HHsearch alignment for GI: 254780952 and conserved domain: cd01128

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.88  E-value=0.35  Score=26.88  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=19.2

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             989669995889883589999999999
Q gi|254780952|r   42 DDTPLLILAGAGTGKTTVLIARMLHLI   68 (685)
Q Consensus        42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll   68 (685)
T Consensus        15 kGQR~gI~g~~gvGKT~Ll~~-i~~~~   40 (249)
T cd01128          15 KGQRGLIVAPPKAGKTTLLQS-IANAI   40 (249)
T ss_pred             CCCEEEEECCCCCCHHHHHHH-HHHHH
T ss_conf             786778878999889999999-99999