HHsearch alignment for GI: 254780952 and conserved domain: pfam05496

>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.

Probab=93.76  E-value=0.15  Score=29.36  Aligned_cols=50  Identities=18%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             CCCCCCCHHHHH--HCCCHHHHHHHHCCC-----CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf             136832158887--629988999985389-----8966999588988358999999999980
Q gi|254780952|r   16 GDFVPSCVPNYL--KGLNAQQTHAVTIPD-----DTPLLILAGAGTGKTTVLIARMLHLICH   70 (685)
Q Consensus        16 ~~~~~~~~~~~l--~~Ln~~Q~~av~~~~-----~~~~lV~AgaGsGKT~~L~~ri~~Ll~~   70 (685)
T Consensus        16 ~~lRP~~l~e~vGQehl~~~l~~~i~a~~~~~~~l~h~lf~GPPG~GKTT-----lAriiAk   72 (234)
T pfam05496        16 RSLRPRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTT-----LANIIAN   72 (234)
T ss_pred             HCCCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHH-----HHHHHHH
T ss_conf             55498976660694999999999999887427776627887899998889-----9999998