Query         gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 380
No_of_seqs    168 out of 631
Neff          9.3 
Searched_HMMs 39220
Date          Mon May 30 02:38:07 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK10833 putative assembly pro 100.0       0       0  296.5  32.3  287    2-329     1-296 (617)
  2 pfam05170 AsmA AsmA family. Th 100.0 1.1E-40 2.8E-45  260.0  27.9  170    2-171     1-187 (537)
  3 COG2982 AsmA Uncharacterized p 100.0 3.1E-34 7.9E-39  221.5  17.8  156    2-157     4-170 (648)
  4 TIGR02099 TIGR02099 conserved   99.8 8.6E-17 2.2E-21  117.7  23.7  169    1-170     2-183 (1362)
  5 COG3164 Predicted membrane pro  99.5 7.5E-13 1.9E-17   94.2  15.6  167    4-175     6-180 (1271)
  6 TIGR03545 conserved hypothetic  99.3 7.9E-11   2E-15   82.2  10.7  108   13-122    10-118 (554)
  7 COG2911 Uncharacterized protei  97.6 0.00054 1.4E-08   41.5   9.1  148    2-155     8-158 (1278)
  8 pfam05359 DUF748 Domain of Unk  97.4  0.0064 1.6E-07   35.1  11.8   39  135-173     1-41  (150)
  9 pfam08118 MDM31_MDM32 Yeast mi  96.8   0.031   8E-07   31.0  11.1  140   29-172    72-253 (503)
 10 PRK10695 hypothetical protein;  95.8    0.11 2.9E-06   27.6  13.7   97    1-112     1-99  (876)
 11 pfam01203 GSPII_N Bacterial ty  94.9    0.22 5.7E-06   25.9  11.1   81    2-103     1-82  (251)
 12 COG4093 Uncharacterized protei  94.3     0.3 7.7E-06   25.1  15.2   99    3-110    14-115 (338)
 13 TIGR03431 PhnD phosphonate ABC  93.0    0.29 7.3E-06   25.3   5.5   51    1-51      1-64  (288)
 14 PRK10834 hypothetical protein;  83.1     1.8 4.7E-05   20.5   3.9   29    1-29      1-29  (239)
 15 PRK11715 hypothetical protein;  82.1     2.9 7.5E-05   19.3   6.7   53    4-56      9-61  (427)
 16 PHA00019 phage assembly protei  81.2     2.4 6.2E-05   19.7   4.0   53    1-55      1-55  (428)
 17 KOG3448 consensus               80.5     1.2 3.2E-05   21.5   2.3   62   29-91      4-65  (96)
 18 pfam07273 DUF1439 Protein of u  79.9     3.5 8.9E-05   18.8   8.9   61    2-73      1-64  (177)
 19 PRK13150 cytochrome c-type bio  79.6     2.3 5.8E-05   19.9   3.4   52    3-54      7-66  (159)
 20 PRK10598 hypothetical protein;  79.3     3.6 9.3E-05   18.7   6.7   65    2-74      1-66  (186)
 21 pfam06123 CreD Inner membrane   79.0     3.7 9.5E-05   18.7   6.7   55    2-56      4-58  (430)
 22 PRK13861 type IV secretion sys  78.5     2.1 5.3E-05   20.1   2.9   17    1-17      1-17  (293)
 23 PRK13165 cytochrome c-type bio  77.7     2.8 7.2E-05   19.4   3.4   96    3-109     7-117 (161)
 24 PRK10270 hypothetical protein;  75.0     3.5   9E-05   18.8   3.3   22    2-23      1-22  (340)
 25 PRK00315 potassium-transportin  75.0     4.5 0.00011   18.2   3.8   47    1-53      1-49  (195)
 26 PRK11622 putative ABC transpor  73.7     4.4 0.00011   18.2   3.5   49    1-49      1-71  (401)
 27 TIGR02112 cyd_oper_ybgE cyd op  72.2     5.6 0.00014   17.6   3.8   33    1-37      8-40  (93)
 28 PRK08262 hypothetical protein;  70.8       6 0.00015   17.4   3.7   51    1-51      3-60  (489)
 29 PRK06770 hypothetical protein;  68.7     6.2 0.00016   17.3   3.4   21    2-22      1-21  (185)
 30 PRK12696 flgH flagellar basal   67.4     3.1 7.9E-05   19.1   1.6   19    1-19      1-19  (238)
 31 COG5009 MrcA Membrane carboxyp  66.3     7.5 0.00019   16.8   3.7   17   31-47    264-280 (797)
 32 COG2156 KdpC K+-transporting A  66.2     7.6 0.00019   16.8   3.6   46    1-52      1-49  (190)
 33 COG5294 Uncharacterized protei  65.7     3.3 8.5E-05   18.9   1.5   20    2-21      1-20  (113)
 34 pfam03100 CcmE CcmE. CcmE is t  65.0     7.4 0.00019   16.9   3.1   48    3-55      6-60  (130)
 35 PRK11627 hypothetical protein;  64.8     5.2 0.00013   17.8   2.3   19    1-19      1-19  (192)
 36 PRK09379 membrane-bound transc  63.7     8.2 0.00021   16.6   3.2   25    1-25      1-25  (303)
 37 PRK10604 sensor protein RstB;   63.4     8.6 0.00022   16.5   5.4   22    2-23      1-22  (433)
 38 PRK02515 psbU photosystem II c  63.3     8.6 0.00022   16.5   4.4   50    2-51      1-68  (144)
 39 TIGR00247 TIGR00247 conserved   61.7     9.2 0.00024   16.3   3.8   26    2-27      7-36  (373)
 40 COG2832 Uncharacterized protei  61.3     6.5 0.00017   17.2   2.3   26    1-26      1-26  (119)
 41 PRK13254 cytochrome c-type bio  60.5     8.5 0.00022   16.5   2.8   47    3-54      7-60  (149)
 42 PRK09501 potD spermidine/putre  59.6      10 0.00026   16.1   4.3   50    2-51      1-57  (348)
 43 pfam03699 UPF0182 Uncharacteri  59.5      10 0.00026   16.1   3.6   61    3-68    270-342 (771)
 44 COG4509 Uncharacterized protei  58.1      11 0.00027   15.9   4.6   33    1-33      2-37  (244)
 45 PRK00068 hypothetical protein;  56.0      12 0.00029   15.7   3.9   42    5-46    284-336 (978)
 46 PRK11029 FtsH protease regulat  55.9       2 5.1E-05   20.2  -1.1   82    2-92      1-91  (334)
 47 COG5353 Uncharacterized protei  55.7     7.4 0.00019   16.9   1.8   47    1-47      1-52  (161)
 48 PRK05696 fliL flagellar basal   54.4     9.3 0.00024   16.3   2.2   24    3-26     16-39  (168)
 49 pfam07423 DUF1510 Protein of u  53.1      12 0.00032   15.5   2.6   29    5-33     14-42  (214)
 50 PRK13428 F0F1 ATP synthase sub  52.9      13 0.00033   15.4   4.4   42   30-71    387-428 (445)
 51 PRK07021 fliL flagellar basal   52.8      10 0.00025   16.1   2.1   24    3-26     12-35  (159)
 52 PRK10549 signal transduction h  51.1      14 0.00035   15.2   5.6   40    2-41      9-48  (467)
 53 pfam02158 Neuregulin Neureguli  51.0      12  0.0003   15.7   2.2   43    2-44      6-49  (406)
 54 PRK07018 flgA flagellar basal   50.6      14 0.00036   15.2   6.2  108    2-116     5-118 (236)
 55 PRK04792 tolB translocation pr  48.8      14 0.00035   15.3   2.3   16   85-100   112-127 (450)
 56 COG0687 PotD Spermidine/putres  48.1      16  0.0004   15.0   4.3   51    1-51      1-62  (363)
 57 PRK13159 cytochrome c-type bio  47.2      16 0.00041   14.9   3.3   47    3-54      7-60  (156)
 58 PRK07718 fliL flagellar basal   47.1      16 0.00041   14.9   2.7   22    1-22      1-22  (142)
 59 COG4640 Predicted membrane pro  46.6      16 0.00042   14.8   4.2   37    6-42     55-91  (465)
 60 PRK02693 apocytochrome f; Revi  44.4      17 0.00042   14.8   2.2   50    1-51      1-51  (312)
 61 PRK13430 F0F1 ATP synthase sub  43.9      18 0.00046   14.6   4.8   42   30-71    213-254 (271)
 62 PRK00888 ftsB cell division pr  43.4      18 0.00047   14.5   4.3   16    2-17      1-16  (105)
 63 pfam05540 Serpulina_VSP Serpul  42.5     9.3 0.00024   16.3   0.6   36    2-37      1-44  (377)
 64 COG1704 LemA Uncharacterized c  42.0      19 0.00049   14.4   4.4   26    2-27      1-26  (185)
 65 PRK11633 hypothetical protein;  41.3      20 0.00051   14.3   3.5   23    8-30      8-30  (218)
 66 PRK03757 hypothetical protein;  41.2     8.8 0.00022   16.4   0.3   29    2-30      1-30  (191)
 67 pfam04076 BOF Bacterial OB fol  40.8      20 0.00052   14.3   3.2   14    2-15      1-14  (126)
 68 COG3790 Predicted membrane pro  40.7      20 0.00052   14.3   3.3   32    1-36     12-43  (97)
 69 pfam11947 DUF3464 Protein of u  38.6      16 0.00042   14.8   1.4   28    1-28     57-84  (149)
 70 PRK11677 cytochrome d ubiquino  37.9      22 0.00057   14.0   5.3   39    2-42      1-40  (134)
 71 COG1580 FliL Flagellar basal b  37.8      20  0.0005   14.4   1.7   22    2-23     14-35  (159)
 72 TIGR03142 cytochro_ccmI cytoch  37.6      23 0.00058   14.0   2.7   22    5-26      1-22  (117)
 73 PRK10002 outer membrane protei  37.3      13 0.00034   15.3   0.8   43    1-58      1-43  (362)
 74 cd01725 LSm2 The eukaryotic Sm  36.9      19 0.00048   14.5   1.5   49   41-89      7-62  (81)
 75 COG2949 SanA Uncharacterized m  36.8      23  0.0006   13.9   3.3   28    1-28     13-40  (235)
 76 pfam09889 DUF2116 Uncharacteri  36.6      24  0.0006   13.9   3.5   25    2-26     35-59  (59)
 77 TIGR00304 TIGR00304 conserved   35.3      25 0.00063   13.7   2.8   61    1-63      1-68  (93)
 78 PRK12438 hypothetical protein;  34.9      25 0.00064   13.7   3.3   27   20-46    301-338 (979)
 79 pfam02669 KdpC K+-transporting  34.4      26 0.00065   13.7   3.4   47    2-54      1-49  (188)
 80 pfam04415 DUF515 Protein of un  33.9      26 0.00066   13.6   5.0   31    3-33     30-60  (416)
 81 PRK12789 flgI flagellar basal   33.7      26 0.00067   13.6   2.4   15    1-15      1-15  (367)
 82 COG3111 Periplasmic protein wi  33.6      26 0.00067   13.6   3.1   10    2-11      1-10  (128)
 83 PRK10588 hypothetical protein;  33.6      26 0.00067   13.6   3.4   32    1-36     12-43  (97)
 84 COG3221 PhnD ABC-type phosphat  33.4      27 0.00068   13.6   5.0   50    1-50      1-71  (299)
 85 PRK10682 putrescine transporte  32.7      27  0.0007   13.5   4.4   50    2-51      5-60  (370)
 86 PRK01742 tolB translocation pr  32.0      28 0.00071   13.4   2.7   19    1-19      3-21  (430)
 87 PRK01741 cell division protein  31.5      29 0.00073   13.4   1.9   16    2-17      3-18  (342)
 88 COG4086 Predicted secreted pro  30.8      29 0.00075   13.3   2.9   42    2-52      1-42  (299)
 89 TIGR01655 yxeA_fam conserved h  30.1      30 0.00077   13.2   2.9   19    2-20      1-19  (121)
 90 PRK10527 hypothetical protein;  30.0      30 0.00077   13.2   3.0   24    2-25      1-25  (125)
 91 PRK08455 fliL flagellar basal   29.8      15 0.00038   15.0   0.0   17    7-23     22-38  (180)
 92 TIGR00859 ENaC sodium channel   28.8      32 0.00081   13.1   5.9   51    2-68     30-83  (632)
 93 PRK03598 hypothetical protein;  28.2      33 0.00083   13.0   6.6   44   45-88     30-79  (331)
 94 PRK04335 cell division protein  27.8      33 0.00085   13.0   2.6   16    2-17      4-19  (319)
 95 PRK05089 cytochrome C oxidase   27.6      33 0.00085   13.0   4.1   34    3-47     10-44  (186)
 96 COG3322 Predicted periplasmic   27.5      34 0.00086   13.0   4.3   29    1-29      8-36  (295)
 97 PRK10559 p-hydroxybenzoic acid  27.4      34 0.00086   13.0   6.7   78    1-89      4-84  (310)
 98 COG2332 CcmE Cytochrome c-type  26.8      35 0.00088   12.9   3.2  102    3-113     7-115 (153)
 99 PRK10287 thiosulfate:cyanide s  26.2      35  0.0009   12.8   1.7   20    1-20      1-20  (104)
100 pfam11309 DUF3112 Protein of u  25.9      36 0.00092   12.8   5.6   39    2-40     13-52  (160)
101 PRK00523 hypothetical protein;  25.8      36 0.00092   12.8   4.5   32    5-42      5-36  (73)
102 pfam03866 HAP Hydrophobic abun  25.7      36 0.00093   12.8   2.5   17    1-17      1-17  (167)
103 pfam07234 DUF1426 Protein of u  25.5      37 0.00093   12.7   4.6   35    6-40     15-49  (117)
104 PRK01844 hypothetical protein;  24.5      38 0.00097   12.6   4.8   20   19-42     16-35  (72)
105 PRK03002 prsA peptidylprolyl i  24.5      38 0.00098   12.6   2.8   21    1-21      1-21  (285)
106 PRK12785 fliL flagellar basal   24.1      15 0.00038   15.1  -0.8   20    7-26     27-46  (167)
107 COG1930 CbiN ABC-type cobalt t  22.6      42  0.0011   12.4   3.3   41    1-43      1-45  (97)
108 pfam06649 DUF1161 Protein of u  22.5      42  0.0011   12.4   3.2   38    2-43      1-38  (75)
109 pfam05842 Euplotes_phero Euplo  22.4      42  0.0011   12.4   1.5   17    2-18      1-17  (153)
110 TIGR01060 eno phosphopyruvate   22.3      42  0.0011   12.4   2.7   36  110-148    16-52  (430)
111 COG3763 Uncharacterized protei  22.0      43  0.0011   12.3   4.7   26   13-42     10-35  (71)
112 PRK13697 cytochrome c6; Provis  21.8      43  0.0011   12.3   3.6   18    2-19      1-18  (111)
113 PRK02889 tolB translocation pr  21.6      44  0.0011   12.3   1.8   19    1-19      3-21  (430)
114 pfam09911 DUF2140 Uncharacteri  21.2      19 0.00048   14.4  -0.8   27  325-351   154-180 (187)
115 COG3745 CpaB Flp pilus assembl  20.9      45  0.0012   12.2   1.7   16   86-101    93-108 (276)
116 PRK02710 plastocyanin; Provisi  20.6      46  0.0012   12.2   2.8   54    1-69      1-56  (119)
117 PRK12450 foldase protein PrsA;  20.5      46  0.0012   12.1   2.9   21    1-21      3-23  (309)
118 COG4814 Uncharacterized protei  20.3      20  0.0005   14.4  -0.9   25    2-26      1-25  (288)
119 PRK10386 curli assembly protei  20.3      47  0.0012   12.1   5.1   71    2-72      1-85  (131)
120 pfam00820 Lipoprotein_1 Borrel  20.2      41   0.001   12.5   0.8   18    2-19      1-18  (273)

No 1  
>PRK10833 putative assembly protein; Provisional
Probab=100.00  E-value=0  Score=296.50  Aligned_cols=287  Identities=16%  Similarity=0.215  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             58899999999999999999885520858878999999999829819996214899736317999427982689987606
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES   81 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~   81 (380)
                      |||+++++++++++++++++++++|||||+||++|++||+++|||+++|+||++|+|||+++|.++++++.+|.+.+||+
T Consensus         1 MKrll~~l~illvvvv~gl~aLv~lvdPNd~k~~I~~qV~~~TGr~L~i~GDi~ws~fP~Lgi~~g~vsLs~p~~~~p~~   80 (617)
T PRK10833          1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPLV   80 (617)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEECCEEEECCCCCCCCE
T ss_conf             94189999999999999999881504889979999999999779879987774699855214996766996999988802


Q ss_pred             EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC---------CCCCCCCCEEEEEEEEECCEEEEE
Q ss_conf             78679999870265249710113899644899998888880555555---------567665523653489728789998
Q gi|254780954|r   82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK---------STMDMIHNVILEKIHVKGGRIKII  152 (380)
Q Consensus        82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~---------~~~~~~~~~~l~~i~i~~g~i~~~  152 (380)
                      +++++++++++||||+|+++|.+|+|++|.++|.++++|+.+|..+.         .+...+|.++|++++|+|+.+.|.
T Consensus        81 ~a~~~~l~V~l~PLLs~~l~V~~v~L~g~~i~L~~~~~g~~~~~~p~a~~~~~~~~~~~~~~~~l~I~~v~i~d~~l~~~  160 (617)
T PRK10833         81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPQSEAVRSEDAPVAPRDNTLPDVSDDRGWSFDISSLRVADSLLIWQ  160 (617)
T ss_pred             EEEEEEEEEEEHHHHCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEE
T ss_conf             80076784787144369518989998077899767654667888877887778898765777247762389966489998


Q ss_pred             ECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEE
Q ss_conf             56888178762015662155455522233333455278999887647201356540543335620589873256660689
Q gi|254780954|r  153 DQESDQVYFLSDLNLQISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIII  232 (380)
Q Consensus       153 D~~~~~~~~i~~i~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l  232 (380)
                      + ..++.++++++|+.+.....          ...+++++++.+.++....+++             ....+...++..+
T Consensus       161 ~-~~~~q~~l~dinL~l~~~~~----------~~~~~~~s~~i~~dq~dl~~sl-------------~g~~d~~~~~~~l  216 (617)
T PRK10833        161 H-EDDEQVNVRDINLQMEQDAQ----------HQGSVEFSGRVNRDQRDLTLSL-------------NGTVDASDYPHQL  216 (617)
T ss_pred             C-CCCCEEEEEEEEEEECCCCC----------CCEEEEEEEECCCCCCCEEEEE-------------EEEEECCCCHHHH
T ss_conf             4-89847999844687035888----------5179999754047774527999-------------9887434473440


Q ss_pred             EEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf             98775430677604688999415674221235766750357888832451674123765046788602445899742888
Q gi|254780954|r  233 DLFGNLFWNEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTDEDNKTKVSQDEE  312 (380)
Q Consensus       233 ~~~g~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~l~g~l~~~~~~~~~~~~~~~~g~~~~~~~~~G~~~v~~~~~  312 (380)
                      ..+  .        .+..+.+.+..++.....   ....+...++....++.+.++.+..    +...++|++.+.++..
T Consensus       217 ~a~--i--------~~l~~~l~G~~lP~~g~~---g~~~~~~~~~~~~~~l~L~~L~l~l----dd~~l~G~~~v~~~~~  279 (617)
T PRK10833        217 TAN--I--------EQLNYQLQGADLPAQGIS---GQGSLQAQWQESQKRLSLNQLNLTA----NDSQLSGSVQVTLGEK  279 (617)
T ss_pred             CCC--H--------HHCCCCCCCCCCCCCCCC---EEEEEEEEECCCCCEEEEECCEEEE----CCCEEEEEEEEECCCC
T ss_conf             064--5--------540420336868987741---3899998832376566864235754----5837886899862888


Q ss_pred             CCEEEEECCCCCEECCC
Q ss_conf             51789930442200147
Q gi|254780954|r  313 NLLNFSENGAESMHDLN  329 (380)
Q Consensus       313 ~~~~l~~~~~~~~~d~n  329 (380)
                      |.+++++++..+|+|.-
T Consensus       280 P~i~~~L~~d~LDLD~y  296 (617)
T PRK10833        280 PEWQLDLQSDKLNLDNL  296 (617)
T ss_pred             CEEEEEEECCCCCCCCC
T ss_conf             62899953583045445


No 2  
>pfam05170 AsmA AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Probab=100.00  E-value=1.1e-40  Score=259.97  Aligned_cols=170  Identities=18%  Similarity=0.316  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             58899999999999999999885520858878999999999829819996214899736317999427982689987606
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES   81 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~   81 (380)
                      |||++++++++++++++++++++++||||+||++|+++++++|||+|+|+|+++|+|||+|+|++++|++++|++.+||+
T Consensus         1 Mk~~lk~l~~i~~~lv~~~~~l~~~~d~n~~k~~i~~~v~~~TGr~l~i~G~i~ls~fP~~~v~l~~vsl~n~~~~~~~~   80 (537)
T pfam05170         1 MKKALKILLIILIVLLLLIIALIALFDPNYFKPTIQQKVSAASGRPLQIDGDIGRSLFPWPHLSLENVTLGSPGGPATLV   80 (537)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCE
T ss_conf             94589999999999999999860752889979999999999889859994765689888874999002885899986526


Q ss_pred             EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCEEEEEEEE
Q ss_conf             786799998702652497101138996448999988888805555555-----------------676655236534897
Q gi|254780954|r   82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----------------TMDMIHNVILEKIHV  144 (380)
Q Consensus        82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----------------~~~~~~~~~l~~i~i  144 (380)
                      +++++++++++||||+|+++|++|+|++|+++|+++++|+.||.+..+                 .....+.+.++++.|
T Consensus        81 ~~~~~~~~v~l~pLL~g~v~i~~v~L~~~~i~L~r~~~G~~Nw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i  160 (537)
T pfam05170        81 SVEQVDIWLSPLPLLTKQLQIDSILLDGASLALTRLTEGNPNWDDLLQLRDNALPNAPTQQPQPTWDRPAWSIDISAIQV  160 (537)
T ss_pred             EEEEEEEEEEEHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             83489999876898589538959998476799886787766854335545544567654445655667566300375899


Q ss_pred             ECCEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             287899985688817876201566215
Q gi|254780954|r  145 KGGRIKIIDQESDQVYFLSDLNLQISA  171 (380)
Q Consensus       145 ~~g~i~~~D~~~~~~~~i~~i~l~l~~  171 (380)
                      ++|++.|.|...+......++++....
T Consensus       161 ~~g~l~~~d~~~~~~~~~~~l~l~~~~  187 (537)
T pfam05170       161 SNGVVTWDDEASKKVLNDIDLQLQVDP  187 (537)
T ss_pred             ECCEEEEECCCCCEEEEEECCEEECCC
T ss_conf             778899734567616886131240363


No 3  
>COG2982 AsmA Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00  E-value=3.1e-34  Score=221.48  Aligned_cols=156  Identities=23%  Similarity=0.414  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCC-E
Q ss_conf             588999999999999999998855208588789999999998298199962148997363179994279826899876-0
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSF-E   80 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~-~   80 (380)
                      |+|++.++.+++|+++++.+++..+|+||+||+++.+++++++||+++|+||+.|++||+|++.+++++|+++....| +
T Consensus         4 ~~~~l~~~l~~~i~~ia~~~~~~~lf~pN~~k~~i~q~v~a~t~~~l~i~Gdi~w~~~P~~~v~l~d~tLs~~g~~~p~~   83 (648)
T COG2982           4 MRKVLVSLLGILILVIALLAAVLPLFDPNDFKDTIVQQVSAATGRPLAINGDLGWRLWPWPSVILEDITLSNPGAAEPHL   83 (648)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEECCCCEECCCCCCCCCE
T ss_conf             77889999999999999999986526822000899999999858964661676442277650250342634888888746


Q ss_pred             EEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC----------CCCCCCCCEEEEEEEEECCEEE
Q ss_conf             678679999870265249710113899644899998888880555555----------5676655236534897287899
Q gi|254780954|r   81 SKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK----------STMDMIHNVILEKIHVKGGRIK  150 (380)
Q Consensus        81 ~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~----------~~~~~~~~~~l~~i~i~~g~i~  150 (380)
                      ++++++++++++||||+++++|++++|++|.++|++..+|++||++..          ..+...|.+.++++.+.+|.+.
T Consensus        84 v~~~~v~~sla~lpLl~~~l~i~~i~L~~p~i~L~r~~~g~~nw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~~g~v~  163 (648)
T COG2982          84 VSAERVGASLALLPLLSKQLQISQIRLDGPVIRLERLAEGRNNWDAPTAPQDPNTTPSSSSASAWSFDIGSLKVDDGRVI  163 (648)
T ss_pred             EEEEEEEEEEEEHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE
T ss_conf             88540135532003331566401589727557647843443462345676566666666665456756585565166799


Q ss_pred             EEECCCC
Q ss_conf             9856888
Q gi|254780954|r  151 IIDQESD  157 (380)
Q Consensus       151 ~~D~~~~  157 (380)
                      |.|....
T Consensus       164 ~~d~~~~  170 (648)
T COG2982         164 FQDKNSE  170 (648)
T ss_pred             EECCCCC
T ss_conf             9524433


No 4  
>TIGR02099 TIGR02099 conserved hypothetical protein TIGR02099; InterPro: IPR011836    This entry describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane..
Probab=99.81  E-value=8.6e-17  Score=117.67  Aligned_cols=169  Identities=18%  Similarity=0.215  Sum_probs=134.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCC
Q ss_conf             95889999999999999999988552085--88789999999998298199962148997363-1799942798268998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDG   77 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~   77 (380)
                      .++|+++.++.++++++++++.+.+.+-|  |.||++|++++++.+|.+|.| |.++-+|--+ |.+.+++|.|..++.-
T Consensus         2 ~L~~~~~~l~A~~lV~~AL~Vs~~r~lLP~~d~~R~~i~~~~~s~~G~~v~i-~~L~g~W~~~~P~L~l~~~~i~~~~~~   80 (1362)
T TIGR02099         2 RLRRIALSLLALILVVAALLVSLLRQLLPLVDEYRPQIEQKLSSALGIPVAI-GSLSGSWQRFGPTLELSGVRIAEPDKV   80 (1362)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEEEEECCEEEECCCEECCCCCC
T ss_conf             2488999999999999999999999862345544699999887751883577-531355440088788664175288885


Q ss_pred             CCEEEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCE
Q ss_conf             7606786799998702-65249710113899644899998888880555555567665--------52365348972878
Q gi|254780954|r   78 SFESKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMI--------HNVILEKIHVKGGR  148 (380)
Q Consensus        78 ~~~~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~--------~~~~l~~i~i~~g~  148 (380)
                      ..-+.++++++.+.+| +||..+++|.+++++|+++.|.++.+|.++--..+..+.+.        .--.+++|.|.|++
T Consensus        81 ~~~l~~~~v~~~~d~W~SLL~~~~~~~dl~~~Gl~l~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~Lrq~~~l~L~~s~  160 (1362)
T TIGR02099        81 AGELLVKRVEVALDLWQSLLHRQPRLADLRVDGLALTLRRDDDGGWEVGGNPLTSNQSLDDNLLLLLLRQLDRLSLRDSR  160 (1362)
T ss_pred             CCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCE
T ss_conf             31013300589740011200455289998987535788554133230176046888887855158898428841230223


Q ss_pred             EEEEECCC-CCEEEEEEEEEEEC
Q ss_conf             99985688-81787620156621
Q gi|254780954|r  149 IKIIDQES-DQVYFLSDLNLQIS  170 (380)
Q Consensus       149 i~~~D~~~-~~~~~i~~i~l~l~  170 (380)
                      |.|.+... +....+...+|...
T Consensus       161 i~~~~~~~G~~~~~L~~~~L~w~  183 (1362)
T TIGR02099       161 ISLLTLRSGGDRLTLEIPQLRWL  183 (1362)
T ss_pred             EEECCCCCCCCCCCCCCHHCEEE
T ss_conf             13304113886564532000011


No 5  
>COG3164 Predicted membrane protein [Function unknown]
Probab=99.54  E-value=7.5e-13  Score=94.19  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECC-CEEEEEEEEEEECCCCCCCE
Q ss_conf             89999999999999999988552085--8878999999999829819996214899736-31799942798268998760
Q gi|254780954|r    4 RVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILP-FPSVFFKDIRIDQKEDGSFE   80 (380)
Q Consensus         4 ~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P-~p~i~~~~v~i~~~~~~~~~   80 (380)
                      |+++..|..++++++.++.+.+..-|  +.||++|+.++++.+|.||.| +.+.-+|-- -|.+.+.++.+..+++..  
T Consensus         6 ril~~t~a~l~Vl~aL~Vs~lR~llP~v~~~r~qi~~~~~~~tg~pV~i-~~L~~sW~~fgP~l~aq~I~a~~~~g~~--   82 (1271)
T COG3164           6 RILLLTGAALLVLAALLVSLLRQLLPLVNRYRPQIEDKISSVTGIPVRI-AQLQGSWRNFGPTLEAQDIRAGDPDGGR--   82 (1271)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-HHHCCEEECCCCCEEEEEEECCCCCCCE--
T ss_conf             8999998999999999999999988878777899999976531871787-0201513436661687300035876660--


Q ss_pred             EEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCC-CCCCCCCCC---EEEEEEEEECCEEEEEECC
Q ss_conf             6786799998702-6524971011389964489999888888055555-556766552---3653489728789998568
Q gi|254780954|r   81 SKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQR-KSTMDMIHN---VILEKIHVKGGRIKIIDQE  155 (380)
Q Consensus        81 ~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~-~~~~~~~~~---~~l~~i~i~~g~i~~~D~~  155 (380)
                      +.+.++++-+.+| +|+.+++.|..+++ +.++.+.++..|++.-... +.+......   -.+++|.+.|++|.|.+..
T Consensus        83 l~~~rV~la~d~wqSLl~~q~~f~dLt~-g~~L~lr~~~~g~~s~~g~~~~~~~~~~d~fLrQ~d~fdlrds~is~lt~s  161 (1271)
T COG3164          83 LSAARVTLALDVWQSLLHRQWQFRDLTF-GLQLTLRRDTTGAWSVNGGDGREDGRLSDLFLRQLDRFDLRDSALSFLTPS  161 (1271)
T ss_pred             EEEEEEEEHHHHHHHHHCCCEEEEEEEC-CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCEEEEECCC
T ss_conf             5566665469888666314445102211-227998617864200068987555741689986337434305547873688


Q ss_pred             CCCEEEEEEEEEEECCCCCC
Q ss_conf             88178762015662155455
Q gi|254780954|r  156 SDQVYFLSDLNLQISARFLN  175 (380)
Q Consensus       156 ~~~~~~i~~i~l~l~~~~~~  175 (380)
                      . ....+....+.......+
T Consensus       162 ~-~~a~L~~~~ltw~n~~~R  180 (1271)
T COG3164         162 G-PRAELAIPQLTWLNSPLR  180 (1271)
T ss_pred             C-CHHHHCCCCEEEECCCCC
T ss_conf             8-222213533144137754


No 6  
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=99.26  E-value=7.9e-11  Score=82.16  Aligned_cols=108  Identities=12%  Similarity=0.237  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC-CCCEEEEEEEEEEEE
Q ss_conf             9999999998855208588789999999998298199962148997363179994279826899-876067867999987
Q gi|254780954|r   13 FSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED-GSFESKIEGLSMRAE   91 (380)
Q Consensus        13 lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~-~~~~~~~~~~~v~i~   91 (380)
                      +++++++++++.+|+--...|..+|...++..|-+|.| ++++.+|+|. ++++.++.+.+|+. ..++++++++.++++
T Consensus        10 f~~v~a~I~~~~~~f~d~l~K~~ie~~~~~~~gA~VeI-~~v~~~l~P~-~i~i~glqVtDp~~Pm~Nl~~~~~i~~~i~   87 (554)
T TIGR03545        10 FLIVVAVILALLYFFFDLLAKKAIVRGGEAAFGAKVEI-ASVDVGLFPL-QLSIQGLQVTDPDKPMRNLFEIDRIDASID   87 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEECCCCCC-EEEEECEEECCCCCCCCCEEEEEEEEEECC
T ss_conf             99999999999999988999999999888750864777-7554133564-378803374499850101016303468534


Q ss_pred             HHHHHCCCCCCCEEEEECCEEEEEECCCCCC
Q ss_conf             0265249710113899644899998888880
Q gi|254780954|r   92 FLPLLSGEIRVFDMYIDQPHLNFYLSSKGVS  122 (380)
Q Consensus        92 l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~  122 (380)
                      +.+||.|++.|.++.++|..++-+|...|..
T Consensus        88 ~~~LL~~kviIe~~~i~gv~~~t~R~tsG~v  118 (554)
T TIGR03545        88 WDALLRGKVVIEEAAVEGLAFGTPRSTSGAV  118 (554)
T ss_pred             HHHHHHCEEEEEECEEEEEEECCCCCCCCCC
T ss_conf             6987422055030235213607856778766


No 7  
>COG2911 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65  E-value=0.00054  Score=41.48  Aligned_cols=148  Identities=9%  Similarity=-0.079  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCC---EEEEEEEEEEECCCCCC
Q ss_conf             588999999999999999998855208588789999999998298199962148997363---17999427982689987
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPF---PSVFFKDIRIDQKEDGS   78 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~---p~i~~~~v~i~~~~~~~   78 (380)
                      ||++.+.++++++++++++..+..+.-++.-..++-.++.+..... .+ +.++.++.+.   =.+...+++|....  .
T Consensus         8 ~~~~~~~~~~~l~~ill~v~~l~~~~~t~~G~~~~~~~~~~~~~~~-~~-~~vsg~~~~gll~~~~~~~~~~v~~~~--G   83 (1278)
T COG2911           8 MRWLKKASAGLLAVILLLVLALGGLLGTTPGLRYGLNAIDSWLPGL-DI-EKVSGSLRGGLLLGDVRYDRLGVADRA--G   83 (1278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CE-EEEEECCCCCCEECCCCCCCEEEEECC--C
T ss_conf             4799999999999999999998603024722468999998657678-72-479833758821366000202688056--7


Q ss_pred             CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECC
Q ss_conf             60678679999870265249710113899644899998888880555555567665523653489728789998568
Q gi|254780954|r   79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQE  155 (380)
Q Consensus        79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~~~~~l~~i~i~~g~i~~~D~~  155 (380)
                      ..+.+.++++..+..-|++.+.....+.-.+  +.+.+.+..-.--..+......+..++++..++...+|.+.+..
T Consensus        84 ~~~~~~~~~~~W~~~~l~~~~~~~~~isA~~--i~v~~~p~p~~~~s~~~~~~s~~lPi~l~~~~~~~~~i~i~~~~  158 (1278)
T COG2911          84 QLLLALDLRCLWSPSALFRLRLLADRISAGD--IAVLRPPTPDKEPSGPSSRISTPLPISLDLDALDVIRITIGKTT  158 (1278)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEECCEEEEECCCC
T ss_conf             2588515632467878766664210221130--01136899998888855567776676987031111157536531


No 8  
>pfam05359 DUF748 Domain of Unknown Function (DUF748).
Probab=97.39  E-value=0.0064  Score=35.09  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCEEEEEEEEECCEEEEEECCCC--CEEEEEEEEEEECCCC
Q ss_conf             52365348972878999856888--1787620156621554
Q gi|254780954|r  135 HNVILEKIHVKGGRIKIIDQESD--QVYFLSDLNLQISARF  173 (380)
Q Consensus       135 ~~~~l~~i~i~~g~i~~~D~~~~--~~~~i~~i~l~l~~~~  173 (380)
                      |.+.|+++.+.+|+|.|.|....  ..+.++++++.+....
T Consensus         1 w~~~i~~~~l~~g~i~f~D~~~~~~~~~~l~~l~~~l~~ls   41 (150)
T pfam05359         1 WRVSIGNLALENGSVDFADRSLSPPFATTIDPLNLTLSNLS   41 (150)
T ss_pred             CEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEECC
T ss_conf             97999079998999999968999880799986089997512


No 9  
>pfam08118 MDM31_MDM32 Yeast mitochondrial distribution and morphology (MDM) proteins. Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA.
Probab=96.78  E-value=0.031  Score=30.99  Aligned_cols=140  Identities=7%  Similarity=0.079  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC--------------------------------
Q ss_conf             588789999999998298199962148997363179994279826899--------------------------------
Q gi|254780954|r   29 WTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED--------------------------------   76 (380)
Q Consensus        29 ~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~--------------------------------   76 (380)
                      .+..-..+-+.+.+.+|..|.++..|.= =|-.=.|++++|-++-.++                                
T Consensus        72 qE~la~~vg~~ltk~sg~~vvFesAiVP-~W~~g~I~F~nv~VSrrP~~~~~~~kgs~~~~~~~~~~~~~~~~~~~~~~~  150 (503)
T pfam08118        72 QEYVARKVGNFLTKNSALTVVFESAIVP-DWSSGKISFRKVFVSRRPKLSHKFTKGSQHEAYERAKLALSENLLVEDEDF  150 (503)
T ss_pred             HHHHHHHHHHHCCCCCCCEEEEEECCCC-CCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999998765301367857998304567-766665999777897077656564557617788866553302455454434


Q ss_pred             -C----CCEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----CCCCCCCEEEEEEEEEC
Q ss_conf             -8----7606786799998702652497101138996448999988888805555555-----67665523653489728
Q gi|254780954|r   77 -G----SFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----TMDMIHNVILEKIHVKG  146 (380)
Q Consensus        77 -~----~~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----~~~~~~~~~l~~i~i~~  146 (380)
                       .    +-=++++.+.+.+++.-.+.|+=-|.++++.|..-.+.|.   ...|.....     ..-.+.++.++++.+.|
T Consensus       151 dd~nytqFDltI~~vnvtLSf~KW~nGkGli~dvei~GvrGvVdr~---~v~w~~~~dp~~y~~~~~pgdfe~~~fkm~D  227 (503)
T pfam08118       151 DDGNYTQFDLTIDQVNISLSLNKWINGKGMIDEVEINGLRGVVDRT---HVHWKADDDARNYKNVHQPGDFEISNFKMND  227 (503)
T ss_pred             CCCCEEEEEEEEEEEEEEEEEHHHHCCCCEEEEEEEEEEEEEEECC---EECCCCCCCHHHHHCCCCCCCEEEEEEEEEE
T ss_conf             5787268998888999999906751687312678998416899732---2316888997897344589977864589998


Q ss_pred             CEEEEEECCCCCEEEEEEEEEEECCC
Q ss_conf             78999856888178762015662155
Q gi|254780954|r  147 GRIKIIDQESDQVYFLSDLNLQISAR  172 (380)
Q Consensus       147 g~i~~~D~~~~~~~~i~~i~l~l~~~  172 (380)
                      .-+++.++...+...++-.+..++..
T Consensus       228 ~lvtvyqp~~frPf~vSIf~cdLPqL  253 (503)
T pfam08118       228 VLFTLYQPGGFRPFQVSIFNCELPQL  253 (503)
T ss_pred             EEEEEECCCCCCCEEEEEEECCCHHH
T ss_conf             89998738887620588640556454


No 10 
>PRK10695 hypothetical protein; Provisional
Probab=95.76  E-value=0.11  Score=27.64  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCC
Q ss_conf             9588999999999999999998855208588789999999998--29819996214899736317999427982689987
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI--VGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGS   78 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~--~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~   78 (380)
                      |.||....++++++++++.+..+..+      -..+..-+.-.  .|.++.+.....|+-.   ++.+.++++..  +.-
T Consensus         1 M~k~~k~~~~~lll~~l~~~~l~~T~------~~wlp~va~~wLP~g~~l~l~~~p~~~~~---~l~lp~~~~~~--~~C   69 (876)
T PRK10695          1 MLKKYKAVIALLLLLILVPLTLLMTL------PLWLPTVAGIWLPAGTRIALDQSPRWTRG---GLRLPDLRYLV--GDC   69 (876)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCEEEECCCCCEECC---CEECCCEEEEE--CCC
T ss_conf             96045789999999999998888622------46667662633799858971689830258---55558748881--885


Q ss_pred             CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEE
Q ss_conf             6067867999987026524971011389964489
Q gi|254780954|r   79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHL  112 (380)
Q Consensus        79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i  112 (380)
                      ++++++++++..  .  -+.++.+..++||-+-+
T Consensus        70 ~la~~~~~~l~~--~--~~w~l~~~~l~lD~aCL   99 (876)
T PRK10695         70 TLAHIDNLSLSW--P--SRWQLSIGTLTLDSACL   99 (876)
T ss_pred             CEEECCCCEECC--C--CCEEEECCCCCCCHHHH
T ss_conf             258853518825--6--30078503032158999


No 11 
>pfam01203 GSPII_N Bacterial type II secretion system protein N.
Probab=94.88  E-value=0.22  Score=25.93  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=49.0

Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf             588-9999999999999999988552085887899999999982981999621489973631799942798268998760
Q gi|254780954|r    2 LRR-VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFE   80 (380)
Q Consensus         2 mk~-ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~   80 (380)
                      ||| +++++.++.+++++.+..+|.-        .+..++  ..-..|.+. .++=++|   +=.+..+++.   +    
T Consensus         1 Mk~~~~~~~l~~~~~l~~Li~~lPA~--------~v~~~~--~lp~~v~l~-gvsGTlW---~G~a~~v~~~---~----   59 (251)
T pfam01203         1 MKRKIVIGLLFVVAYLVFLLAHLPAR--------LVLSLA--PLPAGVSLS-GVSGTLW---QGRAKRVSWQ---N----   59 (251)
T ss_pred             CCEEEHHHHHHHHHHHHHHHHHHHHH--------HHHHHC--CCCCCEEEE-CCCCCEE---ECEEEEEEEC---C----
T ss_conf             94453137899999999999985799--------998517--799853894-5455657---1347388998---6----


Q ss_pred             EEEEEEEEEEEHHHHHCCCCCCC
Q ss_conf             67867999987026524971011
Q gi|254780954|r   81 SKIEGLSMRAEFLPLLSGEIRVF  103 (380)
Q Consensus        81 ~~~~~~~v~i~l~~Ll~~~~~i~  103 (380)
                      ..+++++-++++|+||.|+++++
T Consensus        60 ~~lg~V~W~l~p~~Ll~G~~~~~   82 (251)
T pfam01203        60 LPLGRVSWSLSPLSLLTGRLKLD   82 (251)
T ss_pred             EECCEEEEEEEHHHHHCCCEEEE
T ss_conf             83200799962899717875899


No 12 
>COG4093 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33  E-value=0.3  Score=25.13  Aligned_cols=99  Identities=21%  Similarity=0.271  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCCCC
Q ss_conf             889999999999999999988552085887899999999--98298199962148997363-179994279826899876
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQAT--LIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDGSF   79 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s--~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~~~   79 (380)
                      ||+|+.+.  ++++++++....+|+--++.+++.-+++.  ++.|..+.- +++.++=+|+ ..|.-++|++.++..+- 
T Consensus        14 kr~~wl~i--~ivv~~g~ySaGWFylA~rle~~~~a~~a~l~a~Gv~~~c-~~l~~~GyPfRi~v~cd~v~~~d~~~G~-   89 (338)
T COG4093          14 KRLFWLVI--AIVVLIGAYSAGWFYLADRLEQQADAQAADLQARGVSGEC-ANLTFSGYPFRINVFCDKVRVDDPTEGW-   89 (338)
T ss_pred             CCHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECEEECCCCEEEEEEECCEEECCCCCCH-
T ss_conf             22348999--9999887750107667769999998764213103035525-1107505653898785124733786551-


Q ss_pred             EEEEEEEEEEEEHHHHHCCCCCCCEEEEECC
Q ss_conf             0678679999870265249710113899644
Q gi|254780954|r   80 ESKIEGLSMRAEFLPLLSGEIRVFDMYIDQP  110 (380)
Q Consensus        80 ~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p  110 (380)
                      .+++.+++-.-.+....+-     -..|++|
T Consensus        90 aas~g~l~s~AqvY~p~~~-----V~~L~gp  115 (338)
T COG4093          90 AASAGQLRSAAQVYNPGHW-----VLELDGP  115 (338)
T ss_pred             HHCCCCCCCCCCCCCCCCE-----EEECCCC
T ss_conf             1105433454300157725-----7744786


No 13 
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=92.98  E-value=0.29  Score=25.28  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH----------HHHCCHHHHH---HHHHHHHHHHHCCEEEEE
Q ss_conf             95889999999999999999988----------5520858878---999999999829819996
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTV----------PLFIDWTDFR---EDFERQATLIVGKKIAVK   51 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~----------~~~~d~~~~k---~~i~~~~s~~~g~~v~i~   51 (380)
                      ||||+|.++..+++++...+.+-          .-..++....   ..+.+.+++.+|++|.+.
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~   64 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLF   64 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9088999999999997432243048836899980699999999999999999999878978999


No 14 
>PRK10834 hypothetical protein; Provisional
Probab=83.13  E-value=1.8  Score=20.48  Aligned_cols=29  Identities=28%  Similarity=0.631  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             95889999999999999999988552085
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW   29 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~   29 (380)
                      |+||++.++.++++++++.++++-+.+.|
T Consensus         1 m~Krl~~~~~~~~~~~~~~i~~~d~wv~~   29 (239)
T PRK10834          1 MLKRVFYSLLVLIGLLLLTVLGLDRWMSW   29 (239)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97999999999999999999998798854


No 15 
>PRK11715 hypothetical protein; Provisional
Probab=82.08  E-value=2.9  Score=19.27  Aligned_cols=53  Identities=13%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEE
Q ss_conf             89999999999999999988552085887899999999982981999621489
Q gi|254780954|r    4 RVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKI   56 (380)
Q Consensus         4 ~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~   56 (380)
                      |++++.+.++++.+-..++--..-+-..++..+++++.+..|.+-+|.|++=+
T Consensus         9 K~~~i~~L~lLLlIPl~~I~~li~ER~~~~~~v~~eI~~swgg~Q~i~GPvL~   61 (427)
T PRK11715          9 KILTIGGLILLLLIPLGMIRGLISERSDYRDEVVDEIAQSWGGPQTLTGPVLV   61 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE
T ss_conf             99999999999999999999999999999999999999842788599524899


No 16 
>PHA00019 phage assembly protein
Probab=81.20  E-value=2.4  Score=19.74  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=33.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH-H-HHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf             95889999999999999999988552085-8-8789999999998298199962148
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW-T-DFREDFERQATLIVGKKIAVKGGIK   55 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~-~-~~k~~i~~~~s~~~g~~v~i~G~i~   55 (380)
                      |||++++.+. ++++..+++..-+.-++. | ..| .+-+.+++.+|+.+.++.+++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~s~~~isl~f~d~dIr-~vl~~la~~tg~NiVi~~~V~   55 (428)
T PHA00019          1 MIKSIFAKML-LFLLMFLSFSSFALPVELNNSPIR-EFVSWYSQQTGKSVVLGPDVK   55 (428)
T ss_pred             CHHHHHHHHH-HHHHHHHCCCCCEEEEEEECCCHH-HHHHHHHHHHCCEEEECCCCC
T ss_conf             9274899999-999877405674477885087799-999999984497399899977


No 17 
>KOG3448 consensus
Probab=80.47  E-value=1.2  Score=21.48  Aligned_cols=62  Identities=8%  Similarity=0.237  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf             588789999999998298199962148997363179994279826899876067867999987
Q gi|254780954|r   29 WTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFESKIEGLSMRAE   91 (380)
Q Consensus        29 ~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~~~~~~~v~i~   91 (380)
                      +..||..+-+.++-.+...+.|.|.+. ++-|++-+.+.++++.+++..+.+.++++..++=+
T Consensus         4 ysfFkslvg~~V~VeLKnd~~i~GtL~-svDqyLNlkL~di~v~d~~kyPhm~Sv~ncfIRGS   65 (96)
T KOG3448           4 YSFFKSLVGKEVVVELKNDLSICGTLH-SVDQYLNLKLTDISVTDPDKYPHMLSVKNCFIRGS   65 (96)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEEEC-CCCHHHEEEEEEEEEECCCCCCCCEEEEEEEEECC
T ss_conf             999997558748999818838987753-54521003776668607543898145556798142


No 18 
>pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.
Probab=79.92  E-value=3.5  Score=18.83  Aligned_cols=61  Identities=15%  Similarity=0.203  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHCCEEEEE--CCEEEEECCCEEEEEEEEEEEC
Q ss_conf             5889999999999999999-9885520858878999999999829819996--2148997363179994279826
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGA-FTVPLFIDWTDFREDFERQATLIVGKKIAVK--GGIKIHILPFPSVFFKDIRIDQ   73 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~-~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~--G~i~~~l~P~p~i~~~~v~i~~   73 (380)
                      ||++++.+.. +++++.+- -+..|-|.-    ++|++++.+...++-.+.  |     ++ ...+.++++.+.-
T Consensus         1 Mk~~~~~~~~-l~~~LsgC~~ls~ysISE----~Ein~yL~k~~~~~k~~gi~g-----l~-~~~~~l~~l~v~I   64 (177)
T pfam07273         1 MKKLLLLILL-LVLLLSGCASLSQYSISE----AEINQYLQKEVHLEKKVGIPG-----LA-PADVSLNDLDVQI   64 (177)
T ss_pred             CCHHHHHHHH-HHHHHHCCCCCCCEEECH----HHHHHHHHHHCCHHHHHCCCC-----CE-EEEEEECCCEEEE
T ss_conf             9148999999-999971557566252669----999999987457778608877-----33-5799973550462


No 19 
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=79.56  E-value=2.3  Score=19.91  Aligned_cols=52  Identities=23%  Similarity=0.275  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHH-HHHHHHHHHHHCCEEEEECCE
Q ss_conf             889999999999999999988-------5520858878-999999999829819996214
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFR-EDFERQATLIVGKKIAVKGGI   54 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k-~~i~~~~s~~~g~~v~i~G~i   54 (380)
                      |||++++++++++.++.++++       .||+.|..+- ...+.+-....|+.+++.|=+
T Consensus         7 ~RL~~v~~~~~~l~~a~~Lvl~al~~ni~yFytPsev~~~~~~~~~~~~~g~~iRlGGlV   66 (159)
T PRK13150          7 NRLWVVCAVLAGLGLTTALVLYALRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMV   66 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCCCCCCCCCCCCCCEEEEEEEE
T ss_conf             689999999999999999999998717448867899851212000256779659981498


No 20 
>PRK10598 hypothetical protein; Provisional
Probab=79.33  E-value=3.6  Score=18.71  Aligned_cols=65  Identities=8%  Similarity=0.091  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECC
Q ss_conf             5889999999999999-999988552085887899999999982981999621489973631799942798268
Q gi|254780954|r    2 LRRVLIGLGFLFSVVL-VGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQK   74 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~-~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~   74 (380)
                      ||+++...+.+++.++ ++.-+..|-|.    -++|++.+++...++..++    +.=....++.++++.+.-.
T Consensus         1 mkk~~l~~~l~l~~llsGC~~l~qYsIS----EqEin~YL~~~~~~~k~iG----i~gl~~a~i~l~dl~v~IG   66 (186)
T PRK10598          1 MKKFLLAAALLVSGLLVGCNQLTQYTIS----EQEINQYLAKHNNFSKDIG----LPGVADAHIVLTNLQSQIG   66 (186)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCEEEC----HHHHHHHHHHHCCHHHHCC----CCCCEEEEEEEEEEEEEEC
T ss_conf             9126999999999997143533644007----9999999987433787718----8874246899803045607


No 21 
>pfam06123 CreD Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA.
Probab=79.01  E-value=3.7  Score=18.65  Aligned_cols=55  Identities=11%  Similarity=0.125  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEE
Q ss_conf             5889999999999999999988552085887899999999982981999621489
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKI   56 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~   56 (380)
                      +.|++++.+.++++.+-..++--..-+-..++..+++++.+..|.+-+|.|++=.
T Consensus         4 ~~K~~~i~~L~llLlIPl~mI~~lI~ER~~~~~~v~~eI~~swgg~Q~i~GPvL~   58 (430)
T pfam06123         4 TLKILIIGILILLLLIPLLMVQGLISERQSRRDEVVAEIAQSWGGEQTLTGPVLV   58 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE
T ss_conf             8999999999999999999999999999999999999998742788599704899


No 22 
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=78.51  E-value=2.1  Score=20.14  Aligned_cols=17  Identities=18%  Similarity=0.548  Sum_probs=12.7

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             95889999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVL   17 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~   17 (380)
                      |||+|++++++++.+..
T Consensus         1 mmk~l~~~~~~~l~~~~   17 (293)
T PRK13861          1 MIKKLFLTLACLLFAAI   17 (293)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             90899999999998612


No 23 
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=77.67  E-value=2.8  Score=19.36  Aligned_cols=96  Identities=21%  Similarity=0.278  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHH-HHHHHHHHHHCCEEEEECCEE---EEECCC-EEEEEEEEE
Q ss_conf             8899999999999999999885-------5208588789-999999998298199962148---997363-179994279
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVP-------LFIDWTDFRE-DFERQATLIVGKKIAVKGGIK---IHILPF-PSVFFKDIR   70 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~-------~~~d~~~~k~-~i~~~~s~~~g~~v~i~G~i~---~~l~P~-p~i~~~~v~   70 (380)
                      ||+++++++++++.+++++++-       ||+.|..+.. .....-.-..|+.+++.|-+.   +..-+. +.++   +.
T Consensus         7 kRl~~i~~~~~~l~~a~~Lil~al~~ni~yF~TPsEv~~~~~~~~~~p~~g~~iRvGGlV~~gSv~r~~~~l~v~---F~   83 (161)
T PRK13165          7 KRLWLACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQKPEVGQRLRVGGMVMPGSVQRDPNSLKVS---FT   83 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCCEEE---EE
T ss_conf             679999999999999999999998717318867899850336544466668469970388638599779962799---99


Q ss_pred             EECCCCCCCEEEEEEEEEEEE-HHH-HHC-CCCCCCEEEEEC
Q ss_conf             826899876067867999987-026-524-971011389964
Q gi|254780954|r   71 IDQKEDGSFESKIEGLSMRAE-FLP-LLS-GEIRVFDMYIDQ  109 (380)
Q Consensus        71 i~~~~~~~~~~~~~~~~v~i~-l~~-Ll~-~~~~i~~i~L~~  109 (380)
                      |.+  ..      ..+.|... +.| ||+ |+-.|.+=+++.
T Consensus        84 iTD--~~------~~i~V~Y~GilPDLFrEGqGVVaeG~~~~  117 (161)
T PRK13165         84 VYD--AG------GSVTVTYEGILPDLFREGQGIVAQGVLEE  117 (161)
T ss_pred             EEC--CC------CEEEEEECCCCCHHHHCCCEEEEEEEECC
T ss_conf             976--88------67999984779403326983999999879


No 24 
>PRK10270 hypothetical protein; Provisional
Probab=75.00  E-value=3.5  Score=18.79  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV   23 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~   23 (380)
                      |||+++++.++++++.+++.+.
T Consensus         1 Mkk~~~~~~~l~~~l~i~~g~~   22 (340)
T PRK10270          1 MKKVLLIILLLLVVLGIAAGVG   22 (340)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9028999999999999999999


No 25 
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=75.00  E-value=4.5  Score=18.17  Aligned_cols=47  Identities=17%  Similarity=0.193  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEEEECC
Q ss_conf             9588999999999999999998855208588789999999--9982981999621
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIAVKGG   53 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~i~G~   53 (380)
                      |||.+...+..++++.++..++.|..+      .-|.+-+  .++-|--++.+|.
T Consensus         1 M~k~l~~al~~~l~~~vl~G~~YPl~v------tgiaq~~fp~qAnGSli~~~G~   49 (195)
T PRK00315          1 MMKGLRPALVLFLFLLLITGGAYPLLT------TGLGQWWFPWQANGSLIRDDGK   49 (195)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEECCE
T ss_conf             958899999999999999999999999------9999986756588875707999


No 26 
>PRK11622 putative ABC transporter solute-binding protein; Provisional
Probab=73.66  E-value=4.4  Score=18.25  Aligned_cols=49  Identities=22%  Similarity=0.344  Sum_probs=30.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH----------------HHHCCH------HHHHHHHHHHHHHHHCCEEE
Q ss_conf             95889999999999999999988----------------552085------88789999999998298199
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTV----------------PLFIDW------TDFREDFERQATLIVGKKIA   49 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~----------------~~~~d~------~~~k~~i~~~~s~~~g~~v~   49 (380)
                      |||+++.+++.+.++.+.+...-                ++|.-|      |.|-.++.+++.+++|..|+
T Consensus         1 ~~r~~~~~~~~l~~~~~~~~~~~~~~~W~~i~~~A~GqtV~f~aWGGs~~iN~yi~w~~~~l~~~y~ItL~   71 (401)
T PRK11622          1 MMRHLLALLGLLALLSLAAAASDAANTWQQILEEAKGQTVYFNAWGGSPAINRYLDWVAKELKERYGITLK   71 (401)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             95889999999998750145764448999999971698899997679577759999999999998596689


No 27 
>TIGR02112 cyd_oper_ybgE cyd operon protein YbgE; InterPro: IPR011846    This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria ..
Probab=72.22  E-value=5.6  Score=17.59  Aligned_cols=33  Identities=24%  Similarity=0.382  Sum_probs=23.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             9588999999999999999998855208588789999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFE   37 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~   37 (380)
                      |-|+.|..+..++.+..+    ...++||++|-+++.
T Consensus         8 ~dKg~LraLSfiLA~l~~----~~~~wdP~~Fa~~~g   40 (93)
T TIGR02112         8 MDKGLLRALSFILALLLA----GCVFWDPNRFAAAIG   40 (93)
T ss_pred             HCCHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHC
T ss_conf             134427999999999999----999618689998726


No 28 
>PRK08262 hypothetical protein; Provisional
Probab=70.77  E-value=6  Score=17.42  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHHHHHCCEEEEE
Q ss_conf             958899999999999999999885520858878-------999999999829819996
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFR-------EDFERQATLIVGKKIAVK   51 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k-------~~i~~~~s~~~g~~v~i~   51 (380)
                      ||||++++++.+++++++.+++--+.+.+.+..       +.=+..+.+++.+-+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~i~~~   60 (489)
T PRK08262          3 WIRRIILGLLLLLLVLAAVLAVRTFRFKSRQLQVAAVAPVAVDEDRAAQRLSEAIRFR   60 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEE
T ss_conf             8999999999999999999999985267865667888876588699999997340430


No 29 
>PRK06770 hypothetical protein; Provisional
Probab=68.66  E-value=6.2  Score=17.33  Aligned_cols=21  Identities=10%  Similarity=0.368  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             588999999999999999998
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFT   22 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~   22 (380)
                      ||+++++++++..++++++.+
T Consensus         1 mKk~~kwi~ii~~~~Vl~ig~   21 (185)
T PRK06770          1 MKKLFKWIGIIAGMAVLGIGV   21 (185)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             905999999999999999988


No 30 
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=67.41  E-value=3.1  Score=19.12  Aligned_cols=19  Identities=16%  Similarity=0.214  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~   19 (380)
                      ||||++.+++.+++|..++
T Consensus         1 mm~~~l~~~~~~~~L~GC~   19 (238)
T PRK12696          1 MIRKLLAASCAVLLLSGCN   19 (238)
T ss_pred             CHHHHHHHHHHHHHHHCCC
T ss_conf             9589999999999951656


No 31 
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=66.34  E-value=7.5  Score=16.82  Aligned_cols=17  Identities=18%  Similarity=0.196  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHHHHCCE
Q ss_conf             87899999999982981
Q gi|254780954|r   31 DFREDFERQATLIVGKK   47 (380)
Q Consensus        31 ~~k~~i~~~~s~~~g~~   47 (380)
                      .|-.++-+++=+++|-.
T Consensus       264 YfaE~VRqe~~~~yge~  280 (797)
T COG5009         264 YFAEMVRQEMIRRYGEE  280 (797)
T ss_pred             HHHHHHHHHHHHHHCHH
T ss_conf             89999999999983625


No 32 
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=66.16  E-value=7.6  Score=16.80  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=33.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEE-EEC
Q ss_conf             9588999999999999999998855208588789999999--998298199-962
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIA-VKG   52 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~-i~G   52 (380)
                      |||-+...+.+.+++.++..++.|.++      .-|.+.+  .++-|-.|+ .+|
T Consensus         1 m~~~lr~Al~~~~~l~li~G~iYPl~~------t~igq~~Fp~QAnGSli~~~dg   49 (190)
T COG2156           1 MMRQLRPALVLTLVLLLITGLIYPLLV------TGIGQAAFPNQANGSLIRDGDG   49 (190)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEECCCC
T ss_conf             923678999999999999999888999------9999885723368976676899


No 33 
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.70  E-value=3.3  Score=18.94  Aligned_cols=20  Identities=25%  Similarity=0.632  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAF   21 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~   21 (380)
                      ||++++++.++++++.++++
T Consensus         1 MKkil~~ilall~~ii~a~~   20 (113)
T COG5294           1 MKKILIGILALLLIIIGALF   20 (113)
T ss_pred             CCCHHHHHHHHHHHHHHHHE
T ss_conf             90439999999999986621


No 34 
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=64.95  E-value=7.4  Score=16.88  Aligned_cols=48  Identities=23%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHHHHHHHHHHHHHCCEEEEECCEE
Q ss_conf             889999999999999999988-------55208588789999999998298199962148
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFREDFERQATLIVGKKIAVKGGIK   55 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~   55 (380)
                      ||+++++.+++++.+++++++       .||+.|..+.   +.  ....|+.++++|-+.
T Consensus         6 kRl~~i~~~~~~~~~~~~Lil~al~~n~~yf~tPsEl~---~~--~~~~~~~iRvgG~V~   60 (130)
T pfam03100         6 RRLLLVLAALAALGLAVALVLYALRDNIVFFYTPSEVA---AG--KAPPGRRIRLGGLVE   60 (130)
T ss_pred             EEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH---CC--CCCCCCEEEEEEEEE
T ss_conf             45478999999999999999998761812998799982---57--766686899988996


No 35 
>PRK11627 hypothetical protein; Provisional
Probab=64.84  E-value=5.2  Score=17.80  Aligned_cols=19  Identities=32%  Similarity=0.461  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~   19 (380)
                      |||+++..+..++.+..++
T Consensus         1 ~mkk~~~~l~a~~lL~gCa   19 (192)
T PRK11627          1 MLKKILFPLVALFMLAGCA   19 (192)
T ss_pred             CHHHHHHHHHHHHHHHHHC
T ss_conf             9287999999999998606


No 36 
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=63.71  E-value=8.2  Score=16.61  Aligned_cols=25  Identities=16%  Similarity=0.277  Sum_probs=15.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999998855
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPL   25 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~   25 (380)
                      |=||+|++++++++++++++.+..+
T Consensus         1 ~KKkil~~i~~v~~vlll~~g~~~~   25 (303)
T PRK09379          1 MKKKILFWILGIIGVLIIGGGIYAY   25 (303)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf             9826603699999999999999999


No 37 
>PRK10604 sensor protein RstB; Provisional
Probab=63.40  E-value=8.6  Score=16.49  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV   23 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~   23 (380)
                      |||||+-+..+++++++.+.++
T Consensus         1 MkrLF~~~~l~~~~~~~~~~~l   22 (433)
T PRK10604          1 MKKLFIQFYLLLFVCFLVMTLL   22 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9057999999999999999999


No 38 
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional
Probab=63.31  E-value=8.6  Score=16.48  Aligned_cols=50  Identities=18%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------------------CCHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             5889999999999999999988552------------------0858878999999999829819996
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLF------------------IDWTDFREDFERQATLIVGKKIAVK   51 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~------------------~d~~~~k~~i~~~~s~~~g~~v~i~   51 (380)
                      ||||+.++..+++++...+..+.+.                  +.-..+|..+...+....|-+|-++
T Consensus         1 mkrl~~~L~~ll~v~~L~lg~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~n~aD~kl~t~~g~KIDlN   68 (144)
T PRK02515          1 MKRLLSWLVRLLVVLSLLLGLLGWLGPTAQAGSAYALLDPLLSVLAAEIRNAADAKLATERGEKIDLN   68 (144)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCC
T ss_conf             91799999999999999999844661366630132001432016899871568888888715640256


No 39 
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770    This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria .  .
Probab=61.73  E-value=9.2  Score=16.31  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=18.8

Q ss_pred             HHHHH----HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             58899----999999999999999885520
Q gi|254780954|r    2 LRRVL----IGLGFLFSVVLVGAFTVPLFI   27 (380)
Q Consensus         2 mk~ll----~~~~~~lvl~~~~~~~~~~~~   27 (380)
                      ||++|    ++++-++|++++++.+..+++
T Consensus         7 ~Kk~Lnkkri~i~~~~vll~~~gs~~~y~~   36 (373)
T TIGR00247         7 MKKVLNKKRIIILLLLVLLLIIGSILLYKI   36 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             455665668999999999999988998877


No 40 
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.28  E-value=6.5  Score=17.20  Aligned_cols=26  Identities=35%  Similarity=0.507  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             95889999999999999999988552
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      |||.+++++|.+.+.+.+..+.+|.+
T Consensus         1 ~~r~i~i~iGfl~l~LGIiGifLPlL   26 (119)
T COG2832           1 MMRIIYIILGFLSLALGIIGIFLPLL   26 (119)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             95007999999999998997607656


No 41 
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=60.46  E-value=8.5  Score=16.53  Aligned_cols=47  Identities=28%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf             8899999999999999999885-------520858878999999999829819996214
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVP-------LFIDWTDFREDFERQATLIVGKKIAVKGGI   54 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~-------~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i   54 (380)
                      ||+++++++++++.+++++++-       ||+.|..+.     +-....|+.+++.|-+
T Consensus         7 kRl~~v~~~~~~l~~a~~Lil~al~~ni~yFyTPsEi~-----~~~~~~~~~iRvGGlV   60 (149)
T PRK13254          7 RRLLIILGALAALGLAVALVLYALRQNIVFFYTPSEVA-----EGEAPAGKRFRLGGLV   60 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH-----CCCCCCCCEEEEEEEE
T ss_conf             24789999999999999999999862806997889994-----3766679679998999


No 42 
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=59.65  E-value=10  Score=16.09  Aligned_cols=50  Identities=18%  Similarity=0.252  Sum_probs=33.2

Q ss_pred             HHHHHHHHHH--HHHHHHHHHHH----HHHHCCHHHHH-HHHHHHHHHHHCCEEEEE
Q ss_conf             5889999999--99999999998----85520858878-999999999829819996
Q gi|254780954|r    2 LRRVLIGLGF--LFSVVLVGAFT----VPLFIDWTDFR-EDFERQATLIVGKKIAVK   51 (380)
Q Consensus         2 mk~ll~~~~~--~lvl~~~~~~~----~~~~~d~~~~k-~~i~~~~s~~~g~~v~i~   51 (380)
                      |||+...+.+  ++.+.+.++.+    ...+++|..|- +.+.++-++.+|.+|++.
T Consensus         1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i~~W~~Yi~~~~i~~Fe~etGikV~~~   57 (348)
T PRK09501          1 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYS   57 (348)
T ss_pred             CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf             936899999999999735033543389799987100189789999999989889999


No 43 
>pfam03699 UPF0182 Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.
Probab=59.45  E-value=10  Score=16.07  Aligned_cols=61  Identities=20%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----CCHH---HHHHHHHHHHH---HHHCCEEEEECCEEEEECC-CEEEEEEE
Q ss_conf             889999999999999999988552-----0858---87899999999---9829819996214899736-31799942
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLF-----IDWT---DFREDFERQAT---LIVGKKIAVKGGIKIHILP-FPSVFFKD   68 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~~v~i~G~i~~~l~P-~p~i~~~~   68 (380)
                      |...++++.++++.+++..+.|.+     |.||   .=+++|++-+.   +++|.+     +++..-++ ...++.++
T Consensus       270 ~~~~~~~~l~~~~~iv~g~i~P~~vQ~f~V~PnE~~~E~pYI~rnI~~TR~AygLd-----~i~~~~~~~~~~lt~~~  342 (771)
T pfam03699       270 RLPAIALALLVVLAILLGGVYPALVQQFVVKPNELELERPYIERNIAATRQAYGLD-----KIEEKDFPADTNLTAAD  342 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC-----CEEEEECCCCCCCCHHH
T ss_conf             78999999999999999999987647889888735534669999999999862987-----51798568878779999


No 44 
>COG4509 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.13  E-value=11  Score=15.93  Aligned_cols=33  Identities=21%  Similarity=0.087  Sum_probs=22.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHH
Q ss_conf             95889999999999999999988---5520858878
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTV---PLFIDWTDFR   33 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~---~~~~d~~~~k   33 (380)
                      ||||++...-.+++++++.....   ..++...+-|
T Consensus         2 ~mkrfl~~~~tLv~viV~~f~~~kl~~~~ie~~qn~   37 (244)
T COG4509           2 MMKRFLKLSDTLVVVIVFCFSFYKLLIAAIEIYQNR   37 (244)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             089999887788888889988999999999765547


No 45 
>PRK00068 hypothetical protein; Validated
Probab=56.05  E-value=12  Score=15.72  Aligned_cols=42  Identities=19%  Similarity=0.142  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----CCHH---HHHHHHHHHHH---HHHCC
Q ss_conf             9999999999999999988552-----0858---87899999999---98298
Q gi|254780954|r    5 VLIGLGFLFSVVLVGAFTVPLF-----IDWT---DFREDFERQAT---LIVGK   46 (380)
Q Consensus         5 ll~~~~~~lvl~~~~~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~   46 (380)
                      ..++++.+++..++...+.|.+     +.||   .=+++|++-+.   +++|.
T Consensus       284 p~i~~~l~~~~~iv~g~i~P~~vQ~f~V~PNe~~~E~pYI~rNI~aTR~AygL  336 (978)
T PRK00068        284 PAIAVVLLLLSSIVVGAVWPLIVEQFSVKPNAAQKESEYISRNIDATRKAYGI  336 (978)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             89999999999999988888775136876654554257999999999997099


No 46 
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=55.87  E-value=2  Score=20.25  Aligned_cols=82  Identities=23%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEC------CEEEEE-CCCE-EEEEEEEEEEC
Q ss_conf             588999999999999999998855208588789999999998298199962------148997-3631-79994279826
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKG------GIKIHI-LPFP-SVFFKDIRIDQ   73 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G------~i~~~l-~P~p-~i~~~~v~i~~   73 (380)
                      ||++++++.+++++++.   ...+.++      +=++.+-.++|+.+.-.+      +-.++| +|+. .+..=|.++..
T Consensus         1 m~~~ilviii~vlv~l~---~s~yiV~------e~e~aVVlrFGk~vr~~~~~~~v~ePGLhfkiPfI~~V~~~d~Ri~~   71 (334)
T PRK11029          1 MRKSVIAIIIIVLVVLY---MSVFVVK------EGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQT   71 (334)
T ss_pred             CCHHHHHHHHHHHHHHH---HEEEEEC------CCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEE
T ss_conf             91259999999999998---5689975------77089999669552366777643589805873754188981227997


Q ss_pred             CCC-CCCEEEEEEEEEEEEH
Q ss_conf             899-8760678679999870
Q gi|254780954|r   74 KED-GSFESKIEGLSMRAEF   92 (380)
Q Consensus        74 ~~~-~~~~~~~~~~~v~i~l   92 (380)
                      -+. ...+++.++..+.++.
T Consensus        72 ~d~~~~~vlT~D~k~i~VD~   91 (334)
T PRK11029         72 MDNQADRFVTKEKKDLIVDS   91 (334)
T ss_pred             EECCCCEEEECCCCEEEEEE
T ss_conf             60797268851784899855


No 47 
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.69  E-value=7.4  Score=16.88  Aligned_cols=47  Identities=19%  Similarity=0.193  Sum_probs=23.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHCCE
Q ss_conf             9588999999999999999998855208-----5887899999999982981
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFID-----WTDFREDFERQATLIVGKK   47 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d-----~~~~k~~i~~~~s~~~g~~   47 (380)
                      |.||.+++++++++++++.++...+++-     ...-+.+.++.+++.++..
T Consensus         1 ~Rkk~~~~i~ii~viflai~~s~~~~~~~s~~P~~~~~~qA~~~a~~~~dL~   52 (161)
T COG5353           1 MRKKHLIIIIIILVIFLAIILSIALFFWKSMKPYHEAEEQAIDLATEETDLA   52 (161)
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             9724766224688999999999999875751844216889999875134603


No 48 
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=54.44  E-value=9.3  Score=16.29  Aligned_cols=24  Identities=17%  Similarity=0.167  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999999988552
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      ||+++++++.+++++++..+..+|
T Consensus        16 kKLiiii~~~vlll~ggggg~~~~   39 (168)
T PRK05696         16 KKLIIIIVVGVLLALGGGGAAWFF   39 (168)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             332047999999999999999999


No 49 
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=53.10  E-value=12  Score=15.52  Aligned_cols=29  Identities=17%  Similarity=0.193  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             99999999999999999885520858878
Q gi|254780954|r    5 VLIGLGFLFSVVLVGAFTVPLFIDWTDFR   33 (380)
Q Consensus         5 ll~~~~~~lvl~~~~~~~~~~~~d~~~~k   33 (380)
                      .++-++|.+|++++++++.-+||.++.-.
T Consensus        14 ~vLNiaI~iV~llIiiva~~lf~~~~~~~   42 (214)
T pfam07423        14 RVLNIAIGIVVVLIIIVAYQLFFPSSPSD   42 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHEEECCCCCC
T ss_conf             45579999999999997664023588753


No 50 
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=52.88  E-value=13  Score=15.41  Aligned_cols=42  Identities=21%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEE
Q ss_conf             887899999999982981999621489973631799942798
Q gi|254780954|r   30 TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRI   71 (380)
Q Consensus        30 ~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i   71 (380)
                      +.-+..+...+++.|||+|+++=+++=++.-...|.++|=-|
T Consensus       387 d~Q~~RL~~~L~riYGr~v~l~v~VDP~vLGGl~VrVGDEVI  428 (445)
T PRK13428        387 DAQRTRLTEVLSRIYGHPVSVQLHIDPELLGGLSIAVGDEVI  428 (445)
T ss_pred             HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEECCEEE
T ss_conf             999999999999986872268634574101773898788434


No 51 
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=52.81  E-value=10  Score=16.10  Aligned_cols=24  Identities=8%  Similarity=0.163  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999999988552
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      |++++++++++++++++..+..+|
T Consensus        12 kkl~iii~~~~lll~~~g~g~~~~   35 (159)
T PRK07021         12 KSIWLILLILITLAAAAGAGYSYW   35 (159)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             604058999999999999999999


No 52 
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=51.11  E-value=14  Score=15.24  Aligned_cols=40  Identities=8%  Similarity=-0.013  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988552085887899999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQAT   41 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s   41 (380)
                      ..|+++.+..+.++++++...+..+.-...|..|+.++..
T Consensus         9 ~~Klfl~~~~~~~~~~~~~~~~~~~~f~~~f~~y~~~~~~   48 (467)
T PRK10549          9 TGKLFLAIFATCIVLLITMHWAVRISFERGFIDYIKHGNE   48 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999999999989999999899


No 53 
>pfam02158 Neuregulin Neuregulin family.
Probab=51.04  E-value=12  Score=15.71  Aligned_cols=43  Identities=19%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999999885-52085887899999999982
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVP-LFIDWTDFREDFERQATLIV   44 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~-~~~d~~~~k~~i~~~~s~~~   44 (380)
                      -||+|+|-||-+.|+|++++-++ -+--.-.-|.++-..+.+.+
T Consensus         6 QKRVLTITGICvALLVVGIvCVV~AYCKTKKQRKkmH~hLrQnl   49 (406)
T pfam02158         6 QKRVLTITGICIALLVVGDMCVVDAYCKTKKQRKKLHDRLRQSL   49 (406)
T ss_pred             HHHEHHHHHHHHHHHHHHHEEEEHHHHCCHHHHHHHHHHHHHHH
T ss_conf             41021131352887641023662144313888999999998653


No 54 
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=50.56  E-value=14  Score=15.19  Aligned_cols=108  Identities=13%  Similarity=0.131  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECC-CEEEEEEEE---EEECCCCC
Q ss_conf             58899999999999999999885520858878999999999829819996214899736-317999427---98268998
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP-FPSVFFKDI---RIDQKEDG   77 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P-~p~i~~~~v---~i~~~~~~   77 (380)
                      |+|++..++.++..+..+.. .+.--+.+..+..+++.+++++.-+-  +|.++++..+ .|++.+..-   ....+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~i~~~a~~fv~~q~~~~~--~g~v~V~~~~lD~Rl~l~~C~~~~~~~~~~~   81 (236)
T PRK07018          5 LKRFLAILALLLSPLSAAAF-AATQQSISAIQEAAEQFVEQQLAGPS--NGKVSVTVATLDPRLLLPACDQLEPSLPSNA   81 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89999999999998766663-37889999999999999998605799--9769999717897888889998602067898


Q ss_pred             CCEEEEEEEEEEEEHH-H-HHCCCCCCCEEEEECCEEEEEE
Q ss_conf             7606786799998702-6-5249710113899644899998
Q gi|254780954|r   78 SFESKIEGLSMRAEFL-P-LLSGEIRVFDMYIDQPHLNFYL  116 (380)
Q Consensus        78 ~~~~~~~~~~v~i~l~-~-Ll~~~~~i~~i~L~~p~i~l~~  116 (380)
                      .   .-.++++.++=- | -|+- ..--++.+.++.+...+
T Consensus        82 ~---~~g~~tV~VrC~~~~~W~~-yv~v~V~~~~~vvVa~r  118 (236)
T PRK07018         82 R---LWGNVTVGVRCGGPYPWTV-YVPVRVQVTGPYVVAAR  118 (236)
T ss_pred             C---CCCEEEEEEECCCCCCCEE-EEEEEEEEEEEEEEEEC
T ss_conf             6---5562389999299999779-99999999988999944


No 55 
>PRK04792 tolB translocation protein TolB; Provisional
Probab=48.80  E-value=14  Score=15.27  Aligned_cols=16  Identities=6%  Similarity=0.353  Sum_probs=11.3

Q ss_pred             EEEEEEEHHHHHCCCC
Q ss_conf             7999987026524971
Q gi|254780954|r   85 GLSMRAEFLPLLSGEI  100 (380)
Q Consensus        85 ~~~v~i~l~~Ll~~~~  100 (380)
                      ++.+++.++..++++.
T Consensus       112 ~~~V~f~L~DV~~g~~  127 (450)
T PRK04792        112 KYVVNYQLVDVVRGQL  127 (450)
T ss_pred             EEEEEEEEEECCCCCC
T ss_conf             4999999998016510


No 56 
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=48.14  E-value=16  Score=14.96  Aligned_cols=51  Identities=8%  Similarity=0.094  Sum_probs=30.8

Q ss_pred             CHHHHHHH---HHHHHHHHHHHH--HH--H---HHHCCHH-HHHHHHHHHHHHHHCCEEEEE
Q ss_conf             95889999---999999999999--98--8---5520858-878999999999829819996
Q gi|254780954|r    1 MLRRVLIG---LGFLFSVVLVGA--FT--V---PLFIDWT-DFREDFERQATLIVGKKIAVK   51 (380)
Q Consensus         1 ~mk~ll~~---~~~~lvl~~~~~--~~--~---~~~~d~~-~~k~~i~~~~s~~~g~~v~i~   51 (380)
                      |||++...   .++.+++++++.  .+  -   ..+++|. .+.+.+.+.-++.+|.+|...
T Consensus         1 m~k~~~~~~~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~~~~~~~F~k~tGi~V~~~   62 (363)
T COG0687           1 MMKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPALLKPFEKETGIKVVYD   62 (363)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf             94146666789999999998600045662578599964787557788998999989979995


No 57 
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=47.23  E-value=16  Score=14.88  Aligned_cols=47  Identities=15%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHHHHHHHHHHHHHCCEEEEECCE
Q ss_conf             889999999999999999988-------5520858878999999999829819996214
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFREDFERQATLIVGKKIAVKGGI   54 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i   54 (380)
                      ||+++++++++++.++.++++       .||+.|..+.     .-....++.+++.|-+
T Consensus         7 ~Rl~~i~~~~~~~~~av~Lil~al~~ni~yF~TPsEv~-----~~~~~~~~~iRvGGlV   60 (156)
T PRK13159          7 QRLWLVIGVLTAAALAVTLIVFALQRNMSYLFTPSQVR-----AGAAAGYQQFRLGGMV   60 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH-----CCCCCCCCEEEEEEEE
T ss_conf             89999999999999999999999861827997899983-----5666789779997899


No 58 
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=47.11  E-value=16  Score=14.86  Aligned_cols=22  Identities=5%  Similarity=0.025  Sum_probs=11.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFT   22 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~   22 (380)
                      |.+|++.+..++++++++++.+
T Consensus         1 kknkli~Imiiil~~l~l~G~~   22 (142)
T PRK07718          1 KKNKLIKIMLIILIVIALLGTA   22 (142)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9861066999999999999999


No 59 
>COG4640 Predicted membrane protein [Function unknown]
Probab=46.65  E-value=16  Score=14.82  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             9999999999999999885520858878999999999
Q gi|254780954|r    6 LIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL   42 (380)
Q Consensus         6 l~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~   42 (380)
                      +.++++++|+++++++..-+|-+|++....+|+.++.
T Consensus        55 was~a~~lIlii~~~~fgk~fssp~~~vk~le~Ai~~   91 (465)
T COG4640          55 WASGAFILILIIILFFFGKNFSSPEAQVKILENAIEN   91 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             4788999999999999754038888999999998741


No 60 
>PRK02693 apocytochrome f; Reviewed
Probab=44.40  E-value=17  Score=14.79  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=25.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf             95889999999999999999988552-0858878999999999829819996
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLF-IDWTDFREDFERQATLIVGKKIAVK   51 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~-~d~~~~k~~i~~~~s~~~g~~v~i~   51 (380)
                      ||||.+..+.+.+++++ +.++.|-. .-|.-|-++--+--.+++||=|--+
T Consensus         1 ~~~~~l~~~~~~~~~~~-~~~~~p~~s~AYPi~AQq~yenPREAtGrIVCAN   51 (312)
T PRK02693          1 LMRRSLSLILGSLLLLL-SDLSAPQAAWAYPFWAQQNYESPREATGKIVCAN   51 (312)
T ss_pred             CCHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHCCCCCHHHCCCEEEEC
T ss_conf             92136889999999998-8861676222063657534588134059689541


No 61 
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=43.87  E-value=18  Score=14.56  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEE
Q ss_conf             887899999999982981999621489973631799942798
Q gi|254780954|r   30 TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRI   71 (380)
Q Consensus        30 ~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i   71 (380)
                      +.-+..+.+.+++.+|++|+++-.++=++.-...|.++|-.|
T Consensus       213 ~~Q~~~L~~~L~~~~G~~v~l~~~VDp~llGG~~i~vGd~vi  254 (271)
T PRK13430        213 DEQKQRLAAALSRIYGRQIHLNSEVDPSLLGGMRVQVGDEVI  254 (271)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCEEEEECCEEE
T ss_conf             999999999999997892178856770341835998899965


No 62 
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.45  E-value=18  Score=14.52  Aligned_cols=16  Identities=19%  Similarity=0.110  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVL   17 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~   17 (380)
                      ||.+++++.++++++-
T Consensus         1 Mr~l~~~L~~ll~~LQ   16 (105)
T PRK00888          1 MRLLTLVLLALLVWLQ   16 (105)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9669999999999999


No 63 
>pfam05540 Serpulina_VSP Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.
Probab=42.55  E-value=9.3  Score=16.27  Aligned_cols=36  Identities=14%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHHCCHHHHHHHHH
Q ss_conf             5889999999999999999988--------55208588789999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV--------PLFIDWTDFREDFE   37 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~--------~~~~d~~~~k~~i~   37 (380)
                      |||++++...++.+.-+.++..        -+++|-|++|.+.-
T Consensus         1 MKK~lL~~~a~lti~~~SvFGmYG~~~dwiDFL~dgNQ~RaRmD   44 (377)
T pfam05540         1 MKKFLLTALAILTIASASAFGMYGDQDDWIDFLTHGNQFRARMD   44 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCEEEEEEH
T ss_conf             90438999999999865661532577616443205541134321


No 64 
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=42.01  E-value=19  Score=14.39  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             58899999999999999999885520
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFI   27 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~   27 (380)
                      |+++++++++++++.+.++.+.=.|+
T Consensus         1 ~~~~~i~l~vi~il~ll~~~~yN~lv   26 (185)
T COG1704           1 LRRFLIILAVIVILLLLAVGGYNGLV   26 (185)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             92369999999999999999651499


No 65 
>PRK11633 hypothetical protein; Provisional
Probab=41.27  E-value=20  Score=14.32  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             99999999999999885520858
Q gi|254780954|r    8 GLGFLFSVVLVGAFTVPLFIDWT   30 (380)
Q Consensus         8 ~~~~~lvl~~~~~~~~~~~~d~~   30 (380)
                      =|.|.+||++++++.+|.++|-.
T Consensus         8 RLVGaiVLValaVIfLP~l~Dg~   30 (218)
T PRK11633          8 RLVGTIVLVALGVIVLPGLLDGQ   30 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88979999999999321652698


No 66 
>PRK03757 hypothetical protein; Provisional
Probab=41.18  E-value=8.8  Score=16.44  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHCCHH
Q ss_conf             58899999999999999-999885520858
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLV-GAFTVPLFIDWT   30 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~-~~~~~~~~~d~~   30 (380)
                      |||++++++..++++.. .+.+..|-+|++
T Consensus         1 mkk~~l~~~l~a~~~~~~~A~a~~y~iDp~   30 (191)
T PRK03757          1 MKKTLLGLTLGSLLFSAGSAVAADYKIDKE   30 (191)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCEEECCC
T ss_conf             904399999999986304045752788898


No 67 
>pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity.
Probab=40.79  E-value=20  Score=14.27  Aligned_cols=14  Identities=14%  Similarity=0.380  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             58899999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSV   15 (380)
Q Consensus         2 mk~ll~~~~~~lvl   15 (380)
                      ||++++.+++.++.
T Consensus         1 MKK~~i~~~~~l~s   14 (126)
T pfam04076         1 MKKLAIALASALAS   14 (126)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             95689999999984


No 68 
>COG3790 Predicted membrane protein [Function unknown]
Probab=40.69  E-value=20  Score=14.26  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             958899999999999999999885520858878999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDF   36 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i   36 (380)
                      |=|+.|..+.+++...    ++.-.|+|||+|-..+
T Consensus        12 ~dK~~LraLSfvla~~----la~~~fwdpn~faa~~   43 (97)
T COG3790          12 MDKGPLRALSFVLAFL----LAGCVFWDPNRFAART   43 (97)
T ss_pred             HCCCCHHHHHHHHHHH----HHHHHHCCHHHHHHHH
T ss_conf             6533078999999999----9998831867888873


No 69 
>pfam11947 DUF3464 Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=38.59  E-value=16  Score=14.83  Aligned_cols=28  Identities=18%  Similarity=0.212  Sum_probs=17.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9588999999999999999998855208
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFID   28 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d   28 (380)
                      |+||+.+..|+...+-+....+..++++
T Consensus        57 M~rR~~~~~GiP~~lg~~~f~~~y~l~~   84 (149)
T pfam11947        57 MIRRIAFFSGIPTALGMAVFVVSYLLVS   84 (149)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHEEE
T ss_conf             9999999817158889999877761026


No 70 
>PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional
Probab=37.91  E-value=22  Score=14.00  Aligned_cols=39  Identities=10%  Similarity=0.134  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHH
Q ss_conf             5889999999999999999988552085887-8999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDF-REDFERQATL   42 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~-k~~i~~~~s~   42 (380)
                      |-+++.+++.+ |-+++|+ ++.++.....- ...+++++.+
T Consensus         1 M~W~~ali~lv-vGiiIG~-~~~R~~~~~~~~q~~Le~eLe~   40 (134)
T PRK11677          1 MTWEYALIGLV-VGIIIGA-VAMRFGNRKLRQQQALQYELEK   40 (134)
T ss_pred             CCHHHHHHHHH-HHHHHHH-HHHHHCCCCHHHHHHHHHHHHH
T ss_conf             92899999999-9999999-9999817511679999999999


No 71 
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=37.83  E-value=20  Score=14.37  Aligned_cols=22  Identities=23%  Similarity=0.033  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV   23 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~   23 (380)
                      +|++++++.++++++++++...
T Consensus        14 ~k~~~~I~liv~ivl~~~a~~~   35 (159)
T COG1580          14 KKKSLWILLIVLIVLLALAGAG   35 (159)
T ss_pred             CCCEEEHHHHHHHHHHHHHHHH
T ss_conf             7751122799999999999888


No 72 
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=37.58  E-value=23  Score=13.97  Aligned_cols=22  Identities=18%  Similarity=0.307  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999999988552
Q gi|254780954|r    5 VLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         5 ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      +|+++++++++++++.++.|++
T Consensus         1 ~FWi~~~~l~~~a~~~i~~Pl~   22 (117)
T TIGR03142         1 LFWIVAALLTLVALLFLLLPLL   22 (117)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9589999999999999999995


No 73 
>PRK10002 outer membrane protein F; Provisional
Probab=37.30  E-value=13  Score=15.35  Aligned_cols=43  Identities=16%  Similarity=0.069  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEE
Q ss_conf             9588999999999999999998855208588789999999998298199962148997
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHI   58 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l   58 (380)
                      ||||-++.++++.+++...+.++-.               =..=|-.|.|.|.+..+.
T Consensus         1 mMKK~~LA~ai~all~ag~a~AAeV---------------Yn~DGn~Ldl~Gr~~~~~   43 (362)
T PRK10002          1 MMKRNILAVIVPALLVAGTANAAEI---------------YNKDGNKVDLYGKAVGLH   43 (362)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEE---------------EECCCCEEEECCEEEEEE
T ss_conf             9308799999999986064417899---------------858998898738997889


No 74 
>cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation.  Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure.  Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=36.90  E-value=19  Score=14.46  Aligned_cols=49  Identities=16%  Similarity=0.337  Sum_probs=25.9

Q ss_pred             HHHHCCEEEEE--CCEEE-----EECCCEEEEEEEEEEECCCCCCCEEEEEEEEEE
Q ss_conf             99829819996--21489-----973631799942798268998760678679999
Q gi|254780954|r   41 TLIVGKKIAVK--GGIKI-----HILPFPSVFFKDIRIDQKEDGSFESKIEGLSMR   89 (380)
Q Consensus        41 s~~~g~~v~i~--G~i~~-----~l~P~p~i~~~~v~i~~~~~~~~~~~~~~~~v~   89 (380)
                      +...|++++++  .+..+     +.-++.-+.++++++.+++..+.+.+++++.++
T Consensus         7 k~L~g~~vtVELKN~~~i~G~L~svD~~mNi~L~nv~~~~~~~~ph~~~~~~~fIR   62 (81)
T cd01725           7 KTLVGKEVTVELKNDLSIRGTLHSVDQYLNIKLTNISVTDPEKYPHMLSVKNCFIR   62 (81)
T ss_pred             HHHCCCEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCEEEEE
T ss_conf             88279879999769949999996437221818876799788887526314259995


No 75 
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=36.81  E-value=23  Score=13.90  Aligned_cols=28  Identities=25%  Similarity=0.341  Sum_probs=17.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9588999999999999999998855208
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFID   28 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d   28 (380)
                      |-||+++++.++++.+++..+++-..+.
T Consensus        13 ~~rrl~~~ll~lv~~~~a~~l~~dr~i~   40 (235)
T COG2949          13 MFRRLFRILLVLVGALLATVLIADRWIS   40 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999878877


No 76 
>pfam09889 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=36.63  E-value=24  Score=13.88  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988552
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      |+|.-+++.++++++++..+++++|
T Consensus        35 ~~~~q~i~f~i~il~i~v~~~~~ff   59 (59)
T pfam09889        35 MRKSQQILFGIFILFLAVYAVLPFF   59 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999999999998139


No 77 
>TIGR00304 TIGR00304 conserved hypothetical protein TIGR00304; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices..
Probab=35.26  E-value=25  Score=13.75  Aligned_cols=61  Identities=25%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH-----HHHCCEEEEECCEEEEECCCEE
Q ss_conf             95889999999999999999988552085--887899999999-----9829819996214899736317
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQAT-----LIVGKKIAVKGGIKIHILPFPS   63 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s-----~~~g~~v~i~G~i~~~l~P~p~   63 (380)
                      ||+.+++.+|+.++++.+....+..-+.-  +.+|.|=.+++|     ....++|...|  =+=+.|.|=
T Consensus         1 ~~~~i~I~lG~~li~~G~~~~~lg~~l~~~~e~~reyerrrisE~~~~~k~~~~V~~~G--vV~IGPiPI   68 (93)
T TIGR00304         1 ILSEILILLGIILIVIGFLLVFLGLALEAESEDEREYERRRISEKRKSDKDKEEVKYGG--VVMIGPIPI   68 (93)
T ss_pred             CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECC--EEEECCCCE
T ss_conf             98640034418999999999998654313542123454320246877677410310146--587789054


No 78 
>PRK12438 hypothetical protein; Provisional
Probab=34.86  E-value=25  Score=13.71  Aligned_cols=27  Identities=15%  Similarity=-0.031  Sum_probs=16.7

Q ss_pred             HHHHHHH-----CCHH---HHHHHHHHHHH---HHHCC
Q ss_conf             9988552-----0858---87899999999---98298
Q gi|254780954|r   20 AFTVPLF-----IDWT---DFREDFERQAT---LIVGK   46 (380)
Q Consensus        20 ~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~   46 (380)
                      ..+.|.+     |.||   .=+++|++-+.   +++|.
T Consensus       301 g~i~P~~vQ~f~V~PNe~~~E~pYI~rNI~aTR~AygL  338 (979)
T PRK12438        301 GGLWPLLMEQFSVRPNAADVERPYIQRNIEATREAYRI  338 (979)
T ss_pred             HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             88888653577977774554556999999999997399


No 79 
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=34.40  E-value=26  Score=13.67  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEEEECCE
Q ss_conf             588999999999999999998855208588789999999--99829819996214
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIAVKGGI   54 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~i~G~i   54 (380)
                      ||.++..+..++++.++..++.|.++      .-|.+.+  .++-|--+..+|.+
T Consensus         1 mk~l~~al~~~~~~~vl~G~~YPl~v------tgiaq~~fp~qAnGSli~~~g~v   49 (188)
T pfam02669         1 IRNLVPALRSTALLWIITGLVYPLIV------TVIGQLVFPYQANGSLITDSGQV   49 (188)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEECCEE
T ss_conf             91589999999999999999999999------99997756355886768389999


No 80 
>pfam04415 DUF515 Protein of unknown function (DUF515). Family of hypothetical Archaeal proteins.
Probab=33.94  E-value=26  Score=13.62  Aligned_cols=31  Identities=23%  Similarity=0.508  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             8899999999999999999885520858878
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLFIDWTDFR   33 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k   33 (380)
                      ||++++..++.+++++..++..+++-.-.++
T Consensus        30 ~riiIga~il~iIIl~~~~~~Y~~~~~~~~q   60 (416)
T pfam04415        30 KRLIIGALVLSVIILLLVFAIYYYIENKAYQ   60 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4100689999999999999999998727789


No 81 
>PRK12789 flgI flagellar basal body P-ring protein; Reviewed
Probab=33.71  E-value=26  Score=13.60  Aligned_cols=15  Identities=27%  Similarity=0.529  Sum_probs=10.1

Q ss_pred             CHHHHHHHHHHHHHH
Q ss_conf             958899999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSV   15 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl   15 (380)
                      ||||+++++...+.+
T Consensus         1 m~~~~~~~~~~~l~~   15 (367)
T PRK12789          1 MIRRLLLAVLLALLA   15 (367)
T ss_pred             CHHHHHHHHHHHHHH
T ss_conf             908999999999985


No 82 
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=33.63  E-value=26  Score=13.59  Aligned_cols=10  Identities=10%  Similarity=0.182  Sum_probs=3.8

Q ss_pred             HHHHHHHHHH
Q ss_conf             5889999999
Q gi|254780954|r    2 LRRVLIGLGF   11 (380)
Q Consensus         2 mk~ll~~~~~   11 (380)
                      ||+..+.+.+
T Consensus         1 mK~~~ia~~~   10 (128)
T COG3111           1 MKKQAIAALI   10 (128)
T ss_pred             CCHHHHHHHH
T ss_conf             9217999999


No 83 
>PRK10588 hypothetical protein; Provisional
Probab=33.55  E-value=26  Score=13.58  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             958899999999999999999885520858878999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDF   36 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i   36 (380)
                      |.|+.+..+..++.+    ..+.-.++||++|-..+
T Consensus        12 ~dK~plRaLSlilA~----~~a~~v~wdP~~fA~~~   43 (97)
T PRK10588         12 MDKRPLRALSLVMAL----LLAGCMFWDPSRFAAKT   43 (97)
T ss_pred             HHCCHHHHHHHHHHH----HHHHHHHCCHHHHHHHH
T ss_conf             851409999999999----99999971899998760


No 84 
>COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=33.37  E-value=27  Score=13.56  Aligned_cols=50  Identities=12%  Similarity=-0.022  Sum_probs=28.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH--------------HCC----H---HHHHHHHHHHHHHHHCCEEEE
Q ss_conf             9588999999999999999998855--------------208----5---887899999999982981999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPL--------------FID----W---TDFREDFERQATLIVGKKIAV   50 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~--------------~~d----~---~~~k~~i~~~~s~~~g~~v~i   50 (380)
                      ||||.++..+.+.++++++....-.              -+.    .   ...-..+++.+++.+|.+|..
T Consensus         1 m~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~gi~p~e~~~~~~~~~~pl~~~L~~~lG~~V~~   71 (299)
T COG3221           1 MKKKKLLLASAAAVLALAGCCGSSESDAPAAEDPKELRVGIVPTENPTNLIPAWAPLADYLEKELGIPVEF   71 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             94278899999999999863257745432226875359997688886878876566998988986995435


No 85 
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=32.70  E-value=27  Score=13.50  Aligned_cols=50  Identities=16%  Similarity=0.130  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHCCHHHHH-HHHHHHHHHHHCCEEEEE
Q ss_conf             5889999999999999999988-----5520858878-999999999829819996
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV-----PLFIDWTDFR-EDFERQATLIVGKKIAVK   51 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~-----~~~~d~~~~k-~~i~~~~s~~~g~~v~i~   51 (380)
                      -||+|.++.....+.+.+....     ..+++|..|- +.+.++-++.+|.+|++.
T Consensus         5 ~~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Yi~p~~i~~FeketGikV~~~   60 (370)
T PRK10682          5 NKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYD   60 (370)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE
T ss_conf             78899999999999985205664279799981676579779999999979889999


No 86 
>PRK01742 tolB translocation protein TolB; Provisional
Probab=32.04  E-value=28  Score=13.43  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=14.2

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~   19 (380)
                      ||||++..+..++.++..+
T Consensus         3 m~~~~~~~~~~l~~~~~~~   21 (430)
T PRK01742          3 LLKRLVSVFAVLFAVISNA   21 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             6999999999999998778


No 87 
>PRK01741 cell division protein ZipA; Provisional
Probab=31.49  E-value=29  Score=13.38  Aligned_cols=16  Identities=50%  Similarity=0.613  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVL   17 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~   17 (380)
                      +|-+|+++|+++|+++
T Consensus         3 LrlILIIvGaIAI~AL   18 (342)
T PRK01741          3 LNTILIILGILALVAL   18 (342)
T ss_pred             CEEHHHHHHHHHHHHH
T ss_conf             1254999999999999


No 88 
>COG4086 Predicted secreted protein [Function unknown]
Probab=30.76  E-value=29  Score=13.30  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEC
Q ss_conf             588999999999999999998855208588789999999998298199962
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKG   52 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G   52 (380)
                      ||++++..+++.+++++.++..+++         ....+...+|+++.--|
T Consensus         1 m~k~~~~~~il~~i~il~lV~a~~~---------~v~~~d~t~g~~~vtlG   42 (299)
T COG4086           1 MKKVRIEITILVVIAILLLVAAAYP---------EVSLADATVGRPIVTLG   42 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCH---------HHHCCCCCCCCEEEEEC
T ss_conf             9237888899999999985132203---------45402232045158847


No 89 
>TIGR01655 yxeA_fam conserved hypothetical protein; InterPro: IPR006542   These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members..
Probab=30.15  E-value=30  Score=13.24  Aligned_cols=19  Identities=32%  Similarity=0.567  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGA   20 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~   20 (380)
                      ||+.+.+|.++.+.++++.
T Consensus         1 MKk~~~~Lla~i~~~~i~~   19 (121)
T TIGR01655         1 MKKVLAGLLALIVVIIIVG   19 (121)
T ss_pred             CHHHHHHHHHHHHHHHHHH
T ss_conf             9355688999999999988


No 90 
>PRK10527 hypothetical protein; Provisional
Probab=30.05  E-value=30  Score=13.23  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=11.2

Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             588999-999999999999998855
Q gi|254780954|r    2 LRRVLI-GLGFLFSVVLVGAFTVPL   25 (380)
Q Consensus         2 mk~ll~-~~~~~lvl~~~~~~~~~~   25 (380)
                      |||.++ ++|.+.+.+.+..+.+|.
T Consensus         1 mkR~l~~~lG~~~v~LG~iGi~LP~   25 (125)
T PRK10527          1 MQRIILIIIGWLAVVLGTLGVVLPL   25 (125)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9379999999999999999883778


No 91 
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=29.83  E-value=15  Score=15.04  Aligned_cols=17  Identities=24%  Similarity=0.514  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999988
Q gi|254780954|r    7 IGLGFLFSVVLVGAFTV   23 (380)
Q Consensus         7 ~~~~~~lvl~~~~~~~~   23 (380)
                      ++++++++++++++++.
T Consensus        22 Iii~vvvlll~~gG~~~   38 (180)
T PRK08455         22 IIIGVVVLLLLIGGVIA   38 (180)
T ss_pred             EEHHHHHHHHHHHHHHH
T ss_conf             34999999999999999


No 92 
>TIGR00859 ENaC sodium channel transporter; InterPro: IPR004724   The epithelial Na+ channel (ENaC) proteins consist of sodium channels from animals and has no recognizable homologues in other eukaryotes or bacteria. The vertebrate ENaC proteins from epithelial cells cluster tightly together on the phylogenetic tree: voltage-insensitive ENaC homologues are also found in the brain. Eleven sequenced Caenorhabditis elegans proteins, including the degenerins (IPR004726 from INTERPRO), are distantly related to the vertebrate proteins as well as to each other.    At least some of the proteins in this group form part of a mechano-transducing complex for touch sensitivity. Others include the acid-sensing ion channels, ASIC1-3 that are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. Mammalian ENaC is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, have been shown to assemble to form the highly Na+-selective channel. ; GO: 0015280 amiloride-sensitive sodium channel activity, 0006814 sodium ion transport, 0016021 integral to membrane.
Probab=28.75  E-value=32  Score=13.09  Aligned_cols=51  Identities=24%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEE-EEE--CCCEEEEEEE
Q ss_conf             588999999999999999998855208588789999999998298199962148-997--3631799942
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIK-IHI--LPFPSVFFKD   68 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~-~~l--~P~p~i~~~~   68 (380)
                      |||.+|++..++.+.++.              =+....+...+-++|.+.  |+ +.+  +++|.||+=+
T Consensus        30 ~kr~~W~~l~L~~~~l~~--------------WQ~g~L~~~Y~sypVs~~--l~~~~s~~L~FPAVT~Cn   83 (632)
T TIGR00859        30 LKRALWALLTLLALALLL--------------WQFGLLVRTYFSYPVSVS--LSEVNSDKLTFPAVTLCN   83 (632)
T ss_pred             HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHEECCEEEE--EEEEECCCCCCCCEEEEC
T ss_conf             388999999999999999--------------999998732000432567--742202114787236427


No 93 
>PRK03598 hypothetical protein; Provisional
Probab=28.16  E-value=33  Score=13.03  Aligned_cols=44  Identities=9%  Similarity=0.217  Sum_probs=24.3

Q ss_pred             CCEEEEECCEEE---EECCCEEEEEEEEEEECCC---CCCCEEEEEEEEE
Q ss_conf             981999621489---9736317999427982689---9876067867999
Q gi|254780954|r   45 GKKIAVKGGIKI---HILPFPSVFFKDIRIDQKE---DGSFESKIEGLSM   88 (380)
Q Consensus        45 g~~v~i~G~i~~---~l~P~p~i~~~~v~i~~~~---~~~~~~~~~~~~v   88 (380)
                      ..++++.|.+..   .+-|..+=.+..+.+.+.+   .++.+++++.-.+
T Consensus        30 ~~~~~~~g~ve~~~V~vs~~v~G~V~~v~V~eGd~Vk~Gq~La~LD~~~~   79 (331)
T PRK03598         30 DNGLTLYGNVDIRTVNLSFRVGGRLASLAVDEGDAVKAGQVLGELDHAPY   79 (331)
T ss_pred             CCCEEEEEEEEEEEEEECCCCCEEEEEEECCCCCEECCCCEEEEECCHHH
T ss_conf             88603579999999999132775999998689798779988999880899


No 94 
>PRK04335 cell division protein ZipA; Provisional
Probab=27.84  E-value=33  Score=13.00  Aligned_cols=16  Identities=50%  Similarity=0.497  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVL   17 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~   17 (380)
                      +|-+|+++|+++|+++
T Consensus         4 LrlILIIvGaIAIiAL   19 (319)
T PRK04335          4 LRFVLIVVGALAIAAL   19 (319)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             4029999999999999


No 95 
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=27.62  E-value=33  Score=12.97  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCE
Q ss_conf             889999999999-999999988552085887899999999982981
Q gi|254780954|r    3 RRVLIGLGFLFS-VVLVGAFTVPLFIDWTDFREDFERQATLIVGKK   47 (380)
Q Consensus         3 k~ll~~~~~~lv-l~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~   47 (380)
                      ||+++.+..+.+ ++.+++.++|++           +..=+.+|..
T Consensus        10 ~~~~~~L~~v~v~Mfgf~fA~VPLY-----------~~fC~vTG~~   44 (186)
T PRK05089         10 RKLVFKLLLVVVGMFGFGFALVPLY-----------DVFCEVTGIN   44 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHCCC
T ss_conf             8999999999999998887365789-----------9999982888


No 96 
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=27.45  E-value=34  Score=12.96  Aligned_cols=29  Identities=21%  Similarity=0.122  Sum_probs=18.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             95889999999999999999988552085
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW   29 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~   29 (380)
                      .|||+++++..+++++++++....+++--
T Consensus         8 v~~kvl~~~~~i~aal~~~~~~~~~~il~   36 (295)
T COG3322           8 VSKKVLIILLAIFAALTAALGGASYNILL   36 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89899999999999999999999999999


No 97 
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=27.43  E-value=34  Score=12.95  Aligned_cols=78  Identities=13%  Similarity=0.217  Sum_probs=39.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCC---CC
Q ss_conf             958899999999999999999885520858878999999999829819996214899736317999427982689---98
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKE---DG   77 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~---~~   77 (380)
                      |.||++.++..++++++ +++++.+  -|..|+..       -.=.+-.|.|++ +.+-|..+=.+..|.+.+.+   .+
T Consensus         4 ~~rk~~r~~i~i~~v~~-~~~~~~~--~w~~~~~~-------p~TddAyV~a~i-v~Vsp~VsG~V~eV~V~dnq~VkkG   72 (310)
T PRK10559          4 LTRKISRTAITVVLVIL-AFIAIFN--AWVYYTES-------PWTRDARFSADV-VAIAPDVSGLITQVNVHDNQLVKKG   72 (310)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHCCC-------CCCCCEEEEEEE-EEEECCCCEEEEEEECCCCCEECCC
T ss_conf             88999999999999999-9999999--99862688-------516773898579-9993667469999991794987699


Q ss_pred             CCEEEEEEEEEE
Q ss_conf             760678679999
Q gi|254780954|r   78 SFESKIEGLSMR   89 (380)
Q Consensus        78 ~~~~~~~~~~v~   89 (380)
                      +.++++|.-...
T Consensus        73 dvL~~ID~~~y~   84 (310)
T PRK10559         73 QVLFTIDQPRYQ   84 (310)
T ss_pred             CEEEEECCHHHH
T ss_conf             889998761799


No 98 
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=26.76  E-value=35  Score=12.88  Aligned_cols=102  Identities=13%  Similarity=0.145  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCEEEEECCEEEE-ECCCEEEEEEEEEEECCCCCC
Q ss_conf             8899999999999999999885520858---878999999999829819996214899-736317999427982689987
Q gi|254780954|r    3 RRVLIGLGFLFSVVLVGAFTVPLFIDWT---DFREDFERQATLIVGKKIAVKGGIKIH-ILPFPSVFFKDIRIDQKEDGS   78 (380)
Q Consensus         3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~---~~k~~i~~~~s~~~g~~v~i~G~i~~~-l~P~p~i~~~~v~i~~~~~~~   78 (380)
                      +|+.+++++++.+.++..+++.- ++.|   -|-|.--.+.+...|..+++.|=+.-. +--.|.-.-=.+.+.+  . .
T Consensus         7 ~Rl~~il~~~a~l~~a~~l~Lya-l~~ni~~fy~Psel~~~~~~~G~rlR~GGlV~~GSv~R~~~~~~v~F~vtD--~-~   82 (153)
T COG2332           7 KRLWIILAGLAGLALAVGLVLYA-LRSNIDYFYTPSELLEGKVETGQRLRLGGLVEAGSVQRDPGSLKVSFVVTD--G-N   82 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEECHHHHCCCCCCCCCEEEEEEEEEECEEEECCCCCEEEEEEEC--C-C
T ss_conf             14899999999999999998764-203750898779962564567858887006862458736997379999945--8-7


Q ss_pred             CEEEEEEEEEEEE-HH-HHHC-CCCCCCEEEEECCEEE
Q ss_conf             6067867999987-02-6524-9710113899644899
Q gi|254780954|r   79 FESKIEGLSMRAE-FL-PLLS-GEIRVFDMYIDQPHLN  113 (380)
Q Consensus        79 ~~~~~~~~~v~i~-l~-~Ll~-~~~~i~~i~L~~p~i~  113 (380)
                           ..+.|... .+ .||+ |+-.+.+=.+.++.+.
T Consensus        83 -----~~v~V~Y~GiLPDLFREGQgVVa~G~~~~~~~f  115 (153)
T COG2332          83 -----KSVTVSYEGILPDLFREGQGVVAEGQLQGGGVF  115 (153)
T ss_pred             -----CEEEEEEECCCCHHHHCCCEEEEEEEECCCCEE
T ss_conf             -----148999843583566168838999886689778


No 99 
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=26.24  E-value=35  Score=12.82  Aligned_cols=20  Identities=30%  Similarity=0.634  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             95889999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGA   20 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~   20 (380)
                      |||+.|+.+..++-+.+.+.
T Consensus         1 ~~~~~~~~l~~~f~~~~~a~   20 (104)
T PRK10287          1 MFKKGLLALALVFSLPVFAA   20 (104)
T ss_pred             CCHHHHHHHHHHHHCHHHHC
T ss_conf             92447999999995655415


No 100
>pfam11309 DUF3112 Protein of unknown function (DUF3112). This eukaryotic family of proteins has no known function.
Probab=25.93  E-value=36  Score=12.79  Aligned_cols=39  Identities=10%  Similarity=0.108  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             58899999999999-9999998855208588789999999
Q gi|254780954|r    2 LRRVLIGLGFLFSV-VLVGAFTVPLFIDWTDFREDFERQA   40 (380)
Q Consensus         2 mk~ll~~~~~~lvl-~~~~~~~~~~~~d~~~~k~~i~~~~   40 (380)
                      |+-+...+++++++ ++.+.+..-++.|++.++..-.-|.
T Consensus        13 ~~~ly~~v~~~lim~vit~~v~~~ytL~~~~~~~~r~~~~   52 (160)
T pfam11309        13 MILLYLLVAGVLIMTVITSAVPYLYTLSEHTYRQDRDVVL   52 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHH
T ss_conf             9999999999999999998655425668999999899999


No 101
>PRK00523 hypothetical protein; Provisional
Probab=25.76  E-value=36  Score=12.77  Aligned_cols=32  Identities=22%  Similarity=0.537  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999999885520858878999999999
Q gi|254780954|r    5 VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL   42 (380)
Q Consensus         5 ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~   42 (380)
                      +.+++++++.+++  ..++.+|+.    |.++++++.+
T Consensus         5 l~iglgiil~li~--G~~~Gff~a----rk~~~k~lk~   36 (73)
T PRK00523          5 LILGLGIPLSLIV--GGIIGYFVS----KKYFKKQLRE   36 (73)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHH
T ss_conf             7659989999999--999999999----9999998866


No 102
>pfam03866 HAP Hydrophobic abundant protein (HAP). Expression of HAP is thought to be developmentally regulated and possibly involved in spherule cell wall formation.
Probab=25.68  E-value=36  Score=12.76  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=11.3

Q ss_pred             CHHHHHHHHHHHHHHHH
Q ss_conf             95889999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVL   17 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~   17 (380)
                      |||.+|+.++...++.+
T Consensus         1 mmkyifialc~faival   17 (167)
T pfam03866         1 MMKYIFIALCFFAIVAL   17 (167)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             91358999999999999


No 103
>pfam07234 DUF1426 Protein of unknown function (DUF1426). This family consists of several Banana bunchy top virus proteins of around 120 residues in length. One member is annotated as a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=25.49  E-value=37  Score=12.74  Aligned_cols=35  Identities=11%  Similarity=0.245  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             99999999999999998855208588789999999
Q gi|254780954|r    6 LIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA   40 (380)
Q Consensus         6 l~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~   40 (380)
                      ++.+|.+++.+-+.++++.+++.-..|-..+.+.+
T Consensus        15 FLFf~AIFiAItIlYILL~lLfEvPkYIK~~Vryl   49 (117)
T pfam07234        15 FLFFGAIFIAITILYILLVLLFEVPKYIKGLVRYL   49 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999996089999999999


No 104
>PRK01844 hypothetical protein; Provisional
Probab=24.54  E-value=38  Score=12.63  Aligned_cols=20  Identities=15%  Similarity=0.179  Sum_probs=11.1

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999885520858878999999999
Q gi|254780954|r   19 GAFTVPLFIDWTDFREDFERQATL   42 (380)
Q Consensus        19 ~~~~~~~~~d~~~~k~~i~~~~s~   42 (380)
                      +.+++.+|+    -|.++++++.+
T Consensus        16 ~G~~~Gffi----aRk~m~~ylk~   35 (72)
T PRK01844         16 AGVALGFFI----ARKYMMNYLQK   35 (72)
T ss_pred             HHHHHHHHH----HHHHHHHHHHH
T ss_conf             999999999----99999998866


No 105
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=24.47  E-value=38  Score=12.62  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=14.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             958899999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAF   21 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~   21 (380)
                      |+|++++++..++.++.+++.
T Consensus         1 mkkK~i~~~~~~~svl~LaaC   21 (285)
T PRK03002          1 MRGKHIFIITALISILMLSAC   21 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
T ss_conf             960189999999999999984


No 106
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.09  E-value=15  Score=15.06  Aligned_cols=20  Identities=20%  Similarity=0.032  Sum_probs=6.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999988552
Q gi|254780954|r    7 IGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         7 ~~~~~~lvl~~~~~~~~~~~   26 (380)
                      +++++++++++++..+..+|
T Consensus        27 iIii~~~vlll~gggg~~f~   46 (167)
T PRK12785         27 IIIAAAAVLLLGGGGGGWFF   46 (167)
T ss_pred             EEEHHHHHHHHHHHHHHEEE
T ss_conf             76199999999731140146


No 107
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.56  E-value=42  Score=12.40  Aligned_cols=41  Identities=15%  Similarity=0.090  Sum_probs=21.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHH
Q ss_conf             9588999999999999999998855208588----789999999998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTD----FREDFERQATLI   43 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~----~k~~i~~~~s~~   43 (380)
                      ||||..+.+..+.+++  ++.++|+++..+.    --.+.|..+++.
T Consensus         1 m~kk~~~~ll~i~~i~--~l~li~~~~~~~ge~gGaD~~Ae~~I~ei   45 (97)
T COG1930           1 MSKKHMLNLLAIGIIL--ALPLIPFSFVTDGEFGGADGEAEEVITEI   45 (97)
T ss_pred             CCHHHHHHHHHHHHHH--HHHHHHHEECCCCCCCCCCCHHHHHHHHH
T ss_conf             9357999999999999--99888841124422158762566789874


No 108
>pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=22.46  E-value=42  Score=12.39  Aligned_cols=38  Identities=16%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             588999999999999999998855208588789999999998
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI   43 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~   43 (380)
                      |||.++..+.+++.  +.+++.+  -+-+..|.+|++.+...
T Consensus         1 Mkk~~l~~~l~lla--~~alAA~--~sCE~lk~eI~~KI~~n   38 (75)
T pfam06649         1 MKRLLLAVALLLLA--ASALAAP--KSCEELKAEIEAKIQAN   38 (75)
T ss_pred             CCHHHHHHHHHHHH--HHHHHCC--CCHHHHHHHHHHHHHHC
T ss_conf             92469999999971--3453155--88899999999999976


No 109
>pfam05842 Euplotes_phero Euplotes octocarinatus mating pheromone protein. This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate Euplotes octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells.
Probab=22.42  E-value=42  Score=12.38  Aligned_cols=17  Identities=18%  Similarity=0.335  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             58899999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLV   18 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~   18 (380)
                      ||-+++||+|+.|.-.+
T Consensus         1 MKAIFIILAILMVTQAF   17 (153)
T pfam05842         1 MKAIFIILAILMVTQAF   17 (153)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             91189999999999999


No 110
>TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941   Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown  to be evolutionary related to enolase.   Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex.
Probab=22.33  E-value=42  Score=12.37  Aligned_cols=36  Identities=14%  Similarity=0.179  Sum_probs=15.3

Q ss_pred             CEEEEEE-CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCE
Q ss_conf             4899998-88888055555556766552365348972878
Q gi|254780954|r  110 PHLNFYL-SSKGVSNWFQRKSTMDMIHNVILEKIHVKGGR  148 (380)
Q Consensus       110 p~i~l~~-~~~G~~n~~~~~~~~~~~~~~~l~~i~i~~g~  148 (380)
                      |.+.++. ..+|..--+..|+-.+.+.+   +-+.++|+.
T Consensus        16 PTVev~V~l~~G~~G~A~VPSGASTG~~---EAlELRD~D   52 (430)
T TIGR01060        16 PTVEVEVILEDGTFGRAAVPSGASTGER---EALELRDGD   52 (430)
T ss_pred             CEEEEEEEECCCCEEEEECCCCCCCCCC---EEEEEECCC
T ss_conf             7289999976897688853678764222---045564557


No 111
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03  E-value=43  Score=12.34  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             999999999885520858878999999999
Q gi|254780954|r   13 FSVVLVGAFTVPLFIDWTDFREDFERQATL   42 (380)
Q Consensus        13 lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~   42 (380)
                      .++.+++.+++.+|+.    |.++++++.+
T Consensus        10 ivl~ll~G~~~G~fia----rk~~~k~lk~   35 (71)
T COG3763          10 IVLALLAGLIGGFFIA----RKQMKKQLKD   35 (71)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_conf             9999999999999999----9999999744


No 112
>PRK13697 cytochrome c6; Provisional
Probab=21.81  E-value=43  Score=12.31  Aligned_cols=18  Identities=6%  Similarity=0.181  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             588999999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~   19 (380)
                      |||++..+...+++++++
T Consensus         1 Mk~l~~~~l~~~~~~~~~   18 (111)
T PRK13697          1 MKKILKLVLLTLLLLTFA   18 (111)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             978999999999999998


No 113
>PRK02889 tolB translocation protein TolB; Provisional
Probab=21.61  E-value=44  Score=12.28  Aligned_cols=19  Identities=5%  Similarity=0.148  Sum_probs=14.0

Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~   19 (380)
                      ||+||...+.+.++|++++
T Consensus         3 ~~~~l~~~~~~~~~l~~~~   21 (430)
T PRK02889          3 LMTKLGLRALVASCLIAAG   21 (430)
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             7998999999999998621


No 114
>pfam09911 DUF2140 Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.17  E-value=19  Score=14.45  Aligned_cols=27  Identities=30%  Similarity=0.247  Sum_probs=8.7

Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             001475432355444335675566424
Q gi|254780954|r  325 MHDLNETDFFEEEEKKNKNDDLKKDDI  351 (380)
Q Consensus       325 ~~d~n~~~~~~~~~~~~~~~~~~~~~~  351 (380)
                      .+++++-...+.-.-+.++.++..+++
T Consensus       154 ~l~L~~~~~~~g~~~kA~~iDL~~D~i  180 (187)
T pfam09911       154 YLRLSEIKLKNGLYVKAKKIDLVNDEI  180 (187)
T ss_pred             EEEHHHCCCCCCCEEEEEEEECCCCEE
T ss_conf             999666646799389999960688869


No 115
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=20.89  E-value=45  Score=12.19  Aligned_cols=16  Identities=31%  Similarity=0.312  Sum_probs=6.6

Q ss_pred             EEEEEEHHHHHCCCCC
Q ss_conf             9999870265249710
Q gi|254780954|r   86 LSMRAEFLPLLSGEIR  101 (380)
Q Consensus        86 ~~v~i~l~~Ll~~~~~  101 (380)
                      +.=.+-+.|++-|++.
T Consensus        93 l~G~iv~~pi~~GEPV  108 (276)
T COG3745          93 LAGRIVRVPIGAGEPV  108 (276)
T ss_pred             CCCCEEEECCCCCCCC
T ss_conf             2682586213589853


No 116
>PRK02710 plastocyanin; Provisional
Probab=20.61  E-value=46  Score=12.16  Aligned_cols=54  Identities=15%  Similarity=0.023  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECC-EEEEECCC-EEEEEEEE
Q ss_conf             95889999999999999999988552085887899999999982981999621-48997363-17999427
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGG-IKIHILPF-PSVFFKDI   69 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~-i~~~l~P~-p~i~~~~v   69 (380)
                      ||||+-..++.++++++..++.....               .+--.+|.+.+| =.+.+-|. .+|..+|.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~a---------------~A~~~~v~m~~d~g~m~FsP~~ltI~~GDT   56 (119)
T PRK02710          1 MAKRLRSIAAALVAVVSSFGLGVSSA---------------SAATVEVKMGSDAGMLAFEPSTLTIKAGDT   56 (119)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCC---------------CCCEEEEEECCCCCCEEEECCEEEECCCCE
T ss_conf             90688999999999999998125702---------------025289997578852798489889899999


No 117
>PRK12450 foldase protein PrsA; Reviewed
Probab=20.46  E-value=46  Score=12.14  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=15.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q ss_conf             958899999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAF   21 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~   21 (380)
                      +||++++++.+++.++.+++-
T Consensus         3 ~mKK~~~~~~~~~svl~LaAC   23 (309)
T PRK12450          3 QMNKLITGVVTLATVVTLSAC   23 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             799999999999999999860


No 118
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=20.31  E-value=20  Score=14.35  Aligned_cols=25  Identities=16%  Similarity=0.493  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5889999999999999999988552
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLF   26 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~   26 (380)
                      |||.++++.++|+.+++.+.+...+
T Consensus         1 MKK~f~~Ivill~g~~i~g~i~~~~   25 (288)
T COG4814           1 MKKVFFSIVILLAGALILGWIIGIF   25 (288)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHEEEE
T ss_conf             9517876069999999976521355


No 119
>PRK10386 curli assembly protein CsgE; Provisional
Probab=20.29  E-value=47  Score=12.12  Aligned_cols=71  Identities=13%  Similarity=0.088  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------HHHCCH------HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEE
Q ss_conf             5889999999999999999988--------552085------88789999999998298199962148997363179994
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTV--------PLFIDW------TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFK   67 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~--------~~~~d~------~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~   67 (380)
                      |||.+...+..++++.++-+..        .+++|-      .+|--.+.......++-+++|.-....++....+|..+
T Consensus         1 m~r~~~~~~~~~~l~~~~~~~~a~~E~Ei~Gli~DrTiSr~GhdFY~~Fs~~~rs~~~~NLtVkErp~ar~GS~itv~~~   80 (131)
T PRK10386          1 MKRYLRWIVAAELLFAAGNLHAAEVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESRYTGNLTINERPSARWGSWITITVN   80 (131)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEC
T ss_conf             91799999999999974773133544214747761325551168999999998545898568975426766668999984


Q ss_pred             EEEEE
Q ss_conf             27982
Q gi|254780954|r   68 DIRID   72 (380)
Q Consensus        68 ~v~i~   72 (380)
                      +=.|.
T Consensus        81 ~kvIY   85 (131)
T PRK10386         81 QDVIY   85 (131)
T ss_pred             CEEEE
T ss_conf             76889


No 120
>pfam00820 Lipoprotein_1 Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.
Probab=20.23  E-value=41  Score=12.46  Aligned_cols=18  Identities=17%  Similarity=0.748  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             588999999999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVG   19 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~   19 (380)
                      ||+.|+++|.++.+|.+.
T Consensus         1 mkkyllgi~LilaliaCk   18 (273)
T pfam00820         1 MKKYLLGIGLILALIACK   18 (273)
T ss_pred             CCEEEHHHHHHHHHHHHH
T ss_conf             944311589999998760


Done!