HHsearch alignment for GI: 254780952 and conserved domain: TIGR02760
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI; InterPro: IPR014129 This entry represents TraI, which is a component of the relaxosome complex. In the process of conjugative plasmid transfer the relaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein ..
Probab=94.74 E-value=0.028 Score=34.40 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=52.1
Q ss_pred HHHHCCCHHHHHHHHCC---CCCCEEEEECCCCCHHHHHHH----HHHHHHHCCCCCHHHEEEEEECHHHHHHHHHH
Q ss_conf 88762998899998538---989669995889883589999----99999980899978867621147999999999
Q gi|254780952|r 25 NYLKGLNAQQTHAVTIP---DDTPLLILAGAGTGKTTVLIA----RMLHLICHKEIPPSKILAMTFTNQAIQEMKNR 94 (685)
Q Consensus 25 ~~l~~Ln~~Q~~av~~~---~~~~~lV~AgaGsGKT~~L~~----ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~R 94 (685)
T Consensus 1127 ~~~~~lT~Gqk~a~~li~~T~DrFv~~QGlAGvGK~T~~~sr~l~~~~~~~~~~~~~~~~~iGLAPTH~AV~El~~~ 1203 (2193)
T TIGR02760 1127 ELLETLTHGQKQAIHLIVSTKDRFVAVQGLAGVGKTTMLESRDLEVVKAVKQAAESEQLQVIGLAPTHEAVGELKAA 1203 (2193)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 45355335667886410002362689821137782676553150467888873046886575137751677888860