RPSBLAST alignment for GI: 254780952 and conserved domain: COG1074
>gnl|CDD|31272 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]. Length = 1139
Score = 144 bits (365), Expect = 6e-35
Identities = 104/528 (19%), Positives = 174/528 (32%), Gaps = 100/528 (18%)
Query: 191 KAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPH--VLKKYHEKIPYIMVDEYQDINTPQ 248
+ + +Y A ++ + DF LI + ++L + + E+ P+I++DE+QD + Q
Sbjct: 335 EELIERYDAEKRQRNALDFDDLIHRLAKLLTSEGEELAESLREQYPHILIDEFQDTDPQQ 394
Query: 249 YLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANIIKLEQNYR 308
+ +L L + VGD Q IY +RGA L K I LE NYR
Sbjct: 395 WRILSRLFAGFKAGNRTLFL-VGDPKQSIYRFRGADIFTFLEAASSEKAFARITLETNYR 453
Query: 309 STTHILNTANKLISHNKQRFDK---------------------------KLFTQRDCHDD 341
ST +LN N L + F + +
Sbjct: 454 STPELLNAVNALFKQAMFAYPGEIDYDPVAELGARNGSPGSVNGEPLPALKFWEEEDDWT 513
Query: 342 AKVSIHVSQSDN-SELSTIIQEIINIQNTG--------MSLNNIAILVRTSWQTRKFEDA 392
A + + E I + + + +IA+LVR+ + E A
Sbjct: 514 APENEEDEREIADLEARQIAAWLRELIEGEAVLDGERPIRAGDIAVLVRSRNEAAAIERA 573
Query: 393 FLEQEIPHKVIGG---SFYDRQEIRDALAYFRLVCQEHRDEDFKRIINCPKRGIGKESLH 449
+ I V S ++ E +D LA R + D ++ P G+ ++ L
Sbjct: 574 LKKAGII-PVYLSNRSSLFETLEAQDLLALLRAILNPEDDLPLAALLRSPLFGLTEDDLA 632
Query: 450 KIQYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRRWNNCSKKMDPAPIANMI 509
L E + + + F + W +K +
Sbjct: 633 ------------ALAQDEAEWEFLWENLRQLADIWRFRGVLAMWRALAKITPLHDLIAER 680
Query: 510 LEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHET-----LEGFVLQAPLRENLGSF 564
L + N + L+ELL+ +E LE F+ +
Sbjct: 681 LLSTNLGERDLTNGL-----HAQELLQELLTRALSYEHGLLRWLERFI-ALIENNDEEQA 734
Query: 565 I---PDSNCIQIMTLHAAKGLEFDTVFISG-------------------------WEQGL 596
D + ++IMT+H +KGLEF VF+ +
Sbjct: 735 RRLESDRDLVRIMTIHKSKGLEFPIVFLPFILSKRFNDSDVPLLVYYDGLRFELFDDLKS 794
Query: 597 LPHQLS------INEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHD 638
P S E + E RL YV +TRAK++ L ++R
Sbjct: 795 YPTPESQANKELAEEEALAEELRLLYVALTRAKEQLILIGAPSKREKS 842