RPSBLAST alignment of GI: 254780953 and protein with PDBid: 3cyp

>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* Length = 138

 Score = 86.9 bits (215), Expect = 3e-18
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 88  LEKKFLPMLQLIATILNKFPSTV-IAIQSHTDSI----GTLKNNLLISQERADVIKSYLI 142
           + +  +  ++ IA I+ K P  V I ++  TD         K++  ++  RA  +   LI
Sbjct: 15  INQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLI 74

Query: 143 QRGVSSNRFISVRGFAYKYPIDTNDTKVGRQNNQRIEIQIFPRGN 187
           Q GV+ N+ +S   +    PI  ND+   R  N R+EI      N
Sbjct: 75  QYGVNPNQ-LSFSSYGSTNPIAPNDSLENRMKNNRVEIFFSTDAN 118