HHsearch alignment for GI: 254780952 and conserved domain: TIGR01450
>TIGR01450 recC exodeoxyribonuclease V, gamma subunit; InterPro: IPR006697 The exodeoxyribonuclease V enzyme is a multisubunit enzyme comprised of the proteins RecB (IPR004586 from INTERPRO), RecC (this family) and RecD (IPR006344 from INTERPRO). This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (3.1.11.5 from EC) catalyzes hydrolysis of single-stranded (ss) DNA or double-stranded (ds) DNA and unwinding of the ends of dsDNA . Its nuclease activity is controlled by Chi sites (5' G-C-T-G-G-T-G-G 3') in such a way that the enzyme produces a potent single-stranded DNA substrate for homologous pairing by RecA and single-stranded DNA binding proteins.; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.90 E-value=0.038 Score=33.45 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=64.2
Q ss_pred CCCEEEEEECCCCCCCCCEEEECCCCCCCCCCHHC------------------CCHHHHHHHHHHHHHHHHHHHHEEEEE
Q ss_conf 89369996113455669836984685766842212------------------996787899999999985864116998
Q gi|254780952|r 568 SNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQLS------------------INEGNVEGERRLAYVGITRAKKKCHLF 629 (685)
Q Consensus 568 ~d~V~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~------------------~~~~~~eEErRL~YVA~TRAk~~L~l~ 629 (685)
T Consensus 725 ~g~~~~~~~~p~~~~p~~~~cl~g~~~g~~p~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~l~l~~~~~~~~~~~~~ 804 (1207)
T TIGR01450 725 AGGVNFCTLVPMRSLPFRVVCLLGLNDGDYPRQEPPLGFDLLAKEPGTAQRRPGDRSRRDDDRYLFLEALLSAREVLYVS 804 (1207)
T ss_pred CCCCHHHHHHHHHHCCHHEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEE
T ss_conf 03320111100111340000133056455665433013445540234012033420000025789999876433321000
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHCCCH
Q ss_conf 3132112576543335556888723314783
Q gi|254780952|r 630 YTINRRTHDFTRVERYQPSQVSQFLLELYDP 660 (685)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~SrFl~El~~~ 660 (685)
T Consensus 805 ~~g~~-------~~~~~~~~p~~~~~~l~~~ 828 (1207)
T TIGR01450 805 YVGRD-------IRDNSERPPSVLLGELLDY 828 (1207)
T ss_pred EECCC-------CCCCCCCCCHHHHHHHHHH
T ss_conf 10443-------1256432532578999998