HHsearch alignment for GI: 254780952 and conserved domain: cd01128
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.88 E-value=0.35 Score=26.88 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=19.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 989669995889883589999999999
Q gi|254780952|r 42 DDTPLLILAGAGTGKTTVLIARMLHLI 68 (685)
Q Consensus 42 ~~~~~lV~AgaGsGKT~~L~~ri~~Ll 68 (685)
T Consensus 15 kGQR~gI~g~~gvGKT~Ll~~-i~~~~ 40 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQS-IANAI 40 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHH
T ss_conf 786778878999889999999-99999