HHsearch alignment for GI: 254780952 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.72 E-value=0.024 Score=34.87 Aligned_cols=52 Identities=31% Similarity=0.470 Sum_probs=34.4
Q ss_pred CCCCEEEE-ECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHHHHHHHHHHH
Q ss_conf 98966999-588988358999999999980899978867621147999999999998
Q gi|254780952|r 42 DDTPLLIL-AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLAC 97 (685)
Q Consensus 42 ~~~~~lV~-AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA~el~~Ri~~ 97 (685)
T Consensus 28 ~~GeL~viaarpg~GKT~f~~~~a~~~~~~~g---~~vl~~Sl-Em~~~~~~~Rlls 80 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHG---VRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEEEC-CCCHHHHHHHHHH
T ss_conf 99808999968998699999999999999769---90899970-4999999999999