HHSEARCH alignment of GI: 254780953 and SCOP domain: d1r1ma_

Alignment
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=99.96  E-value=9.4e-30  Score=183.34  Aligned_cols=111  Identities=23%  Similarity=0.307  Sum_probs=102.6

Q ss_pred             EEEECCCEECC-CHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf             99852211128-81310999999999999999858994899998037787200111225899999999888523874516
Q gi|254780953|r   73 TCYIPVHVSFV-SEVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRF  151 (190)
Q Consensus        73 ~~~~~~~~~f~-~~a~l~~~~~~~L~~ia~~l~~~~~~~i~I~GHTD~~g~~~~N~~LS~~RA~~V~~~L~~~g~~~~r~  151 (190)
                      .+.++..+||+ +++.|+++++..|++++..|+.+|...|.|+||||+.|+.+|||.||.+||++|++||+..|+++.| 
T Consensus         7 ~i~l~~~~~F~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r-   85 (140)
T d1r1ma_           7 TISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSR-   85 (140)
T ss_dssp             EEEEEHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGG-
T ss_pred             EEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE-
T ss_conf             7997773066289742798999999999998721997089999860654421210367889999999999975999375-


Q ss_pred             EEEEEECCCCCCCCCCCHHHHHC--------------------CCCEEEEEEC
Q ss_conf             99997034588899769779852--------------------9916999930
Q gi|254780953|r  152 ISVRGFAYKYPIDTNDTKVGRQN--------------------NQRIEIQIFP  184 (190)
Q Consensus       152 i~v~g~G~~~p~~~n~~~~~ra~--------------------NRRVei~i~~  184 (190)
                      |.+.|||+++|+.+|.++.+++.                    ||||||.|-+
T Consensus        86 i~~~g~Ge~~P~~~n~~~~~~~~~~~~~~~~~nr~~~i~~~~~nRRVEi~v~~  138 (140)
T d1r1ma_          86 ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS  138 (140)
T ss_dssp             EEEEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEE
T ss_pred             EEEEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf             99999725787788969889853022012332025555046899858999982


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: OmpA-like
family: OmpA-like
domain: Outer membrane protein class 4, RmpM, C-terminal domain
species: Neisseria meningitidis [TaxId: 487]