HHsearch alignment for GI: 254780953 and conserved domain: PRK06667
>PRK06667 motB flagellar motor protein MotB; Validated.
Probab=100.00 E-value=5.1e-34 Score=209.71 Aligned_cols=136 Identities=23% Similarity=0.352 Sum_probs=117.5
Q ss_pred HHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCC-HHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCC-----CHH
Q ss_conf 999720178358860875899852211128-813109-9999999999999985899--4899998037787-----200
Q gi|254780953|r 54 FQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLE-KKFLPMLQLIATILNKFPS--TVIAIQSHTDSIG-----TLK 124 (190)
Q Consensus 54 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~-~~~~~~L~~ia~~l~~~~~--~~i~I~GHTD~~g-----~~~ 124 (190)
T Consensus 103 ~~~~~~~~~v~i~~~~~gl~i~l~~~~lF~~gsa~l~~~~~~~~l~~l~~il~~~~~~~~~I~VeGHTD~~pi~~~~~~~ 182 (254)
T PRK06667 103 FKPEIQSNKVAVTEDERGLVISLVSDAFFYPGSADVKLEENRDLIQKLASFIGFLDLAGYNFRIEGHTDNVDVNPEGAWK 182 (254)
T ss_pred HHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 88776438748997499799996068561799731264748999999999998456757428999437877668788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf 11122589999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r 125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK 189 (190)
Q Consensus 125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k 189 (190)
T Consensus 183 sNWeLSsaRA~~V~~~l~~~g~i~~~rl~v~Gygd~~P~~~n~t~e~ra~NRRVeI~Il~~~~~~ 247 (254)
T PRK06667 183 SNWELSGARAVNMLEYILNYEDQSESWFEVSGFGGSRPLATDDTPEGRAYNRRIDIVILTEASLS 247 (254)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEECHHHHH
T ss_conf 62889999999999999981799954599985458876899959668840897699995746664