HHsearch alignment for GI: 254780952 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.31 E-value=0.061 Score=32.09 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89669995889883589999999999808
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHK 71 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~ 71 (685)
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg 70 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARG 70 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 27479988999988999999999999869