~~~l~vVGD~dQ--sIY~fRGA~~~~-~~~f~~~f~~~~~i~L~~NyR--S~~~Ii~~an~l 320 (685)
T Consensus 478 a---~P~~a~lllVGD~DQLPSV------~pG~VL~DLi~s-~~iP~~~LT~vyRQ~~~S~Ii~~Ah~~ 536 (769)
T TIGR01448 478 A---VPDHARLLLVGDADQLPSV------GPGQVLKDLIQS-KVIPVTRLTKVYRQAEGSSIITLAHKI 536 (769)
T ss_pred H---CCCCCEEEEECCCCCCCCC------CCCHHHHHHHHC-CCCCEEECCCEEEECCCCHHHHHHHHH
T ss_conf 1---7977779888376888988------644089999846-886612121112411366467888987