HHsearch alignment for GI: 254780952 and conserved domain: TIGR01967
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=93.43 E-value=0.022 Score=35.17 Aligned_cols=60 Identities=28% Similarity=0.419 Sum_probs=34.3
Q ss_pred CHHHHHHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHC------CCCCHHHEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 988999985389896699958-8988358999999999980------89997886762114799999999999851645
Q gi|254780952|r 31 NAQQTHAVTIPDDTPLLILAG-AGTGKTTVLIARMLHLICH------KEIPPSKILAMTFTNQAIQEMKNRLACYLGEK 102 (685)
Q Consensus 31 n~~Q~~av~~~~~~~~lV~Ag-aGsGKT~~L~~ri~~Ll~~------~~~~p~~Il~iTFT~~AA~el~~Ri~~~l~~~ 102 (685)
T Consensus 74 RedI~~AI~~n---QVviiAGETGSGKTTQLPKICLEL-GrG~~GlIGHTQPRRlA--------AR~VA~R~AeELgtp 140 (1320)
T TIGR01967 74 REDIAKAIAEN---QVVIIAGETGSGKTTQLPKICLEL-GRGSRGLIGHTQPRRLA--------ARSVAERVAEELGTP 140 (1320)
T ss_pred HHHHHHHHHHC---CEEEEECCCCCCCCCCCHHHHHHH-CCCCCCCCCCCCHHHHH--------HHHHHHHHHHHHCCC
T ss_conf 89999999848---989997244876202321677754-27876541247146889--------999999999983889