HHsearch alignment for GI: 254780952 and conserved domain: TIGR03345

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

Probab=90.79  E-value=0.62  Score=25.14  Aligned_cols=68  Identities=24%  Similarity=0.408  Sum_probs=43.5

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCC----CC---CEEE
Q ss_conf             96699958898835899999999998089997----8867621147999-----9999999985164----58---7896
Q gi|254780952|r   44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGE----KI---PRIQ  107 (685)
Q Consensus        44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~----~~---~~i~  107 (685)
T Consensus       209 NNPiLVGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~sLDlg~LvAGtkyRGeFEeRlk~ii~ei~~~~~~iILFID  287 (852)
T TIGR03345       209 NNPILTGEAGVGKTA-VVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFID  287 (852)
T ss_pred             CCCEEECCCCCCHHH-HHHHHHHHHHCCCCCHHHHCCEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             997465799987999-9999999997699986774385678678888640357635999999999999848997699963


Q ss_pred             EHHHH
Q ss_conf             17899
Q gi|254780952|r  108 TFHSF  112 (685)
Q Consensus       108 T~Hsf  112 (685)
T Consensus       288 EiHtl  292 (852)
T TIGR03345       288 EAHTL  292 (852)
T ss_pred             HHHHH
T ss_conf             48775