HHsearch alignment for GI: 254780952 and conserved domain: TIGR03346
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.09 E-value=0.53 Score=25.61 Aligned_cols=68 Identities=22% Similarity=0.432 Sum_probs=43.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCH----HHEEEEEECHHHH-----HHHHHHHHHHCCC----CC---CEEE
Q ss_conf 96699958898835899999999998089997----8867621147999-----9999999985164----58---7896
Q gi|254780952|r 44 TPLLILAGAGTGKTTVLIARMLHLICHKEIPP----SKILAMTFTNQAI-----QEMKNRLACYLGE----KI---PRIQ 107 (685)
Q Consensus 44 ~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p----~~Il~iTFT~~AA-----~el~~Ri~~~l~~----~~---~~i~ 107 (685)
T Consensus 195 NNpiLVGepGVGKTA-IvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGeFEeRlk~ii~ev~~~~~~iILFID 273 (852)
T TIGR03346 195 NNPVLIGEPGVGKTA-IVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFID 273 (852)
T ss_pred CCCCEECCCCCCHHH-HHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 897212799987999-9999999986699997885185127528877521530078999999999999858998799961
Q ss_pred EHHHH
Q ss_conf 17899
Q gi|254780952|r 108 TFHSF 112 (685)
Q Consensus 108 T~Hsf 112 (685)
T Consensus 274 EiHtl 278 (852)
T TIGR03346 274 ELHTL 278 (852)
T ss_pred HHHHH
T ss_conf 25553