RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780953|ref|YP_003065366.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] (190 letters) >2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:) Length = 149 Score = 91.7 bits (227), Expect = 6e-20 Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 2/140 (1%) Query: 47 LDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNK 105 +D E + + +++ TG+ V+R GD I +P +V+F S L+ L +A +L + Sbjct: 3 MDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKE 62 Query: 106 FPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDT 165 +P T + + +TDS G N+ +SQ+RAD + S LI +GV ++R I +G PI + Sbjct: 63 YPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASR-IRTQGLGPANPIAS 121 Query: 166 NDTKVGRQNNQRIEIQIFPR 185 N T G+ N+R+EI + P Sbjct: 122 NSTAEGKAQNRRVEITLSPL 141 >3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} (A:) Length = 169 Score = 84.1 bits (207), Expect = 1e-17 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 2/139 (1%) Query: 48 DKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKF 106 ++ + LQ I GD T IP F L + P L + +LN + Sbjct: 24 RDSKRKIIRDLQKQDIQYVEYGDTRTLIIPTDKYFXFSSPRLNEICYPGLNNVIRLLNFY 83 Query: 107 PSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTN 166 P + I + TD++G+ + +SQ +A+ ++L G+++ R + G+ K I N Sbjct: 84 PQSTIYVAGFTDNVGSRSHKRKLSQAQAETXXTFLWANGIAAKR-LKAEGYGDKNAISDN 142 Query: 167 DTKVGRQNNQRIEIQIFPR 185 G N+RIEIQ F Sbjct: 143 AIIHGSAQNRRIEIQWFTS 161 >3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} (A:) Length = 174 Score = 82.1 bits (202), Expect = 5e-17 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 7/152 (4%) Query: 40 NKRFGSSLDKAEDEFQMQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQL 98 + + ++ F + + I +IT +P V F V L +L Sbjct: 13 IEAQRQTYNEXRTYFTVNGVEGVIGAVFDEGVITLRVPSEVLFAPGAVELAPGADRVLAT 72 Query: 99 IATILNKFPSTVIAIQSHTDSIGT-----LKNNLLISQERADVIKSYLIQRGVSSNRFIS 153 + + + I I+ TD + K+N +S R+ + Y + G+ R ++ Sbjct: 73 LKDLFIRRREQNINIKGFTDDVQPSANARFKDNWEVSALRSVNVLRYFLGAGIEPAR-LT 131 Query: 154 VRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185 G P+ N + R N+R+E + R Sbjct: 132 ATGLGELDPLFPNTSDENRARNRRVEFVLERR 163 >2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:) Length = 134 Score = 77.5 bits (190), Expect = 1e-15 Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 2/126 (1%) Query: 56 MQLQDTGIVVSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKFPSTVIAIQ 114 V F + + +++ +L A LN P+ + ++ Sbjct: 8 AAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVE 67 Query: 115 SHTDSIGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQN 174 +TD GT + N+ + Q RAD +K YL +GV + + + + + P + Sbjct: 68 GNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGK-LGTVSYGEEKPAVLGHDEAAYSK 126 Query: 175 NQRIEI 180 N+R + Sbjct: 127 NRRAVL 132 >2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A (A:) Length = 183 Score = 75.6 bits (185), Expect = 4e-15 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 10/146 (6%) Query: 47 LDKAEDEFQMQLQDTGIVVSRIGDMITCY-IPVHVSFVS-EVFLEKKFLPMLQLIATILN 104 L +++ + + I + + G I F + +E +L+ IA +LN Sbjct: 28 LIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLN 87 Query: 105 KFPSTVIAIQSHTDS-----IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAY 159 P+ I++ HTD +N +S +RA+ + L+ G+ + + + V G A Sbjct: 88 GIPNR-ISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAA 146 Query: 160 KYPIDTNDTKVGRQNNQRIEIQIFPR 185 + N+RI + + + Sbjct: 147 TMRLSDRGP--DDAINRRISLLVLNK 170 >2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:) Length = 118 Score = 75.5 bits (185), Expect = 4e-15 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 88 LEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGVS 147 + F ML A L PS + ++ H D GT + N+ + + RA+ +K YL +GVS Sbjct: 17 IRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVS 76 Query: 148 SNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185 + IS+ + + P + N+R + Sbjct: 77 A-DQISIVSYGKEKPAVLGHDEAAYSKNRRAVLVYLEH 113 >2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium} (A:) Length = 210 Score = 75.2 bits (184), Expect = 5e-15 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 10/147 (6%) Query: 46 SLDKAEDEFQMQLQDTGIVVSRIGDMITCY-IPVHVSFVS-EVFLEKKFLPMLQLIATIL 103 L +++ + + I + + G I F + +E +L+ IA +L Sbjct: 38 QLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPXFKTGSAEVEPYXRDILRAIAPVL 97 Query: 104 NKFPSTVIAIQSHTDS-----IGTLKNNLLISQERADVIKSYLIQRGVSSNRFISVRGFA 158 N P+ + + HTD +N +S +RA+ + L+ G+ + + + V G A Sbjct: 98 NGIPNRIS-LAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGXA 156 Query: 159 YKYPIDTNDTKVGRQNNQRIEIQIFPR 185 + N+RI + + + Sbjct: 157 ATXRLSDRGP--DDAINRRISLLVLNK 181 >1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} (A:) Length = 164 Score = 74.8 bits (183), Expect = 6e-15 Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 2/122 (1%) Query: 65 VSRIGDMITCYIPVHVSFVS-EVFLEKKFLPMLQLIATILNKFPSTVIAIQSHTDSIGTL 123 + T + F + L + L+++A L++ + ++ HTD +G+ Sbjct: 2 QAPQYVDETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSD 61 Query: 124 KNNLLISQERADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIF 183 K N +S+ RA V+ + L+ GV +R IS G T + + Sbjct: 62 KYNQALSERRAYVVANNLVSNGVPVSR-ISAVGLGESQAQMTQVCEAEVAKLGAKVSKAK 120 Query: 184 PR 185 R Sbjct: 121 KR 122 >3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* (B:) Length = 138 Score = 74.3 bits (182), Expect = 1e-14 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 78 VHVSFVSEVFLEKKFLPMLQLIATILNKFP-STVIAIQSHTDSI----GTLKNNLLISQE 132 + + + + ++ IA I+ K P I ++ TD K++ ++ Sbjct: 5 FTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAAN 64 Query: 133 RADVIKSYLIQRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPR 185 RA + LIQ GV+ N+ +S + PI ND+ R N R+EI Sbjct: 65 RAYRVMKVLIQYGVNPNQ-LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTD 116 >2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278) Length = 124 Score = 69.3 bits (169), Expect = 3e-13 Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 88 LEKKFLPMLQLIATILNKFPS-TVIAIQSHTDSIGTLKNNLLISQERADVIKSYLIQRGV 146 L K L IA + ++ + ++TDS + +S+ RA+ ++ Y G+ Sbjct: 19 LTKASKKRLSQIADYIRHNQDIDLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGL 78 Query: 147 SSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFP 184 +R I V+G+ + PI N + +G+ N+R+ I + Sbjct: 79 PEDR-IQVQGYGKRRPIADNGSPIGKDKNRRVVISLGR 115 >2wnm_A Gene 2, GP2; small protein inhibntor bacterial RNA polymerase, hydrolase; NMR {Enterobacteria phage T7} (A:) Length = 64 Score = 28.5 bits (63), Expect = 0.61 Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 12 MTTISGCGLASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRI 68 M+ ++ L+ KK +S++ + +LD+A + + Q G V+R+ Sbjct: 1 MSNVNTGSLSVDNKKFWATVESSEHSFEVPIYAETLDEALELAEWQYVPAGFEVTRV 57 >3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima} (A:1-74,A:165-343) Length = 253 Score = 27.0 bits (59), Expect = 1.8 Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 2/33 (6%) Query: 98 LIATILNKFPSTVIAIQSHTDSIGTLKNNLLIS 130 LI + + + +H DS + +S Sbjct: 56 LIVWKGSGEK--KVILDAHIDSGFVEVSGKYVS 86 >3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 2htv_A* 2htw_A* (A:1-95,A:265-385) Length = 216 Score = 26.7 bits (59), Expect = 1.8 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Query: 146 VSSNRFISVRGFAYKYPIDTNDTKVGR 172 ++RF SV+GF+++Y N +GR Sbjct: 87 PYNSRFESVKGFSFRY---DNGVWIGR 110 >1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} (A:) Length = 98 Score = 26.4 bits (58), Expect = 2.7 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%) Query: 20 LASREKKKVFLHKSNDTDIVNKRFGSSLDKAEDEFQMQLQDTGIVVSRI 68 +A V L K+ K FG + + E + + TGI + I Sbjct: 1 MAGELIHMVTLDKTG-----KKSFGICIVRGEVKDSPNTKTTGIFIKGI 44 >2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, hydrolase; 2.01A {Thermotoga maritima MSB8} (A:1-63,A:152-340) Length = 252 Score = 25.6 bits (55), Expect = 4.6 Identities = 9/33 (27%), Positives = 14/33 (42%) Query: 98 LIATILNKFPSTVIAIQSHTDSIGTLKNNLLIS 130 LIA + S + + +H DS KN + Sbjct: 43 LIALKRGRDSSKKLLVSAHXDSDYIEKNGRAVG 75 >1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:97-264) Length = 168 Score = 24.8 bits (54), Expect = 7.3 Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 117 TDSIGTLKNNLLISQERA 134 DSIG+ N+L +QE Sbjct: 35 VDSIGSWSQNILRTQESE 52 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.380 Gapped Lambda K H 0.267 0.0486 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,275,358 Number of extensions: 50873 Number of successful extensions: 152 Number of sequences better than 10.0: 1 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 23 Length of query: 190 Length of database: 4,956,049 Length adjustment: 84 Effective length of query: 106 Effective length of database: 2,116,429 Effective search space: 224341474 Effective search space used: 224341474 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.4 bits)