HHsearch alignment for GI: 254780952 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=96.97 E-value=3.3e-05 Score=54.46 Aligned_cols=49 Identities=29% Similarity=0.386 Sum_probs=34.7
Q ss_pred EEEEECCCCCCCCCEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHEEEEE
Q ss_conf 9996113455669836984685766842212996787899999999985864116998
Q gi|254780952|r 572 QIMTLHAAKGLEFDTVFISGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLF 629 (685)
Q Consensus 572 ~i~TIH~SKGLEfd~V~i~gl~~g~~P~~~~~~~~~~eEErRL~YVA~TRAk~~L~l~ 629 (685)
T Consensus 177 ~~~tv~e~qG~tf~~V~l~~~~~~~---------~~~~~~~~~~~VALTRh~~~l~i~ 225 (226)
T pfam01443 177 RATTVHEVQGLTFDSVTLVLDKDTD---------LLSISDPELLYVALTRHRKSLHIL 225 (226)
T ss_pred CCCCHHHCEEEECCCEEEEECCCCC---------CCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 8202557626771609999788986---------543358676899825467678997