HHsearch alignment for GI: 254780952 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.43 E-value=0.042 Score=33.22 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=22.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 669995889883589999999999808999788676211
Q gi|254780952|r 45 PLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 45 ~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
T Consensus 1 H~lvig~tGsGKt~~~v--ip~ll~~----~~s~vv~D~ 33 (384)
T cd01126 1 HVLVFAPTRSGKGVGFV--IPNLLTW----PGSVVVLDP 33 (384)
T ss_pred CEEEECCCCCCHHHHHH--HHHHHHC----CCCEEEEEC
T ss_conf 97998899997318999--9999818----998899948