HHsearch alignment for GI: 254780953 and conserved domain: PRK07734

>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=100.00  E-value=1.7e-34  Score=212.38  Aligned_cols=130  Identities=23%  Similarity=0.314  Sum_probs=115.6

Q ss_pred             CCCCCEEEEECCEEEEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----CHHHHHHHHHHH
Q ss_conf             0178358860875899852211128-81310999999999999999858994899998037787----200111225899
Q gi|254780953|r   59 QDTGIVVSRIGDMITCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIG----TLKNNLLISQER  133 (190)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g----~~~~N~~LS~~R  133 (190)
T Consensus       123 l~~~v~v~~~~~Gl~I~l~~~~lF~~GsA~l~~~~~~lL~~ia~~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaR  202 (259)
T PRK07734        123 LSSSLQTKLTEEGLLVTILDNILFDSGKADVRLEDLPLAKEMSNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMR  202 (259)
T ss_pred             CCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             03653799748837999537766688987569779999999999998579963899985577666677676448999999


Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEECCHHH
Q ss_conf             9999998885238745169999703458889976977985299169999301011
Q gi|254780953|r  134 ADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGNI  188 (190)
Q Consensus       134 A~~V~~~L~~~g~~~~r~i~v~g~G~~~p~~~n~~~~~ra~NRRVei~i~~~~~~  188 (190)
T Consensus       203 A~sV~~~L~~~~gi~~~rl~v~G~gd~~Pi~~n~t~egra~NRRVeI~il~~~~~  257 (259)
T PRK07734        203 AVNFMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILPLTEK  257 (259)
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEECCCCC
T ss_conf             9999999998169995679999855787489996920142178679999576302