BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus
Liberibacter asiaticus str. psy62]
(685 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/685 (100%), Positives = 685/685 (100%)
Query: 1 MQQDDQKSHFSHILKGDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVL 60
MQQDDQKSHFSHILKGDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVL
Sbjct: 1 MQQDDQKSHFSHILKGDFVPSCVPNYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVL 60
Query: 61 IARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFHSFCASILRKH 120
IARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFHSFCASILRKH
Sbjct: 61 IARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLACYLGEKIPRIQTFHSFCASILRKH 120
Query: 121 GEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQ 180
GEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQ
Sbjct: 121 GEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEKIDYWQNRGWNPKDIPQ 180
Query: 181 SSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDE 240
SSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDE
Sbjct: 181 SSLTEDAEIPKAIYIQYVAYLQKTKSCDFGGLIIKTIEVLHHPHVLKKYHEKIPYIMVDE 240
Query: 241 YQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANI 300
YQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANI
Sbjct: 241 YQDINTPQYLLLRLLCQKEDSKQGARICCVGDENQCIYEWRGAQFSHILNFQKDFKDANI 300
Query: 301 IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTII 360
IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTII
Sbjct: 301 IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQRDCHDDAKVSIHVSQSDNSELSTII 360
Query: 361 QEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGGSFYDRQEIRDALAYF 420
QEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGGSFYDRQEIRDALAYF
Sbjct: 361 QEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFLEQEIPHKVIGGSFYDRQEIRDALAYF 420
Query: 421 RLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIR 480
RLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIR
Sbjct: 421 RLVCQEHRDEDFKRIINCPKRGIGKESLHKIQYHASQHHISLLQASEKLIDSGQFRPQIR 480
Query: 481 QSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLS 540
QSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLS
Sbjct: 481 QSLQNFVKDIRRWNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLS 540
Query: 541 IIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQ 600
IIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQ
Sbjct: 541 IIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQ 600
Query: 601 LSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP 660
LSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP
Sbjct: 601 LSINEGNVEGERRLAYVGITRAKKKCHLFYTINRRTHDFTRVERYQPSQVSQFLLELYDP 660
Query: 661 SHTQEIIYDDIYGTFSEHWNQIPEP 685
SHTQEIIYDDIYGTFSEHWNQIPEP
Sbjct: 661 SHTQEIIYDDIYGTFSEHWNQIPEP 685
>537021.9.peg.410_1
Length = 952
Score = 61.2 bits (147), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 113/476 (23%), Positives = 190/476 (39%), Gaps = 93/476 (19%)
Query: 203 KTKSC--DFGGLIIKTIEVLHHPHVLK----KYHEKIPYIMVDEYQDINTPQYLLLRLLC 256
K K+C DF LII T ++L V K ++I +I++DE QD + Q+ ++R L
Sbjct: 141 KKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLT 200
Query: 257 Q-----KEDSKQGARICCVGDENQCIYEWRGAQFSHILN----FQKDFKDA----NIIKL 303
+ K + VGDE Q IY + GA+ +L QK +A +II+L
Sbjct: 201 EDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIEL 260
Query: 304 EQNYRSTTHILNTANKLIS-----------------HNKQRFDK----KLFTQRDCHDDA 342
++RST IL +K+ S H R + +L+ Q D+
Sbjct: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDS 320
Query: 343 KVSIHVSQSDNSELSTIIQE-------------IINIQNTGMSLNN----------IAIL 379
+ + +S S ++ QE I N+ T +N I +L
Sbjct: 321 QCNPQ-QESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVL 379
Query: 380 VRTSWQTR--KFEDAFLEQEIPHKVIGGSFY---DRQEIRDALAYFRLVCQEHRDEDFKR 434
VR T F FL+ + V+G + D I+D +A R + + D F
Sbjct: 380 VRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVC 439
Query: 435 IINCPKRGIGKESLHKI--QYHASQHHISLLQASEKLIDSGQFRPQIRQSLQNFVKDIRR 492
++ P ++ + KI Q H ++ ++ + +K + G + Q+ +K I
Sbjct: 440 MLKSPLFNFSEDDIFKICTQRHETE---TVYEYIQKFANCGISK------FQHVIKYIHE 490
Query: 493 WNNCSKKMDPAPIANMILEQSGYMAMWKNNKSSEKSQERLDNLRELLSIIEKHETLEGFV 552
+ ++ P +IL + S E +D L E L+ ++E
Sbjct: 491 LIHIAQFCSPHDFFTLILGAKKGRQQF----ISRFGNEVIDVLDEFLNFTLRNEQNSYSS 546
Query: 553 LQAPLRENLGSFIP--------DSNCIQIMTLHAAKGLEFDTVFISGWEQGLLPHQ 600
LQ + E L + P + N ++IMT+H AKGLE VF+ + H+
Sbjct: 547 LQELISE-LEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHK 601
>537021.9.peg.409_1
Length = 242
Score = 32.7 bits (73), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTII----KQLLKDLQIDDKD 155
++QT H+FC +I+++ + + FAI D +S+ +I K L + +D+ +
Sbjct: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
>gi|254780225|ref|YP_003064638.1| peptidyl-tRNA hydrolase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 189
Score = 26.9 bits (58), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 515 YMAMWKNNKSSEKSQERLDNLRELLSIIEKHETLEGFVLQAPLRENLGSFIPDSNCIQIM 574
+ WK +E S+ +LD LR +I+ K +T Q+ L + +F N +
Sbjct: 34 FFPAWKKKFHAEISEGQLDGLR---TILIKPQTFMNLSGQSLLE--VMNFYKLPNLENYL 88
Query: 575 TLHAAKGLEFDTVFI-SGWEQGLLPHQLSINEGNVEGERRLAYVGITRAKKKCHLFYTIN 633
+H L+F T+ + +G SI+E + +RL +GI R H+ I
Sbjct: 89 VIHDDLDLDFGTLRLKTGGGDAGHNGLKSISEKCGKNYKRLR-IGIGRPPDTAHI---IR 144
Query: 634 RRTHDFTRVERYQPSQVSQFLLELYD 659
+F+ ERY FLL + D
Sbjct: 145 HVLGNFSSPERY-------FLLPIID 163
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 286 SHILNFQKDFKDANI------IKLEQNYRSTTHILNTANKLISHNKQRFDKKLFTQR 336
S I Q D K I + L+Q R HILN +K++S ++ + + FT R
Sbjct: 498 SGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSESRLQLGE--FTPR 552
>gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str.
psy62]
Length = 483
Score = 26.2 bits (56), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 340 DDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLN 374
D ++S + SQS E++T++ EI++++ MSL+
Sbjct: 74 DITQLSQYDSQSARDEIATLMNEIVSVKKITMSLD 108
>gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 77
Score = 25.4 bits (54), Expect = 3.0, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 269 CVGDENQCIYEWRGAQFSHILNFQ-KDFKDANIIKLEQNYRSTTHILNTANKLISHNKQR 327
C+ +C+ E + HI N + N++ + RST H+ + A+ LIS+ K++
Sbjct: 19 CIATVMECLKELKAEDICHIENTSLRSLICDNMVIVSG--RSTKHVASIADNLISYLKKK 76
>gi|254780617|ref|YP_003065030.1| F0F1 ATP synthase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
Length = 509
Score = 25.0 bits (53), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%)
Query: 335 QRDCHDDAKVSIHVSQSDNSELSTIIQEIINIQNTGMSLNNIAILVRTSWQTRKFEDAFL 394
QR C + I QS LST I+ I ++ G + I R + +T D FL
Sbjct: 125 QRSCTEADAPGIIQRQSVCEPLSTGIKAIDSLIPIGRGQRELIIGDRKTGKTSIILDTFL 184
Query: 395 EQEIPH 400
Q+ H
Sbjct: 185 NQKSSH 190
>gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus
Liberibacter asiaticus str. psy62]
Length = 675
Score = 24.6 bits (52), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 368 NTGMSLNNIAILVRTSWQTRKFEDA 392
TG++LN A LV+T+ ++EDA
Sbjct: 454 TTGLNLNTFAHLVKTNSAPEEWEDA 478
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 24.3 bits (51), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 542 IEKHETLEGFVLQAPLRENLGSFI 565
+E H++L G + Q PLREN S +
Sbjct: 198 VEFHKSL-GTITQIPLRENFSSLV 220
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,893
Number of Sequences: 1233
Number of extensions: 19786
Number of successful extensions: 58
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 18
length of query: 685
length of database: 328,796
effective HSP length: 80
effective length of query: 605
effective length of database: 230,156
effective search space: 139244380
effective search space used: 139244380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 42 (20.8 bits)