HHsearch alignment for GI: 254780952 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=94.85 E-value=0.028 Score=34.38 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=4.6
Q ss_pred HHHHCCCCCHHHE
Q ss_conf 9998089997886
Q gi|254780952|r 66 HLICHKEIPPSKI 78 (685)
Q Consensus 66 ~Ll~~~~~~p~~I 78 (685)
T Consensus 36 ~L~~~~~l~~~~l 48 (577)
T TIGR02538 36 YLIQNGLLDAKQL 48 (577)
T ss_pred HHHHHCCCCHHHH
T ss_conf 9986147788999