HHsearch alignment for GI: 254780952 and conserved domain: pfam02534
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=91.02 E-value=0.085 Score=31.10 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=24.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEE
Q ss_conf 89669995889883589999999999808999788676211
Q gi|254780952|r 43 DTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTF 83 (685)
Q Consensus 43 ~~~~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTF 83 (685)
T Consensus 44 ~~H~lviaptgsGKt~~~V--iPnLl~~----~~S~VV~Dp 78 (468)
T pfam02534 44 FSHVLVFAGTGSGKGVGVV--IPNLLVW----KGSIVVLDP 78 (468)
T ss_pred CCEEEEECCCCCCCCCCCH--HHHHHHC----CCCEEEEEC
T ss_conf 7679998489997234242--9888518----997899948