HHsearch alignment for GI: 254780953 and conserved domain: PRK06667

>PRK06667 motB flagellar motor protein MotB; Validated.
Probab=100.00  E-value=5.1e-34  Score=209.71  Aligned_cols=136  Identities=23%  Similarity=0.352  Sum_probs=117.5

Q ss_pred             HHHHHCCCCCEEEEECCEEEEEECCCEECC-CHHHCC-HHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCC-----CHH
Q ss_conf             999720178358860875899852211128-813109-9999999999999985899--4899998037787-----200
Q gi|254780953|r   54 FQMQLQDTGIVVSRIGDMITCYIPVHVSFV-SEVFLE-KKFLPMLQLIATILNKFPS--TVIAIQSHTDSIG-----TLK  124 (190)
Q Consensus        54 l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~-~~~~~~L~~ia~~l~~~~~--~~i~I~GHTD~~g-----~~~  124 (190)
T Consensus       103 ~~~~~~~~~v~i~~~~~gl~i~l~~~~lF~~gsa~l~~~~~~~~l~~l~~il~~~~~~~~~I~VeGHTD~~pi~~~~~~~  182 (254)
T PRK06667        103 FKPEIQSNKVAVTEDERGLVISLVSDAFFYPGSADVKLEENRDLIQKLASFIGFLDLAGYNFRIEGHTDNVDVNPEGAWK  182 (254)
T ss_pred             HHHHHHCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             88776438748997499799996068561799731264748999999999998456757428999437877668788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHHC
Q ss_conf             11122589999999988852387451699997034588899769779852991699993010113
Q gi|254780953|r  125 NNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNIK  189 (190)
Q Consensus       125 ~N~~LS~~RA~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~k  189 (190)
T Consensus       183 sNWeLSsaRA~~V~~~l~~~g~i~~~rl~v~Gygd~~P~~~n~t~e~ra~NRRVeI~Il~~~~~~  247 (254)
T PRK06667        183 SNWELSGARAVNMLEYILNYEDQSESWFEVSGFGGSRPLATDDTPEGRAYNRRIDIVILTEASLS  247 (254)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCEEEEEECHHHHH
T ss_conf             62889999999999999981799954599985458876899959668840897699995746664