HHsearch alignment for GI: 254780952 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.82 E-value=0.016 Score=36.10 Aligned_cols=39 Identities=36% Similarity=0.411 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 136832158887629988999985389896699958898835899999
Q gi|254780952|r 16 GDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIAR 63 (685)
Q Consensus 16 ~~~~~~~~~~~l~~Ln~~Q~~av~~~~~~~~lV~AgaGsGKT~~L~~r 63 (685)
T Consensus 7 ~G~~~~~~~~~L~-------~~v~--~~~nIlIsG~tGSGKTTll~al 45 (186)
T cd01130 7 QGTFSPLQAAYLW-------LAVE--ARKNILISGGTGSGKTTLLNAL 45 (186)
T ss_pred CCCCCHHHHHHHH-------HHHH--CCCCEEEECCCCCCHHHHHHHH
T ss_conf 6999999999999-------9998--5998999899999899999999