254780954

 Score =  312 bits (799), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 159/311 (51%), Positives = 221/311 (71%), Gaps = 11/311 (3%)

Query: 11  FLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIR 70
           FL SV+L+GAF++P FI WTDF+E  ERQA+L +GKKI V+G I++ ILPFP++ F+DI 
Sbjct: 27  FLLSVLLLGAFSIPFFISWTDFQEKIERQASLFIGKKIVVRG-IEVSILPFPAIVFRDIG 85

Query: 71  IDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLS-SKGV-------- 121
           IDQ+++GSFES+I+ +S+   F PLL GEIRV DM+ID+P++ FYL  +KG+        
Sbjct: 86  IDQRDNGSFESRIKKISINVHFFPLLFGEIRVCDMHIDRPYVTFYLPKNKGMFNVSKESN 145

Query: 122 -SNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             N     S M MIHN++LEK H+  GRI+IIDQESD+ YF+S LNL+ISA  L+I SPL
Sbjct: 146 KVNSSHENSIMAMIHNIVLEKSHIDEGRIQIIDQESDKSYFISGLNLEISANILDISSPL 205

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
           SI+SIKG +  EG G +++ +S+FKI A  PA+N +  LK+Q+  L Y I+ D  GN FW
Sbjct: 206 SINSIKGFIGVEGRGKYEDNKSSFKIMATLPAQNNSFPLKVQIASLDYSIVFDFNGNFFW 265

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD 300
           ++K PIY+GVFS  G  SKLL L++  + S++SG+F  SD ++RI  YKLQS    S  D
Sbjct: 266 DQKNPIYTGVFSAYGHISKLLPLKIPIEWSKVSGDFDFSDWHMRIEHYKLQSGSLRSLKD 325

Query: 301 EDNKTKVSQDE 311
           +D  ++  +D+
Sbjct: 326 KDQSSEQKRDK 336

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  186 bits (471), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 16/294 (5%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           M+ R L+ LG +  VVL  A   PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LP
Sbjct: 1   MVGRFLVFLGGVIVVVLFVALLAPLFIDWTDFRKNFEDQASRIIGKKVTVYGTVDARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R+ Q+ DG+   K+E  SM AE  P LSGE  +FDM +  P +   L   G
Sbjct: 61  FPSVTLHDVRVGQEADGTPIVKVEQFSMDAELAPFLSGEALIFDMRVVNPKVRLRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +         NV+LE +HV GG ++ ID +S +   ++ LN ++SA+        
Sbjct: 121 TLDWMRGSRAEIPAKNVVLENVHVNGGEVEFIDDQSGRSRRITGLNAEMSAK-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              S+ G    EG    D +  +F I+++ P +   + ++ +L P  +P+ IDL G L  
Sbjct: 173 ---SLAGPWRIEGNAALDGEHGSFLISSSQPDEKGVLRMRTKLSPDKHPVSIDLDGELKL 229

Query: 241 NEKQPIYSGVFSVA---GDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQ 291
            + +P Y G  S A   G+ +K  N +   +  R+ G F++++  +RI  Y+++
Sbjct: 230 VDSKPNYQGQLSAAIESGNSAKPANKK--EQPPRVKGRFELTNERIRIPEYRME 281

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 159/295 (53%), Gaps = 18/295 (6%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           M+ R L+ LG +  VVL  A   PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LP
Sbjct: 1   MVGRFLVFLGGVIVVVLFVALLAPLFIDWTDFRKNFEDQASRIIGKKVTVHGTVDARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R+ Q+ DG+   K+E  SM AE  P LSGE  +FDM +  P +   L   G
Sbjct: 61  FPSVTLHDVRVGQEADGTPIVKVEQFSMDAELAPFLSGEALIFDMRVVNPKVRLRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE +HV GG I  +D +S +   ++ LN ++SA+        
Sbjct: 121 TLDWMRGSRAEIPAKTVVLENVHVSGGEIDFLDDQSGRARRITGLNAEMSAK-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              S+ G    EG    D +   F I+++ P +   + ++ +L P  +P+ IDL G L  
Sbjct: 173 ---SLAGPWRVEGDAALDGEHGNFSISSSQPDEKGVLRMRTKLSPDKHPVSIDLDGELKL 229

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKS----RLSGNFKISDGNVRISRYKLQ 291
            +++P Y G  S A +     N   SA K+    RL G F++++  +RI  Y+++
Sbjct: 230 VDRKPNYQGQLSAAIESG---NSARSANKNEQPPRLKGRFELTNERIRIPEYRME 281

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 164/297 (55%), Gaps = 19/297 (6%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           ML R+L+ LG L ++VL  A  +P F+DWTDFR DFE QA+ I+GKK+ V G ++  +LP
Sbjct: 1   MLGRILVFLGGLLALVLFSALLIPYFVDWTDFRRDFEDQASRILGKKVVVHGRVEARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R     DGS   ++   SM AE  P LSGE R+FDM I++P     L   G
Sbjct: 61  FPSVTLHDVRAGTDADGSPLIQVARFSMDAELAPFLSGEARIFDMRIEEPKAKIRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE + ++GG+I+ ID++S +   ++ LN  +SA         
Sbjct: 121 TLDWMRGSRAEIPARTVVLESVQIEGGQIEFIDEQSGRNRVVTGLNADMSA--------- 171

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFP-AKNKAISLKIQLFPLAYPIIIDLFGNLF 239
             +S+ G   AEG    D    +F ++++ P   N  + L+++L P  +P+ +DL G + 
Sbjct: 172 --NSLAGPWKAEGRAAVDGHPGSFSLSSSEPDYANGRMGLRLRLVPDEHPVEVDLDGAIA 229

Query: 240 WNEKQPIYSGVFSVAGDFSKLLNLELSAKKS-----RLSGNFKISDGNVRISRYKLQ 291
               +P YSG FS +  F +    +  A +S     R  G+F++++ +VRI  Y+++
Sbjct: 230 ATAGKPAYSGSFSFS--FREDEKQKQQAGQSLFSSPRTRGSFELTNESVRIPSYRME 284

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  183 bits (464), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 164/297 (55%), Gaps = 19/297 (6%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           ML R+L+ LG L +VVL  A  +P F+DWTDFR DFE QA+ I+GKK+ V G ++  +LP
Sbjct: 1   MLGRILVFLGGLLAVVLFSALLIPYFVDWTDFRRDFEDQASRILGKKVVVHGRVEARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R     DGS   ++   SM AE  P LSGE R+FDM I++P     L   G
Sbjct: 61  FPSVTLHDVRAGTDADGSPLIQVARFSMDAELAPFLSGEARIFDMRIEEPKAKIRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE + ++GG+I+ ID++S +   ++ LN  +SA         
Sbjct: 121 TLDWMRGSRAEIPARTVVLESVQIEGGQIEFIDEQSGRNRVVTGLNADMSA--------- 171

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFP-AKNKAISLKIQLFPLAYPIIIDLFGNLF 239
             +S+ G   AEG    D    +F ++++ P   N  + L+I++ P  +P+ +DL G + 
Sbjct: 172 --NSLAGPWKAEGRAAVDGHPGSFSLSSSEPDYANGRMGLRIRVVPDEHPVEVDLDGAIA 229

Query: 240 WNEKQPIYSGVFSVAGDFSKLLNLELSAKKS-----RLSGNFKISDGNVRISRYKLQ 291
               +P YSG F+ +  F +    +  A +S     R  G+F++++ +VRI  Y+++
Sbjct: 230 ATAGKPAYSGSFAFS--FREDQKQKQQAGQSLFSSPRTRGSFELTNESVRIPSYRME 284

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 159/298 (53%), Gaps = 24/298 (8%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           M+ R L+ LG +  VVL  A   PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LP
Sbjct: 1   MVGRFLVFLGGVIVVVLFVALLAPLFIDWTDFRKNFEDQASRIIGKKVTVYGTVDARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R+ Q+ DG+   K+E  SM AE  P LSGE  +FDM I  P +   L   G
Sbjct: 61  FPSVTLHDVRVGQEADGTPIVKVEQFSMDAELAPFLSGEALIFDMRIVNPKVRLRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE +HV GG ++ ID +S +   ++ LN ++SA+        
Sbjct: 121 TLDWMRGSRAEIPARTVVLENVHVSGGEVEFIDDQSGRSRRITGLNAEMSAK-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              S+ G    EG    D +   F I+++ P +   + ++ +L P  +P+ +DL G L  
Sbjct: 173 ---SLAGPWRIEGDAALDGEHGGFSISSSQPDEKGVLRMRTRLSPDKHPVSVDLDGELKL 229

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKS-------RLSGNFKISDGNVRISRYKLQ 291
            + +P Y G  S A      + +  SAK +       R+ G F++++  +RI  Y+++
Sbjct: 230 VDSKPNYQGQLSAA------IEIRNSAKPANKKEQPPRVKGRFELTNERIRIPEYRME 281

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  182 bits (461), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 18/295 (6%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           M+ R L+ LG +  VVL  A   PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LP
Sbjct: 1   MVGRFLVFLGGVIVVVLFVALLAPLFIDWTDFRKNFEDQASRIIGKKVTVYGTVDARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R+ Q+ DG+   K+E  SM AE  P LSGE  +FDM +  P +   L   G
Sbjct: 61  FPSVTLHDVRVGQEADGTPIVKVEQFSMDAELAPFLSGEALIFDMRVVNPKVRLRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE +HV GG ++ ID +S +   ++ LN ++SA+        
Sbjct: 121 TLDWMRGSRAEIPARTVVLENVHVSGGEVEFIDDQSGRSRRITGLNAEMSAK-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              S+ G    EG    D +   F I+++ P +   + ++ +L P  +P+ +DL G L  
Sbjct: 173 ---SLAGPWRIEGDAALDGEHGGFSISSSQPDEKGVLRMRTRLSPDKHPVSVDLDGELKL 229

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKS----RLSGNFKISDGNVRISRYKLQ 291
            + +P Y G  S A    ++ N    A K     R+ G F++++  +RI  Y+++
Sbjct: 230 VDSKPNYQGQLSAA---VEIRNSAKPANKKEQPPRVKGRFELTNERIRIPEYRME 281

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 158/291 (54%), Gaps = 13/291 (4%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           ML R+L+ LG L  V L  A   PLFIDWT FR DFER+A+ I+GK + V G +   ++P
Sbjct: 1   MLARILVTLGGLLVVALFAALIAPLFIDWTSFRNDFEREASRIMGKPVVVHGSVDARLIP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FP+V   D+R+   + G    ++   SM AE  P LSGE  +FDM +D+P     L   G
Sbjct: 61  FPTVTLNDVRVGSSDGGPPLIQVAQFSMSAELAPFLSGEALIFDMRLDRPKARIRLQPDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +   T    H VILEK+ +  G I+ +D+++ +   +SDL+  +SAR        
Sbjct: 121 TLDWARGSRTAIPAHTVILEKVEIADGEIEFVDEQTGRTRRVSDLSADLSAR-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              ++ G   AEG    D +  +F  T+N   +  A+SL+ +L P   P  ++L G+L  
Sbjct: 173 ---TLAGPWRAEGRAALDGEVGSFSFTSNAVDETGALSLRARLVPDERPFGVELDGSLKV 229

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQ 291
            + +P+Y+G F++  +  +  N   +    R++G F++++ ++R+  Y  +
Sbjct: 230 VDFRPVYAGRFTLTEN--RPANEVKADGALRINGEFQLTNESIRVPEYHFE 278

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 159/295 (53%), Gaps = 18/295 (6%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           M+ R L+ LG +  V L  A   PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LP
Sbjct: 1   MVGRFLVFLGGVIVVALFVALLAPLFIDWTDFRKNFEDQASRIIGKKVTVHGTVDARLLP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSV   D+R+ Q+ DG+   ++E  SM AE  P LSGE  +FDM +  P +   L   G
Sbjct: 61  FPSVTLHDVRVGQEADGTPIVRVEQFSMDAELAPFLSGEALIFDMRVVNPKVRLRLLKDG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
             +W +          V+LE +HV GG ++ ID +S +   ++ LN ++SA+        
Sbjct: 121 TLDWMRGSRAEIPAKTVVLENVHVSGGEVEFIDDQSGRGRRITGLNAEMSAK-------- 172

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
              S+ G    EG    D +   F I+++ P +   + ++ +L P  +P+ IDL G L  
Sbjct: 173 ---SLAGPWRIEGDAALDGEHGNFSISSSQPDEKGVLHMRTKLSPDKHPVNIDLDGELKL 229

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKS----RLSGNFKISDGNVRISRYKLQ 291
            +++P Y G  S A +     N   SA K+    R+ G F++++  +RI  Y+++
Sbjct: 230 VDRKPNYQGQLSAAIEHR---NSAKSANKNEQPPRVKGRFELTNERIRIPEYRME 281

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/268 (33%), Positives = 149/268 (55%), Gaps = 11/268 (4%)

Query: 24  PLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFESKI 83
           PLFIDWTDFR++FE QA+ I+GKK+ V G +   +LPFPSV   D+R+ Q+ DG+   +I
Sbjct: 24  PLFIDWTDFRKNFEDQASRIIGKKVTVHGTVDARLLPFPSVTLHDVRVGQEADGTPLVQI 83

Query: 84  EGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIH 143
              SM AE  P LSGE  +FDM + +P +   L   G  +W +         +V+LE +H
Sbjct: 84  AQFSMDAELAPFLSGEALIFDMRVSEPKVRLRLLKDGTLDWMRGSQPEMPAKSVVLESVH 143

Query: 144 VKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSA 203
           V GG I+ ID++S +   ++  N ++SA+           S+ G    EG    D +  +
Sbjct: 144 VDGGDIQFIDEQSGRTRHITGFNAEMSAK-----------SLAGPWRIEGDAALDGEHGS 192

Query: 204 FKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFWNEKQPIYSGVFSVAGDFSKLLNL 263
           F I+++ P  +  + ++ +L P  +P+I+DL G L   +++P Y G+F+   +  +    
Sbjct: 193 FTISSSQPDDSGVLRVRTRLNPDRHPLIVDLDGELKLVDRKPDYLGLFTAGIEDKQARKA 252

Query: 264 ELSAKKSRLSGNFKISDGNVRISRYKLQ 291
                + R+ G F++++  +RI  Y+L+
Sbjct: 253 ADEQAQPRVKGRFELTNERIRIPEYRLE 280

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 62/326 (19%), Positives = 121/326 (37%), Gaps = 28/326 (8%)

Query: 2   LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPF 61
           +R+VL+ L  +  +V+     V    D  DF++   +Q +   G+ +A+ G +   + P+
Sbjct: 4   MRKVLVSLLGILILVIALLAAVLPLFDPNDFKDTIVQQVSAATGRPLAINGDLGWRLWPW 63

Query: 62  PSVFFKDIRI---DQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSS 118
           PSV  +DI +      E     ++  G S+    LPLLS ++++  + +D P +     +
Sbjct: 64  PSVILEDITLSNPGAAEPHLVSAERVGASLAL--LPLLSKQLQISQIRLDGPVIRLERLA 121

Query: 119 KGVSNW-----FQRKSTMDMIH-----NVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQ 168
           +G +NW      Q  +T          +  +  + V  GR+   D+ S+QV  L      
Sbjct: 122 EGRNNWDAPTAPQDPNTTPSSSSASAWSFDIGSLKVDDGRVIFQDKNSEQVLDLQIEIDP 181

Query: 169 ISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAY 228
             ++ L   +    D    ++  EGT    +     + TAN  A    + +      L  
Sbjct: 182 ELSKPLPFSARTGRDQRDITISGEGTKADASALGDVQGTANIEALAGKLKI-GDAAGLQG 240

Query: 229 PIIIDLFGNLFWNEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRY 288
                        +     S    +A +          A   RLS + +     + ++  
Sbjct: 241 ASG----EGSLQADPD---SSSTRLAANILN-----DPANDGRLSLSAQSLSLLLDLTWL 288

Query: 289 KLQSILPNSSTDEDNKTKVSQDEENL 314
           +L    P  +      + V+     L
Sbjct: 289 QLPLTPPALTDGLLLASLVTAGAAAL 314

Length = 648

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 26/225 (11%)

Query: 2   LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPF 61
           +++ L  L  +  V+L+    +    D   F+   +++ +   G+ + + G I   + P+
Sbjct: 1   MKKALKILLIILIVLLLLIIALIALFDPNYFKPTIQQKVSAASGRPLQIDGDIGRSLFPW 60

Query: 62  PSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGV 121
           P +  +++ +      +    +E + +    LPLL+ ++++  + +D   L     ++G 
Sbjct: 61  PHLSLENVTLGSPGGPATLVSVEQVDIWLSPLPLLTKQLQIDSILLDGASLALTRLTEGN 120

Query: 122 SNWFQRKSTMDM-IHNVI----------------LEKIHVKGGRIKIIDQESDQVYFLSD 164
            NW       D  + N                  +  I V  G +   D+ S +V    D
Sbjct: 121 PNWDDLLQLRDNALPNAPTQQPQPTWDRPAWSIDISAIQVSNGVVTWDDEASKKVLNDID 180

Query: 165 LNLQISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSAFKITAN 209
           L LQ+       +   S+           +G  D  +  +    N
Sbjct: 181 LQLQVDP-----LYGPSVPWRN----VLISGKGDQDQQGWGSLVN 216

The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis. Length = 537

Probab=100.00  E-value=0  Score=296.50  Aligned_cols=287  Identities=16%  Similarity=0.215  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             58899999999999999999885520858878999999999829819996214899736317999427982689987606
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES   81 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~   81 (380)
T Consensus         1 MKrll~~l~illvvvv~gl~aLv~lvdPNd~k~~I~~qV~~~TGr~L~i~GDi~ws~fP~Lgi~~g~vsLs~p~~~~p~~   80 (617)
T PRK10833          1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPLV   80 (617)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEECCEEEECCCCCCCCE
T ss_conf             94189999999999999999881504889979999999999779879987774699855214996766996999988802


Q ss_pred             EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC---------CCCCCCCCEEEEEEEEECCEEEEE
Q ss_conf             78679999870265249710113899644899998888880555555---------567665523653489728789998
Q gi|254780954|r   82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK---------STMDMIHNVILEKIHVKGGRIKII  152 (380)
Q Consensus        82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~---------~~~~~~~~~~l~~i~i~~g~i~~~  152 (380)
T Consensus        81 ~a~~~~l~V~l~PLLs~~l~V~~v~L~g~~i~L~~~~~g~~~~~~p~a~~~~~~~~~~~~~~~~l~I~~v~i~d~~l~~~  160 (617)
T PRK10833         81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPQSEAVRSEDAPVAPRDNTLPDVSDDRGWSFDISSLRVADSLLIWQ  160 (617)
T ss_pred             EEEEEEEEEEEHHHHCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEE
T ss_conf             80076784787144369518989998077899767654667888877887778898765777247762389966489998


Q ss_pred             ECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf             56888178762015662155455522233333455278999887647201356540543335620589873256660689
Q gi|254780954|r  153 DQESDQVYFLSDLNLQISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIII  232 (380)
Q Consensus       153 D~~~~~~~~i~~i~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  232 (380)
T Consensus       161 ~-~~~~q~~l~dinL~l~~~~~----------~~~~~~~s~~i~~dq~dl~~sl-------------~g~~d~~~~~~~l  216 (617)
T PRK10833        161 H-EDDEQVNVRDINLQMEQDAQ----------HQGSVEFSGRVNRDQRDLTLSL-------------NGTVDASDYPHQL  216 (617)
T ss_pred             C-CCCCEEEEEEEEEEECCCCC----------CCEEEEEEEECCCCCCCEEEEE-------------EEEEECCCCHHHH
T ss_conf             4-89847999844687035888----------5179999754047774527999-------------9887434473440


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf             98775430677604688999415674221235766750357888832451674123765046788602445899742888
Q gi|254780954|r  233 DLFGNLFWNEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTDEDNKTKVSQDEE  312 (380)
Q Consensus       233 ~~~g~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~l~g~l~~~~~~~~~~~~~~~~g~~~~~~~~~G~~~v~~~~~  312 (380)
T Consensus       217 ~a~--i--------~~l~~~l~G~~lP~~g~~---g~~~~~~~~~~~~~~l~L~~L~l~l----dd~~l~G~~~v~~~~~  279 (617)
T PRK10833        217 TAN--I--------EQLNYQLQGADLPAQGIS---GQGSLQAQWQESQKRLSLNQLNLTA----NDSQLSGSVQVTLGEK  279 (617)
T ss_pred             CCC--H--------HHCCCCCCCCCCCCCCCC---EEEEEEEEECCCCCEEEEECCEEEE----CCCEEEEEEEEECCCC
T ss_conf             064--5--------540420336868987741---3899998832376566864235754----5837886899862888


Q ss_pred             CCEEEEECCCCCEECCC
Q ss_conf             51789930442200147
Q gi|254780954|r  313 NLLNFSENGAESMHDLN  329 (380)
Q Consensus       313 ~~~~l~~~~~~~~~d~n  329 (380)
T Consensus       280 P~i~~~L~~d~LDLD~y  296 (617)
T PRK10833        280 PEWQLDLQSDKLNLDNL  296 (617)
T ss_pred             CEEEEEEECCCCCCCCC
T ss_conf             62899953583045445

Probab=100.00  E-value=1.1e-40  Score=259.97  Aligned_cols=170  Identities=18%  Similarity=0.316  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             58899999999999999999885520858878999999999829819996214899736317999427982689987606
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES   81 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~   81 (380)
T Consensus         1 Mk~~lk~l~~i~~~lv~~~~~l~~~~d~n~~k~~i~~~v~~~TGr~l~i~G~i~ls~fP~~~v~l~~vsl~n~~~~~~~~   80 (537)
T pfam05170         1 MKKALKILLIILIVLLLLIIALIALFDPNYFKPTIQQKVSAASGRPLQIDGDIGRSLFPWPHLSLENVTLGSPGGPATLV   80 (537)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCE
T ss_conf             94589999999999999999860752889979999999999889859994765689888874999002885899986526


Q ss_pred             EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCEEEEEEEE
Q ss_conf             786799998702652497101138996448999988888805555555-----------------676655236534897
Q gi|254780954|r   82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----------------TMDMIHNVILEKIHV  144 (380)
Q Consensus        82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----------------~~~~~~~~~l~~i~i  144 (380)
T Consensus        81 ~~~~~~~~v~l~pLL~g~v~i~~v~L~~~~i~L~r~~~G~~Nw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i  160 (537)
T pfam05170        81 SVEQVDIWLSPLPLLTKQLQIDSILLDGASLALTRLTEGNPNWDDLLQLRDNALPNAPTQQPQPTWDRPAWSIDISAIQV  160 (537)
T ss_pred             EEEEEEEEEEEHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             83489999876898589538959998476799886787766854335545544567654445655667566300375899


Q ss_pred             ECCEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             287899985688817876201566215
Q gi|254780954|r  145 KGGRIKIIDQESDQVYFLSDLNLQISA  171 (380)
Q Consensus       145 ~~g~i~~~D~~~~~~~~i~~i~l~l~~  171 (380)
T Consensus       161 ~~g~l~~~d~~~~~~~~~~~l~l~~~~  187 (537)
T pfam05170       161 SNGVVTWDDEASKKVLNDIDLQLQVDP  187 (537)
T ss_pred             ECCEEEEECCCCCEEEEEECCEEECCC
T ss_conf             778899734567616886131240363

The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.

Probab=100.00  E-value=3.1e-34  Score=221.48  Aligned_cols=156  Identities=23%  Similarity=0.414  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCC-E
Q ss_conf             588999999999999999998855208588789999999998298199962148997363179994279826899876-0
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSF-E   80 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~-~   80 (380)
T Consensus         4 ~~~~l~~~l~~~i~~ia~~~~~~~lf~pN~~k~~i~q~v~a~t~~~l~i~Gdi~w~~~P~~~v~l~d~tLs~~g~~~p~~   83 (648)
T COG2982           4 MRKVLVSLLGILILVIALLAAVLPLFDPNDFKDTIVQQVSAATGRPLAINGDLGWRLWPWPSVILEDITLSNPGAAEPHL   83 (648)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEECCCCEECCCCCCCCCE
T ss_conf             77889999999999999999986526822000899999999858964661676442277650250342634888888746


Q ss_pred             EEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC----------CCCCCCCCEEEEEEEEECCEEE
Q ss_conf             678679999870265249710113899644899998888880555555----------5676655236534897287899
Q gi|254780954|r   81 SKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK----------STMDMIHNVILEKIHVKGGRIK  150 (380)
Q Consensus        81 ~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~----------~~~~~~~~~~l~~i~i~~g~i~  150 (380)
T Consensus        84 v~~~~v~~sla~lpLl~~~l~i~~i~L~~p~i~L~r~~~g~~nw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~~g~v~  163 (648)
T COG2982          84 VSAERVGASLALLPLLSKQLQISQIRLDGPVIRLERLAEGRNNWDAPTAPQDPNTTPSSSSASAWSFDIGSLKVDDGRVI  163 (648)
T ss_pred             EEEEEEEEEEEEHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
T ss_conf             88540135532003331566401589727557647843443462345676566666666665456756585565166799


Q ss_pred             EEECCCC
Q ss_conf             9856888
Q gi|254780954|r  151 IIDQESD  157 (380)
Q Consensus       151 ~~D~~~~  157 (380)
T Consensus       164 ~~d~~~~  170 (648)
T COG2982         164 FQDKNSE  170 (648)
T ss_pred             EECCCCC
T ss_conf             9524433

Probab=99.81  E-value=8.6e-17  Score=117.67  Aligned_cols=169  Identities=18%  Similarity=0.215  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCC
Q ss_conf             95889999999999999999988552085--88789999999998298199962148997363-1799942798268998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDG   77 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~   77 (380)
T Consensus         2 ~L~~~~~~l~A~~lV~~AL~Vs~~r~lLP~~d~~R~~i~~~~~s~~G~~v~i-~~L~g~W~~~~P~L~l~~~~i~~~~~~   80 (1362)
T TIGR02099         2 RLRRIALSLLALILVVAALLVSLLRQLLPLVDEYRPQIEQKLSSALGIPVAI-GSLSGSWQRFGPTLELSGVRIAEPDKV   80 (1362)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEEEEECCEEEECCCEECCCCCC
T ss_conf             2488999999999999999999999862345544699999887751883577-531355440088788664175288885


Q ss_pred             CCEEEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCE
Q ss_conf             7606786799998702-65249710113899644899998888880555555567665--------52365348972878
Q gi|254780954|r   78 SFESKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMI--------HNVILEKIHVKGGR  148 (380)
Q Consensus        78 ~~~~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~--------~~~~l~~i~i~~g~  148 (380)
T Consensus        81 ~~~l~~~~v~~~~d~W~SLL~~~~~~~dl~~~Gl~l~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~Lrq~~~l~L~~s~  160 (1362)
T TIGR02099        81 AGELLVKRVEVALDLWQSLLHRQPRLADLRVDGLALTLRRDDDGGWEVGGNPLTSNQSLDDNLLLLLLRQLDRLSLRDSR  160 (1362)
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCE
T ss_conf             31013300589740011200455289998987535788554133230176046888887855158898428841230223


Q ss_pred             EEEEECCC-CCEEEEEEEEEEEC
Q ss_conf             99985688-81787620156621
Q gi|254780954|r  149 IKIIDQES-DQVYFLSDLNLQIS  170 (380)
Q Consensus       149 i~~~D~~~-~~~~~i~~i~l~l~  170 (380)
T Consensus       161 i~~~~~~~G~~~~~L~~~~L~w~  183 (1362)
T TIGR02099       161 ISLLTLRSGGDRLTLEIPQLRWL  183 (1362)
T ss_pred             EEECCCCCCCCCCCCCCHHCEEE
T ss_conf             13304113886564532000011

The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane..

Probab=99.54  E-value=7.5e-13  Score=94.19  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECC-CEEEEEEEEEEECCCCCCCE
Q ss_conf             89999999999999999988552085--8878999999999829819996214899736-31799942798268998760
Q gi|254780954|r    4 RVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILP-FPSVFFKDIRIDQKEDGSFE   80 (380)
Q Consensus         4 ~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P-~p~i~~~~v~i~~~~~~~~~   80 (380)
T Consensus         6 ril~~t~a~l~Vl~aL~Vs~lR~llP~v~~~r~qi~~~~~~~tg~pV~i-~~L~~sW~~fgP~l~aq~I~a~~~~g~~--   82 (1271)
T COG3164           6 RILLLTGAALLVLAALLVSLLRQLLPLVNRYRPQIEDKISSVTGIPVRI-AQLQGSWRNFGPTLEAQDIRAGDPDGGR--   82 (1271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-HHHCCEEECCCCCEEEEEEECCCCCCCE--
T ss_conf             8999998999999999999999988878777899999976531871787-0201513436661687300035876660--


Q ss_pred             EEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCC-CCCCCCCCC---EEEEEEEEECCEEEEEECC
Q ss_conf             6786799998702-6524971011389964489999888888055555-556766552---3653489728789998568
Q gi|254780954|r   81 SKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQR-KSTMDMIHN---VILEKIHVKGGRIKIIDQE  155 (380)
Q Consensus        81 ~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~-~~~~~~~~~---~~l~~i~i~~g~i~~~D~~  155 (380)
T Consensus        83 l~~~rV~la~d~wqSLl~~q~~f~dLt~-g~~L~lr~~~~g~~s~~g~~~~~~~~~~d~fLrQ~d~fdlrds~is~lt~s  161 (1271)
T COG3164          83 LSAARVTLALDVWQSLLHRQWQFRDLTF-GLQLTLRRDTTGAWSVNGGDGREDGRLSDLFLRQLDRFDLRDSALSFLTPS  161 (1271)
T ss_pred             EEEEEEEEHHHHHHHHHCCCEEEEEEEC-CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCEEEEECCC
T ss_conf             5566665469888666314445102211-227998617864200068987555741689986337434305547873688


Q ss_pred             CCCEEEEEEEEEEECCCCCC
Q ss_conf             88178762015662155455
Q gi|254780954|r  156 SDQVYFLSDLNLQISARFLN  175 (380)
Q Consensus       156 ~~~~~~i~~i~l~l~~~~~~  175 (380)
T Consensus       162 ~-~~a~L~~~~ltw~n~~~R  180 (1271)
T COG3164         162 G-PRAELAIPQLTWLNSPLR  180 (1271)
T ss_pred             C-CHHHHCCCCEEEECCCCC
T ss_conf             8-222213533144137754

Probab=97.65  E-value=0.00054  Score=41.48  Aligned_cols=148  Identities=9%  Similarity=-0.079  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCC---EEEEEEEEEEECCCCCC
Q ss_conf             588999999999999999998855208588789999999998298199962148997363---17999427982689987
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPF---PSVFFKDIRIDQKEDGS   78 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~---p~i~~~~v~i~~~~~~~   78 (380)
T Consensus         8 ~~~~~~~~~~~l~~ill~v~~l~~~~~t~~G~~~~~~~~~~~~~~~-~~-~~vsg~~~~gll~~~~~~~~~~v~~~~--G   83 (1278)
T COG2911           8 MRWLKKASAGLLAVILLLVLALGGLLGTTPGLRYGLNAIDSWLPGL-DI-EKVSGSLRGGLLLGDVRYDRLGVADRA--G   83 (1278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CE-EEEEECCCCCCEECCCCCCCEEEEECC--C
T ss_conf             4799999999999999999998603024722468999998657678-72-479833758821366000202688056--7


Q ss_pred             CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECC
Q ss_conf             60678679999870265249710113899644899998888880555555567665523653489728789998568
Q gi|254780954|r   79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQE  155 (380)
Q Consensus        79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~~~~~l~~i~i~~g~i~~~D~~  155 (380)
T Consensus        84 ~~~~~~~~~~~W~~~~l~~~~~~~~~isA~~--i~v~~~p~p~~~~s~~~~~~s~~lPi~l~~~~~~~~~i~i~~~~  158 (1278)
T COG2911          84 QLLLALDLRCLWSPSALFRLRLLADRISAGD--IAVLRPPTPDKEPSGPSSRISTPLPISLDLDALDVIRITIGKTT  158 (1278)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEECCEEEEECCCC
T ss_conf             2588515632467878766664210221130--01136899998888855567776676987031111157536531

Probab=99.26  E-value=7.9e-11  Score=82.16  Aligned_cols=108  Identities=12%  Similarity=0.237  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC-CCCEEEEEEEEEEEE
Q ss_conf             9999999998855208588789999999998298199962148997363179994279826899-876067867999987
Q gi|254780954|r   13 FSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED-GSFESKIEGLSMRAE   91 (380)
Q Consensus        13 lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~-~~~~~~~~~~~v~i~   91 (380)
T Consensus        10 f~~v~a~I~~~~~~f~d~l~K~~ie~~~~~~~gA~VeI-~~v~~~l~P~-~i~i~glqVtDp~~Pm~Nl~~~~~i~~~i~   87 (554)
T TIGR03545        10 FLIVVAVILALLYFFFDLLAKKAIVRGGEAAFGAKVEI-ASVDVGLFPL-QLSIQGLQVTDPDKPMRNLFEIDRIDASID   87 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEECCCCCC-EEEEECEEECCCCCCCCCEEEEEEEEEECC
T ss_conf             99999999999999988999999999888750864777-7554133564-378803374499850101016303468534


Q ss_pred             HHHHHCCCCCCCEEEEECCEEEEEECCCCCC
Q ss_conf             0265249710113899644899998888880
Q gi|254780954|r   92 FLPLLSGEIRVFDMYIDQPHLNFYLSSKGVS  122 (380)
Q Consensus        92 l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~  122 (380)
T Consensus        88 ~~~LL~~kviIe~~~i~gv~~~t~R~tsG~v  118 (554)
T TIGR03545        88 WDALLRGKVVIEEAAVEGLAFGTPRSTSGAV  118 (554)
T ss_pred             HHHHHHCEEEEEECEEEEEEECCCCCCCCCC
T ss_conf             6987422055030235213607856778766

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

Probab=95.76  E-value=0.11  Score=27.64  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCC
Q ss_conf             9588999999999999999998855208588789999999998--29819996214899736317999427982689987
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI--VGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGS   78 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~--~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~   78 (380)
T Consensus         1 M~k~~k~~~~~lll~~l~~~~l~~T~------~~wlp~va~~wLP~g~~l~l~~~p~~~~~---~l~lp~~~~~~--~~C   69 (876)
T PRK10695          1 MLKKYKAVIALLLLLILVPLTLLMTL------PLWLPTVAGIWLPAGTRIALDQSPRWTRG---GLRLPDLRYLV--GDC   69 (876)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCEEEECCCCCEECC---CEECCCEEEEE--CCC
T ss_conf             96045789999999999998888622------46667662633799858971689830258---55558748881--885


Q ss_pred             CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEE
Q ss_conf             6067867999987026524971011389964489
Q gi|254780954|r   79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHL  112 (380)
Q Consensus        79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i  112 (380)
T Consensus        70 ~la~~~~~~l~~--~--~~w~l~~~~l~lD~aCL   99 (876)
T PRK10695         70 TLAHIDNLSLSW--P--SRWQLSIGTLTLDSACL   99 (876)
T ss_pred             CEEECCCCEECC--C--CCEEEECCCCCCCHHHH
T ss_conf             258853518825--6--30078503032158999

Probab=94.88  E-value=0.22  Score=25.93  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf             588-9999999999999999988552085887899999999982981999621489973631799942798268998760
Q gi|254780954|r    2 LRR-VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFE   80 (380)
Q Consensus         2 mk~-ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~   80 (380)
T Consensus         1 Mk~~~~~~~l~~~~~l~~Li~~lPA~--------~v~~~~--~lp~~v~l~-gvsGTlW---~G~a~~v~~~---~----   59 (251)
T pfam01203         1 MKRKIVIGLLFVVAYLVFLLAHLPAR--------LVLSLA--PLPAGVSLS-GVSGTLW---QGRAKRVSWQ---N----   59 (251)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHH--------HHHHHC--CCCCCEEEE-CCCCCEE---ECEEEEEEEC---C----
T ss_conf             94453137899999999999985799--------998517--799853894-5455657---1347388998---6----


Q ss_pred             EEEEEEEEEEEHHHHHCCCCCCC
Q ss_conf             67867999987026524971011
Q gi|254780954|r   81 SKIEGLSMRAEFLPLLSGEIRVF  103 (380)
Q Consensus        81 ~~~~~~~v~i~l~~Ll~~~~~i~  103 (380)
T Consensus        60 ~~lg~V~W~l~p~~Ll~G~~~~~   82 (251)
T pfam01203        60 LPLGRVSWSLSPLSLLTGRLKLD   82 (251)
T ss_pred             EECCEEEEEEEHHHHHCCCEEEE
T ss_conf             83200799962899717875899

Probab=94.33  E-value=0.3  Score=25.13  Aligned_cols=99  Identities=21%  Similarity=0.271  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCCCC
Q ss_conf             889999999999999999988552085887899999999--98298199962148997363-179994279826899876
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQAT--LIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDGSF   79 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s--~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~~~   79 (380)
T Consensus        14 kr~~wl~i--~ivv~~g~ySaGWFylA~rle~~~~a~~a~l~a~Gv~~~c-~~l~~~GyPfRi~v~cd~v~~~d~~~G~-   89 (338)
T COG4093          14 KRLFWLVI--AIVVLIGAYSAGWFYLADRLEQQADAQAADLQARGVSGEC-ANLTFSGYPFRINVFCDKVRVDDPTEGW-   89 (338)
T ss_pred             CCHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECEEECCCCEEEEEEECCEEECCCCCCH-
T ss_conf             22348999--9999887750107667769999998764213103035525-1107505653898785124733786551-


Q ss_pred             EEEEEEEEEEEEHHHHHCCCCCCCEEEEECC
Q ss_conf             0678679999870265249710113899644
Q gi|254780954|r   80 ESKIEGLSMRAEFLPLLSGEIRVFDMYIDQP  110 (380)
Q Consensus        80 ~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p  110 (380)
T Consensus        90 aas~g~l~s~AqvY~p~~~-----V~~L~gp  115 (338)
T COG4093          90 AASAGQLRSAAQVYNPGHW-----VLELDGP  115 (338)
T ss_pred             HHCCCCCCCCCCCCCCCCE-----EEECCCC
T ss_conf             1105433454300157725-----7744786

Probab=97.39  E-value=0.0064  Score=35.09  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCEEEEEEEEECCEEEEEECCCC--CEEEEEEEEEEECCCC
Q ss_conf             52365348972878999856888--1787620156621554
Q gi|254780954|r  135 HNVILEKIHVKGGRIKIIDQESD--QVYFLSDLNLQISARF  173 (380)
Q Consensus       135 ~~~~l~~i~i~~g~i~~~D~~~~--~~~~i~~i~l~l~~~~  173 (380)
T Consensus         1 w~~~i~~~~l~~g~i~f~D~~~~~~~~~~l~~l~~~l~~ls   41 (150)
T pfam05359         1 WRVSIGNLALENGSVDFADRSLSPPFATTIDPLNLTLSNLS   41 (150)
T ss_pred             CEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEECC
T ss_conf             97999079998999999968999880799986089997512

Probab=96.78  E-value=0.031  Score=30.99  Aligned_cols=140  Identities=7%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC--------------------------------
Q ss_conf             588789999999998298199962148997363179994279826899--------------------------------
Q gi|254780954|r   29 WTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED--------------------------------   76 (380)
Q Consensus        29 ~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~--------------------------------   76 (380)
T Consensus        72 qE~la~~vg~~ltk~sg~~vvFesAiVP-~W~~g~I~F~nv~VSrrP~~~~~~~kgs~~~~~~~~~~~~~~~~~~~~~~~  150 (503)
T pfam08118        72 QEYVARKVGNFLTKNSALTVVFESAIVP-DWSSGKISFRKVFVSRRPKLSHKFTKGSQHEAYERAKLALSENLLVEDEDF  150 (503)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECCCC-CCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999998765301367857998304567-766665999777897077656564557617788866553302455454434


Q ss_pred             -C----CCEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----CCCCCCCEEEEEEEEEC
Q ss_conf             -8----7606786799998702652497101138996448999988888805555555-----67665523653489728
Q gi|254780954|r   77 -G----SFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----TMDMIHNVILEKIHVKG  146 (380)
Q Consensus        77 -~----~~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----~~~~~~~~~l~~i~i~~  146 (380)
T Consensus       151 dd~nytqFDltI~~vnvtLSf~KW~nGkGli~dvei~GvrGvVdr~---~v~w~~~~dp~~y~~~~~pgdfe~~~fkm~D  227 (503)
T pfam08118       151 DDGNYTQFDLTIDQVNISLSLNKWINGKGMIDEVEINGLRGVVDRT---HVHWKADDDARNYKNVHQPGDFEISNFKMND  227 (503)
T ss_pred             CCCCEEEEEEEEEEEEEEEEEHHHHCCCCEEEEEEEEEEEEEEECC---EECCCCCCCHHHHHCCCCCCCEEEEEEEEEE
T ss_conf             5787268998888999999906751687312678998416899732---2316888997897344589977864589998


Q ss_pred             CEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf             78999856888178762015662155
Q gi|254780954|r  147 GRIKIIDQESDQVYFLSDLNLQISAR  172 (380)
Q Consensus       147 g~i~~~D~~~~~~~~i~~i~l~l~~~  172 (380)
T Consensus       228 ~lvtvyqp~~frPf~vSIf~cdLPqL  253 (503)
T pfam08118       228 VLFTLYQPGGFRPFQVSIFNCELPQL  253 (503)
T ss_pred             EEEEEECCCCCCCEEEEEEECCCHHH
T ss_conf             89998738887620588640556454

Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA.

Probab=92.98  E-value=0.29  Score=25.28  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH----------HHHCCHHHHH---HHHHHHHHHHHCCEEEEE
Q ss_conf             95889999999999999999988----------5520858878---999999999829819996
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTV----------PLFIDWTDFR---EDFERQATLIVGKKIAVK   51 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~----------~~~~d~~~~k---~~i~~~~s~~~g~~v~i~   51 (380)
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~   64 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLF   64 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9088999999999997432243048836899980699999999999999999999878978999

Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.