HHsearch alignment for GI: 254780952 and conserved domain: pfam04466
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=92.30 E-value=0.25 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=28.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEEECHHHH
Q ss_conf 6999588988358999999999980899978867621147999
Q gi|254780952|r 46 LLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAI 88 (685)
Q Consensus 46 ~lV~AgaGsGKT~~L~~ri~~Ll~~~~~~p~~Il~iTFT~~AA 88 (685)
T Consensus 5 ~v~~GGrgsgKS~~~a~~~i~~~~~---~~~~~l~~r~~~~sl 44 (387)
T pfam04466 5 KVAKGGRGSGKSYHIALKLVLKLLM---HPRTNLVIREVKNTI 44 (387)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHH
T ss_conf 9999088867999999999999987---898699997556889