HHsearch alignment for GI: 254780952 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=94.31  E-value=0.061  Score=32.09  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             89669995889883589999999999808
Q gi|254780952|r   43 DTPLLILAGAGTGKTTVLIARMLHLICHK   71 (685)
Q Consensus        43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~   71 (685)
T Consensus        42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg   70 (410)
T cd01127          42 EAHTMIIGTTGTGKTTQIRELLASIRARG   70 (410)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             27479988999988999999999999869