Query gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 380 No_of_seqs 168 out of 631 Neff 9.3 Searched_HMMs 39220 Date Mon May 30 02:38:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK10833 putative assembly pro 100.0 0 0 296.5 32.3 287 2-329 1-296 (617) 2 pfam05170 AsmA AsmA family. Th 100.0 1.1E-40 2.8E-45 260.0 27.9 170 2-171 1-187 (537) 3 COG2982 AsmA Uncharacterized p 100.0 3.1E-34 7.9E-39 221.5 17.8 156 2-157 4-170 (648) 4 TIGR02099 TIGR02099 conserved 99.8 8.6E-17 2.2E-21 117.7 23.7 169 1-170 2-183 (1362) 5 COG3164 Predicted membrane pro 99.5 7.5E-13 1.9E-17 94.2 15.6 167 4-175 6-180 (1271) 6 TIGR03545 conserved hypothetic 99.3 7.9E-11 2E-15 82.2 10.7 108 13-122 10-118 (554) 7 COG2911 Uncharacterized protei 97.6 0.00054 1.4E-08 41.5 9.1 148 2-155 8-158 (1278) 8 pfam05359 DUF748 Domain of Unk 97.4 0.0064 1.6E-07 35.1 11.8 39 135-173 1-41 (150) 9 pfam08118 MDM31_MDM32 Yeast mi 96.8 0.031 8E-07 31.0 11.1 140 29-172 72-253 (503) 10 PRK10695 hypothetical protein; 95.8 0.11 2.9E-06 27.6 13.7 97 1-112 1-99 (876) 11 pfam01203 GSPII_N Bacterial ty 94.9 0.22 5.7E-06 25.9 11.1 81 2-103 1-82 (251) 12 COG4093 Uncharacterized protei 94.3 0.3 7.7E-06 25.1 15.2 99 3-110 14-115 (338) 13 TIGR03431 PhnD phosphonate ABC 93.0 0.29 7.3E-06 25.3 5.5 51 1-51 1-64 (288) 14 PRK10834 hypothetical protein; 83.1 1.8 4.7E-05 20.5 3.9 29 1-29 1-29 (239) 15 PRK11715 hypothetical protein; 82.1 2.9 7.5E-05 19.3 6.7 53 4-56 9-61 (427) 16 PHA00019 phage assembly protei 81.2 2.4 6.2E-05 19.7 4.0 53 1-55 1-55 (428) 17 KOG3448 consensus 80.5 1.2 3.2E-05 21.5 2.3 62 29-91 4-65 (96) 18 pfam07273 DUF1439 Protein of u 79.9 3.5 8.9E-05 18.8 8.9 61 2-73 1-64 (177) 19 PRK13150 cytochrome c-type bio 79.6 2.3 5.8E-05 19.9 3.4 52 3-54 7-66 (159) 20 PRK10598 hypothetical protein; 79.3 3.6 9.3E-05 18.7 6.7 65 2-74 1-66 (186) 21 pfam06123 CreD Inner membrane 79.0 3.7 9.5E-05 18.7 6.7 55 2-56 4-58 (430) 22 PRK13861 type IV secretion sys 78.5 2.1 5.3E-05 20.1 2.9 17 1-17 1-17 (293) 23 PRK13165 cytochrome c-type bio 77.7 2.8 7.2E-05 19.4 3.4 96 3-109 7-117 (161) 24 PRK10270 hypothetical protein; 75.0 3.5 9E-05 18.8 3.3 22 2-23 1-22 (340) 25 PRK00315 potassium-transportin 75.0 4.5 0.00011 18.2 3.8 47 1-53 1-49 (195) 26 PRK11622 putative ABC transpor 73.7 4.4 0.00011 18.2 3.5 49 1-49 1-71 (401) 27 TIGR02112 cyd_oper_ybgE cyd op 72.2 5.6 0.00014 17.6 3.8 33 1-37 8-40 (93) 28 PRK08262 hypothetical protein; 70.8 6 0.00015 17.4 3.7 51 1-51 3-60 (489) 29 PRK06770 hypothetical protein; 68.7 6.2 0.00016 17.3 3.4 21 2-22 1-21 (185) 30 PRK12696 flgH flagellar basal 67.4 3.1 7.9E-05 19.1 1.6 19 1-19 1-19 (238) 31 COG5009 MrcA Membrane carboxyp 66.3 7.5 0.00019 16.8 3.7 17 31-47 264-280 (797) 32 COG2156 KdpC K+-transporting A 66.2 7.6 0.00019 16.8 3.6 46 1-52 1-49 (190) 33 COG5294 Uncharacterized protei 65.7 3.3 8.5E-05 18.9 1.5 20 2-21 1-20 (113) 34 pfam03100 CcmE CcmE. CcmE is t 65.0 7.4 0.00019 16.9 3.1 48 3-55 6-60 (130) 35 PRK11627 hypothetical protein; 64.8 5.2 0.00013 17.8 2.3 19 1-19 1-19 (192) 36 PRK09379 membrane-bound transc 63.7 8.2 0.00021 16.6 3.2 25 1-25 1-25 (303) 37 PRK10604 sensor protein RstB; 63.4 8.6 0.00022 16.5 5.4 22 2-23 1-22 (433) 38 PRK02515 psbU photosystem II c 63.3 8.6 0.00022 16.5 4.4 50 2-51 1-68 (144) 39 TIGR00247 TIGR00247 conserved 61.7 9.2 0.00024 16.3 3.8 26 2-27 7-36 (373) 40 COG2832 Uncharacterized protei 61.3 6.5 0.00017 17.2 2.3 26 1-26 1-26 (119) 41 PRK13254 cytochrome c-type bio 60.5 8.5 0.00022 16.5 2.8 47 3-54 7-60 (149) 42 PRK09501 potD spermidine/putre 59.6 10 0.00026 16.1 4.3 50 2-51 1-57 (348) 43 pfam03699 UPF0182 Uncharacteri 59.5 10 0.00026 16.1 3.6 61 3-68 270-342 (771) 44 COG4509 Uncharacterized protei 58.1 11 0.00027 15.9 4.6 33 1-33 2-37 (244) 45 PRK00068 hypothetical protein; 56.0 12 0.00029 15.7 3.9 42 5-46 284-336 (978) 46 PRK11029 FtsH protease regulat 55.9 2 5.1E-05 20.2 -1.1 82 2-92 1-91 (334) 47 COG5353 Uncharacterized protei 55.7 7.4 0.00019 16.9 1.8 47 1-47 1-52 (161) 48 PRK05696 fliL flagellar basal 54.4 9.3 0.00024 16.3 2.2 24 3-26 16-39 (168) 49 pfam07423 DUF1510 Protein of u 53.1 12 0.00032 15.5 2.6 29 5-33 14-42 (214) 50 PRK13428 F0F1 ATP synthase sub 52.9 13 0.00033 15.4 4.4 42 30-71 387-428 (445) 51 PRK07021 fliL flagellar basal 52.8 10 0.00025 16.1 2.1 24 3-26 12-35 (159) 52 PRK10549 signal transduction h 51.1 14 0.00035 15.2 5.6 40 2-41 9-48 (467) 53 pfam02158 Neuregulin Neureguli 51.0 12 0.0003 15.7 2.2 43 2-44 6-49 (406) 54 PRK07018 flgA flagellar basal 50.6 14 0.00036 15.2 6.2 108 2-116 5-118 (236) 55 PRK04792 tolB translocation pr 48.8 14 0.00035 15.3 2.3 16 85-100 112-127 (450) 56 COG0687 PotD Spermidine/putres 48.1 16 0.0004 15.0 4.3 51 1-51 1-62 (363) 57 PRK13159 cytochrome c-type bio 47.2 16 0.00041 14.9 3.3 47 3-54 7-60 (156) 58 PRK07718 fliL flagellar basal 47.1 16 0.00041 14.9 2.7 22 1-22 1-22 (142) 59 COG4640 Predicted membrane pro 46.6 16 0.00042 14.8 4.2 37 6-42 55-91 (465) 60 PRK02693 apocytochrome f; Revi 44.4 17 0.00042 14.8 2.2 50 1-51 1-51 (312) 61 PRK13430 F0F1 ATP synthase sub 43.9 18 0.00046 14.6 4.8 42 30-71 213-254 (271) 62 PRK00888 ftsB cell division pr 43.4 18 0.00047 14.5 4.3 16 2-17 1-16 (105) 63 pfam05540 Serpulina_VSP Serpul 42.5 9.3 0.00024 16.3 0.6 36 2-37 1-44 (377) 64 COG1704 LemA Uncharacterized c 42.0 19 0.00049 14.4 4.4 26 2-27 1-26 (185) 65 PRK11633 hypothetical protein; 41.3 20 0.00051 14.3 3.5 23 8-30 8-30 (218) 66 PRK03757 hypothetical protein; 41.2 8.8 0.00022 16.4 0.3 29 2-30 1-30 (191) 67 pfam04076 BOF Bacterial OB fol 40.8 20 0.00052 14.3 3.2 14 2-15 1-14 (126) 68 COG3790 Predicted membrane pro 40.7 20 0.00052 14.3 3.3 32 1-36 12-43 (97) 69 pfam11947 DUF3464 Protein of u 38.6 16 0.00042 14.8 1.4 28 1-28 57-84 (149) 70 PRK11677 cytochrome d ubiquino 37.9 22 0.00057 14.0 5.3 39 2-42 1-40 (134) 71 COG1580 FliL Flagellar basal b 37.8 20 0.0005 14.4 1.7 22 2-23 14-35 (159) 72 TIGR03142 cytochro_ccmI cytoch 37.6 23 0.00058 14.0 2.7 22 5-26 1-22 (117) 73 PRK10002 outer membrane protei 37.3 13 0.00034 15.3 0.8 43 1-58 1-43 (362) 74 cd01725 LSm2 The eukaryotic Sm 36.9 19 0.00048 14.5 1.5 49 41-89 7-62 (81) 75 COG2949 SanA Uncharacterized m 36.8 23 0.0006 13.9 3.3 28 1-28 13-40 (235) 76 pfam09889 DUF2116 Uncharacteri 36.6 24 0.0006 13.9 3.5 25 2-26 35-59 (59) 77 TIGR00304 TIGR00304 conserved 35.3 25 0.00063 13.7 2.8 61 1-63 1-68 (93) 78 PRK12438 hypothetical protein; 34.9 25 0.00064 13.7 3.3 27 20-46 301-338 (979) 79 pfam02669 KdpC K+-transporting 34.4 26 0.00065 13.7 3.4 47 2-54 1-49 (188) 80 pfam04415 DUF515 Protein of un 33.9 26 0.00066 13.6 5.0 31 3-33 30-60 (416) 81 PRK12789 flgI flagellar basal 33.7 26 0.00067 13.6 2.4 15 1-15 1-15 (367) 82 COG3111 Periplasmic protein wi 33.6 26 0.00067 13.6 3.1 10 2-11 1-10 (128) 83 PRK10588 hypothetical protein; 33.6 26 0.00067 13.6 3.4 32 1-36 12-43 (97) 84 COG3221 PhnD ABC-type phosphat 33.4 27 0.00068 13.6 5.0 50 1-50 1-71 (299) 85 PRK10682 putrescine transporte 32.7 27 0.0007 13.5 4.4 50 2-51 5-60 (370) 86 PRK01742 tolB translocation pr 32.0 28 0.00071 13.4 2.7 19 1-19 3-21 (430) 87 PRK01741 cell division protein 31.5 29 0.00073 13.4 1.9 16 2-17 3-18 (342) 88 COG4086 Predicted secreted pro 30.8 29 0.00075 13.3 2.9 42 2-52 1-42 (299) 89 TIGR01655 yxeA_fam conserved h 30.1 30 0.00077 13.2 2.9 19 2-20 1-19 (121) 90 PRK10527 hypothetical protein; 30.0 30 0.00077 13.2 3.0 24 2-25 1-25 (125) 91 PRK08455 fliL flagellar basal 29.8 15 0.00038 15.0 0.0 17 7-23 22-38 (180) 92 TIGR00859 ENaC sodium channel 28.8 32 0.00081 13.1 5.9 51 2-68 30-83 (632) 93 PRK03598 hypothetical protein; 28.2 33 0.00083 13.0 6.6 44 45-88 30-79 (331) 94 PRK04335 cell division protein 27.8 33 0.00085 13.0 2.6 16 2-17 4-19 (319) 95 PRK05089 cytochrome C oxidase 27.6 33 0.00085 13.0 4.1 34 3-47 10-44 (186) 96 COG3322 Predicted periplasmic 27.5 34 0.00086 13.0 4.3 29 1-29 8-36 (295) 97 PRK10559 p-hydroxybenzoic acid 27.4 34 0.00086 13.0 6.7 78 1-89 4-84 (310) 98 COG2332 CcmE Cytochrome c-type 26.8 35 0.00088 12.9 3.2 102 3-113 7-115 (153) 99 PRK10287 thiosulfate:cyanide s 26.2 35 0.0009 12.8 1.7 20 1-20 1-20 (104) 100 pfam11309 DUF3112 Protein of u 25.9 36 0.00092 12.8 5.6 39 2-40 13-52 (160) 101 PRK00523 hypothetical protein; 25.8 36 0.00092 12.8 4.5 32 5-42 5-36 (73) 102 pfam03866 HAP Hydrophobic abun 25.7 36 0.00093 12.8 2.5 17 1-17 1-17 (167) 103 pfam07234 DUF1426 Protein of u 25.5 37 0.00093 12.7 4.6 35 6-40 15-49 (117) 104 PRK01844 hypothetical protein; 24.5 38 0.00097 12.6 4.8 20 19-42 16-35 (72) 105 PRK03002 prsA peptidylprolyl i 24.5 38 0.00098 12.6 2.8 21 1-21 1-21 (285) 106 PRK12785 fliL flagellar basal 24.1 15 0.00038 15.1 -0.8 20 7-26 27-46 (167) 107 COG1930 CbiN ABC-type cobalt t 22.6 42 0.0011 12.4 3.3 41 1-43 1-45 (97) 108 pfam06649 DUF1161 Protein of u 22.5 42 0.0011 12.4 3.2 38 2-43 1-38 (75) 109 pfam05842 Euplotes_phero Euplo 22.4 42 0.0011 12.4 1.5 17 2-18 1-17 (153) 110 TIGR01060 eno phosphopyruvate 22.3 42 0.0011 12.4 2.7 36 110-148 16-52 (430) 111 COG3763 Uncharacterized protei 22.0 43 0.0011 12.3 4.7 26 13-42 10-35 (71) 112 PRK13697 cytochrome c6; Provis 21.8 43 0.0011 12.3 3.6 18 2-19 1-18 (111) 113 PRK02889 tolB translocation pr 21.6 44 0.0011 12.3 1.8 19 1-19 3-21 (430) 114 pfam09911 DUF2140 Uncharacteri 21.2 19 0.00048 14.4 -0.8 27 325-351 154-180 (187) 115 COG3745 CpaB Flp pilus assembl 20.9 45 0.0012 12.2 1.7 16 86-101 93-108 (276) 116 PRK02710 plastocyanin; Provisi 20.6 46 0.0012 12.2 2.8 54 1-69 1-56 (119) 117 PRK12450 foldase protein PrsA; 20.5 46 0.0012 12.1 2.9 21 1-21 3-23 (309) 118 COG4814 Uncharacterized protei 20.3 20 0.0005 14.4 -0.9 25 2-26 1-25 (288) 119 PRK10386 curli assembly protei 20.3 47 0.0012 12.1 5.1 71 2-72 1-85 (131) 120 pfam00820 Lipoprotein_1 Borrel 20.2 41 0.001 12.5 0.8 18 2-19 1-18 (273) No 1 >PRK10833 putative assembly protein; Provisional Probab=100.00 E-value=0 Score=296.50 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=218.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE Q ss_conf 58899999999999999999885520858878999999999829819996214899736317999427982689987606 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES 81 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~ 81 (380) |||+++++++++++++++++++++|||||+||++|++||+++|||+++|+||++|+|||+++|.++++++.+|.+.+||+ T Consensus 1 MKrll~~l~illvvvv~gl~aLv~lvdPNd~k~~I~~qV~~~TGr~L~i~GDi~ws~fP~Lgi~~g~vsLs~p~~~~p~~ 80 (617) T PRK10833 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRAYMVKQVEARSGYQLQLDGDLRWHVWPQLSILSGRMSLTAPGASQPLV 80 (617) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEECCEEEECCCCCCCCE T ss_conf 94189999999999999999881504889979999999999779879987774699855214996766996999988802 Q ss_pred EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC---------CCCCCCCCEEEEEEEEECCEEEEE Q ss_conf 78679999870265249710113899644899998888880555555---------567665523653489728789998 Q gi|254780954|r 82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK---------STMDMIHNVILEKIHVKGGRIKII 152 (380) Q Consensus 82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~---------~~~~~~~~~~l~~i~i~~g~i~~~ 152 (380) +++++++++++||||+|+++|.+|+|++|.++|.++++|+.+|..+. .+...+|.++|++++|+|+.+.|. T Consensus 81 ~a~~~~l~V~l~PLLs~~l~V~~v~L~g~~i~L~~~~~g~~~~~~p~a~~~~~~~~~~~~~~~~l~I~~v~i~d~~l~~~ 160 (617) T PRK10833 81 SADNMRLDVALWPLLSHQLSVKQVMLKGAVIRLTPQSEAVRSEDAPVAPRDNTLPDVSDDRGWSFDISSLRVADSLLIWQ 160 (617) T ss_pred EEEEEEEEEEEHHHHCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEE T ss_conf 80076784787144369518989998077899767654667888877887778898765777247762389966489998 Q ss_pred ECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEEEEEEECCCCCEEEE Q ss_conf 56888178762015662155455522233333455278999887647201356540543335620589873256660689 Q gi|254780954|r 153 DQESDQVYFLSDLNLQISARFLNIISPLSIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIII 232 (380) Q Consensus 153 D~~~~~~~~i~~i~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 232 (380) + ..++.++++++|+.+..... ...+++++++.+.++....+++ ....+...++..+ T Consensus 161 ~-~~~~q~~l~dinL~l~~~~~----------~~~~~~~s~~i~~dq~dl~~sl-------------~g~~d~~~~~~~l 216 (617) T PRK10833 161 H-EDDEQVNVRDINLQMEQDAQ----------HQGSVEFSGRVNRDQRDLTLSL-------------NGTVDASDYPHQL 216 (617) T ss_pred C-CCCCEEEEEEEEEEECCCCC----------CCEEEEEEEECCCCCCCEEEEE-------------EEEEECCCCHHHH T ss_conf 4-89847999844687035888----------5179999754047774527999-------------9887434473440 Q ss_pred EEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEEEECCCCCCCEEEEEEEEECCCC Q ss_conf 98775430677604688999415674221235766750357888832451674123765046788602445899742888 Q gi|254780954|r 233 DLFGNLFWNEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTDEDNKTKVSQDEE 312 (380) Q Consensus 233 ~~~g~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~l~g~l~~~~~~~~~~~~~~~~g~~~~~~~~~G~~~v~~~~~ 312 (380) ..+ . .+..+.+.+..++..... ....+...++....++.+.++.+.. +...++|++.+.++.. T Consensus 217 ~a~--i--------~~l~~~l~G~~lP~~g~~---g~~~~~~~~~~~~~~l~L~~L~l~l----dd~~l~G~~~v~~~~~ 279 (617) T PRK10833 217 TAN--I--------EQLNYQLQGADLPAQGIS---GQGSLQAQWQESQKRLSLNQLNLTA----NDSQLSGSVQVTLGEK 279 (617) T ss_pred CCC--H--------HHCCCCCCCCCCCCCCCC---EEEEEEEEECCCCCEEEEECCEEEE----CCCEEEEEEEEECCCC T ss_conf 064--5--------540420336868987741---3899998832376566864235754----5837886899862888 Q ss_pred CCEEEEECCCCCEECCC Q ss_conf 51789930442200147 Q gi|254780954|r 313 NLLNFSENGAESMHDLN 329 (380) Q Consensus 313 ~~~~l~~~~~~~~~d~n 329 (380) |.+++++++..+|+|.- T Consensus 280 P~i~~~L~~d~LDLD~y 296 (617) T PRK10833 280 PEWQLDLQSDKLNLDNL 296 (617) T ss_pred CEEEEEEECCCCCCCCC T ss_conf 62899953583045445 No 2 >pfam05170 AsmA AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis. Probab=100.00 E-value=1.1e-40 Score=259.97 Aligned_cols=170 Identities=18% Similarity=0.316 Sum_probs=155.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE Q ss_conf 58899999999999999999885520858878999999999829819996214899736317999427982689987606 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES 81 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~ 81 (380) |||++++++++++++++++++++++||||+||++|+++++++|||+|+|+|+++|+|||+|+|++++|++++|++.+||+ T Consensus 1 Mk~~lk~l~~i~~~lv~~~~~l~~~~d~n~~k~~i~~~v~~~TGr~l~i~G~i~ls~fP~~~v~l~~vsl~n~~~~~~~~ 80 (537) T pfam05170 1 MKKALKILLIILIVLLLLIIALIALFDPNYFKPTIQQKVSAASGRPLQIDGDIGRSLFPWPHLSLENVTLGSPGGPATLV 80 (537) T ss_pred CHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCE T ss_conf 94589999999999999999860752889979999999999889859994765689888874999002885899986526 Q ss_pred EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCEEEEEEEE Q ss_conf 786799998702652497101138996448999988888805555555-----------------676655236534897 Q gi|254780954|r 82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----------------TMDMIHNVILEKIHV 144 (380) Q Consensus 82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----------------~~~~~~~~~l~~i~i 144 (380) +++++++++++||||+|+++|++|+|++|+++|+++++|+.||.+..+ .....+.+.++++.| T Consensus 81 ~~~~~~~~v~l~pLL~g~v~i~~v~L~~~~i~L~r~~~G~~Nw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i 160 (537) T pfam05170 81 SVEQVDIWLSPLPLLTKQLQIDSILLDGASLALTRLTEGNPNWDDLLQLRDNALPNAPTQQPQPTWDRPAWSIDISAIQV 160 (537) T ss_pred EEEEEEEEEEEHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE T ss_conf 83489999876898589538959998476799886787766854335545544567654445655667566300375899 Q ss_pred ECCEEEEEECCCCCEEEEEEEEEEECC Q ss_conf 287899985688817876201566215 Q gi|254780954|r 145 KGGRIKIIDQESDQVYFLSDLNLQISA 171 (380) Q Consensus 145 ~~g~i~~~D~~~~~~~~i~~i~l~l~~ 171 (380) ++|++.|.|...+......++++.... T Consensus 161 ~~g~l~~~d~~~~~~~~~~~l~l~~~~ 187 (537) T pfam05170 161 SNGVVTWDDEASKKVLNDIDLQLQVDP 187 (537) T ss_pred ECCEEEEECCCCCEEEEEECCEEECCC T ss_conf 778899734567616886131240363 No 3 >COG2982 AsmA Uncharacterized protein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=3.1e-34 Score=221.48 Aligned_cols=156 Identities=23% Similarity=0.414 Sum_probs=143.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCC-E Q ss_conf 588999999999999999998855208588789999999998298199962148997363179994279826899876-0 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSF-E 80 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~-~ 80 (380) |+|++.++.+++|+++++.+++..+|+||+||+++.+++++++||+++|+||+.|++||+|++.+++++|+++....| + T Consensus 4 ~~~~l~~~l~~~i~~ia~~~~~~~lf~pN~~k~~i~q~v~a~t~~~l~i~Gdi~w~~~P~~~v~l~d~tLs~~g~~~p~~ 83 (648) T COG2982 4 MRKVLVSLLGILILVIALLAAVLPLFDPNDFKDTIVQQVSAATGRPLAINGDLGWRLWPWPSVILEDITLSNPGAAEPHL 83 (648) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEECCCCEECCCCCCCCCE T ss_conf 77889999999999999999986526822000899999999858964661676442277650250342634888888746 Q ss_pred EEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCC----------CCCCCCCCEEEEEEEEECCEEE Q ss_conf 678679999870265249710113899644899998888880555555----------5676655236534897287899 Q gi|254780954|r 81 SKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRK----------STMDMIHNVILEKIHVKGGRIK 150 (380) Q Consensus 81 ~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~----------~~~~~~~~~~l~~i~i~~g~i~ 150 (380) ++++++++++++||||+++++|++++|++|.++|++..+|++||++.. ..+...|.+.++++.+.+|.+. T Consensus 84 v~~~~v~~sla~lpLl~~~l~i~~i~L~~p~i~L~r~~~g~~nw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~v~~g~v~ 163 (648) T COG2982 84 VSAERVGASLALLPLLSKQLQISQIRLDGPVIRLERLAEGRNNWDAPTAPQDPNTTPSSSSASAWSFDIGSLKVDDGRVI 163 (648) T ss_pred EEEEEEEEEEEEHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEE T ss_conf 88540135532003331566401589727557647843443462345676566666666665456756585565166799 Q ss_pred EEECCCC Q ss_conf 9856888 Q gi|254780954|r 151 IIDQESD 157 (380) Q Consensus 151 ~~D~~~~ 157 (380) |.|.... T Consensus 164 ~~d~~~~ 170 (648) T COG2982 164 FQDKNSE 170 (648) T ss_pred EECCCCC T ss_conf 9524433 No 4 >TIGR02099 TIGR02099 conserved hypothetical protein TIGR02099; InterPro: IPR011836 This entry describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane.. Probab=99.81 E-value=8.6e-17 Score=117.67 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=134.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCC Q ss_conf 95889999999999999999988552085--88789999999998298199962148997363-1799942798268998 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDG 77 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~ 77 (380) .++|+++.++.++++++++++.+.+.+-| |.||++|++++++.+|.+|.| |.++-+|--+ |.+.+++|.|..++.- T Consensus 2 ~L~~~~~~l~A~~lV~~AL~Vs~~r~lLP~~d~~R~~i~~~~~s~~G~~v~i-~~L~g~W~~~~P~L~l~~~~i~~~~~~ 80 (1362) T TIGR02099 2 RLRRIALSLLALILVVAALLVSLLRQLLPLVDEYRPQIEQKLSSALGIPVAI-GSLSGSWQRFGPTLELSGVRIAEPDKV 80 (1362) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE-EEEEEEEEEECCEEEECCCEECCCCCC T ss_conf 2488999999999999999999999862345544699999887751883577-531355440088788664175288885 Q ss_pred CCEEEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCC--------CCEEEEEEEEECCE Q ss_conf 7606786799998702-65249710113899644899998888880555555567665--------52365348972878 Q gi|254780954|r 78 SFESKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMI--------HNVILEKIHVKGGR 148 (380) Q Consensus 78 ~~~~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~--------~~~~l~~i~i~~g~ 148 (380) ..-+.++++++.+.+| +||..+++|.+++++|+++.|.++.+|.++--..+..+.+. .--.+++|.|.|++ T Consensus 81 ~~~l~~~~v~~~~d~W~SLL~~~~~~~dl~~~Gl~l~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~Lrq~~~l~L~~s~ 160 (1362) T TIGR02099 81 AGELLVKRVEVALDLWQSLLHRQPRLADLRVDGLALTLRRDDDGGWEVGGNPLTSNQSLDDNLLLLLLRQLDRLSLRDSR 160 (1362) T ss_pred CCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCE T ss_conf 31013300589740011200455289998987535788554133230176046888887855158898428841230223 Q ss_pred EEEEECCC-CCEEEEEEEEEEEC Q ss_conf 99985688-81787620156621 Q gi|254780954|r 149 IKIIDQES-DQVYFLSDLNLQIS 170 (380) Q Consensus 149 i~~~D~~~-~~~~~i~~i~l~l~ 170 (380) |.|.+... +....+...+|... T Consensus 161 i~~~~~~~G~~~~~L~~~~L~w~ 183 (1362) T TIGR02099 161 ISLLTLRSGGDRLTLEIPQLRWL 183 (1362) T ss_pred EEECCCCCCCCCCCCCCHHCEEE T ss_conf 13304113886564532000011 No 5 >COG3164 Predicted membrane protein [Function unknown] Probab=99.54 E-value=7.5e-13 Score=94.19 Aligned_cols=167 Identities=13% Similarity=0.137 Sum_probs=116.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHCCEEEEECCEEEEECC-CEEEEEEEEEEECCCCCCCE Q ss_conf 89999999999999999988552085--8878999999999829819996214899736-31799942798268998760 Q gi|254780954|r 4 RVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQATLIVGKKIAVKGGIKIHILP-FPSVFFKDIRIDQKEDGSFE 80 (380) Q Consensus 4 ~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P-~p~i~~~~v~i~~~~~~~~~ 80 (380) |+++..|..++++++.++.+.+..-| +.||++|+.++++.+|.||.| +.+.-+|-- -|.+.+.++.+..+++.. T Consensus 6 ril~~t~a~l~Vl~aL~Vs~lR~llP~v~~~r~qi~~~~~~~tg~pV~i-~~L~~sW~~fgP~l~aq~I~a~~~~g~~-- 82 (1271) T COG3164 6 RILLLTGAALLVLAALLVSLLRQLLPLVNRYRPQIEDKISSVTGIPVRI-AQLQGSWRNFGPTLEAQDIRAGDPDGGR-- 82 (1271) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-HHHCCEEECCCCCEEEEEEECCCCCCCE-- T ss_conf 8999998999999999999999988878777899999976531871787-0201513436661687300035876660-- Q ss_pred EEEEEEEEEEEHH-HHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCC-CCCCCCCCC---EEEEEEEEECCEEEEEECC Q ss_conf 6786799998702-6524971011389964489999888888055555-556766552---3653489728789998568 Q gi|254780954|r 81 SKIEGLSMRAEFL-PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQR-KSTMDMIHN---VILEKIHVKGGRIKIIDQE 155 (380) Q Consensus 81 ~~~~~~~v~i~l~-~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~-~~~~~~~~~---~~l~~i~i~~g~i~~~D~~ 155 (380) +.+.++++-+.+| +|+.+++.|..+++ +.++.+.++..|++.-... +.+...... -.+++|.+.|++|.|.+.. T Consensus 83 l~~~rV~la~d~wqSLl~~q~~f~dLt~-g~~L~lr~~~~g~~s~~g~~~~~~~~~~d~fLrQ~d~fdlrds~is~lt~s 161 (1271) T COG3164 83 LSAARVTLALDVWQSLLHRQWQFRDLTF-GLQLTLRRDTTGAWSVNGGDGREDGRLSDLFLRQLDRFDLRDSALSFLTPS 161 (1271) T ss_pred EEEEEEEEHHHHHHHHHCCCEEEEEEEC-CEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCEEEEECCC T ss_conf 5566665469888666314445102211-227998617864200068987555741689986337434305547873688 Q ss_pred CCCEEEEEEEEEEECCCCCC Q ss_conf 88178762015662155455 Q gi|254780954|r 156 SDQVYFLSDLNLQISARFLN 175 (380) Q Consensus 156 ~~~~~~i~~i~l~l~~~~~~ 175 (380) . ....+....+.......+ T Consensus 162 ~-~~a~L~~~~ltw~n~~~R 180 (1271) T COG3164 162 G-PRAELAIPQLTWLNSPLR 180 (1271) T ss_pred C-CHHHHCCCCEEEECCCCC T ss_conf 8-222213533144137754 No 6 >TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair. Probab=99.26 E-value=7.9e-11 Score=82.16 Aligned_cols=108 Identities=12% Similarity=0.237 Sum_probs=89.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC-CCCEEEEEEEEEEEE Q ss_conf 9999999998855208588789999999998298199962148997363179994279826899-876067867999987 Q gi|254780954|r 13 FSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED-GSFESKIEGLSMRAE 91 (380) Q Consensus 13 lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~-~~~~~~~~~~~v~i~ 91 (380) +++++++++++.+|+--...|..+|...++..|-+|.| ++++.+|+|. ++++.++.+.+|+. ..++++++++.++++ T Consensus 10 f~~v~a~I~~~~~~f~d~l~K~~ie~~~~~~~gA~VeI-~~v~~~l~P~-~i~i~glqVtDp~~Pm~Nl~~~~~i~~~i~ 87 (554) T TIGR03545 10 FLIVVAVILALLYFFFDLLAKKAIVRGGEAAFGAKVEI-ASVDVGLFPL-QLSIQGLQVTDPDKPMRNLFEIDRIDASID 87 (554) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEECCCCCC-EEEEECEEECCCCCCCCCEEEEEEEEEECC T ss_conf 99999999999999988999999999888750864777-7554133564-378803374499850101016303468534 Q ss_pred HHHHHCCCCCCCEEEEECCEEEEEECCCCCC Q ss_conf 0265249710113899644899998888880 Q gi|254780954|r 92 FLPLLSGEIRVFDMYIDQPHLNFYLSSKGVS 122 (380) Q Consensus 92 l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~ 122 (380) +.+||.|++.|.++.++|..++-+|...|.. T Consensus 88 ~~~LL~~kviIe~~~i~gv~~~t~R~tsG~v 118 (554) T TIGR03545 88 WDALLRGKVVIEEAAVEGLAFGTPRSTSGAV 118 (554) T ss_pred HHHHHHCEEEEEECEEEEEEECCCCCCCCCC T ss_conf 6987422055030235213607856778766 No 7 >COG2911 Uncharacterized protein conserved in bacteria [Function unknown] Probab=97.65 E-value=0.00054 Score=41.48 Aligned_cols=148 Identities=9% Similarity=-0.079 Sum_probs=91.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCC---EEEEEEEEEEECCCCCC Q ss_conf 588999999999999999998855208588789999999998298199962148997363---17999427982689987 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPF---PSVFFKDIRIDQKEDGS 78 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~---p~i~~~~v~i~~~~~~~ 78 (380) ||++.+.++++++++++++..+..+.-++.-..++-.++.+..... .+ +.++.++.+. =.+...+++|.... . T Consensus 8 ~~~~~~~~~~~l~~ill~v~~l~~~~~t~~G~~~~~~~~~~~~~~~-~~-~~vsg~~~~gll~~~~~~~~~~v~~~~--G 83 (1278) T COG2911 8 MRWLKKASAGLLAVILLLVLALGGLLGTTPGLRYGLNAIDSWLPGL-DI-EKVSGSLRGGLLLGDVRYDRLGVADRA--G 83 (1278) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC-CE-EEEEECCCCCCEECCCCCCCEEEEECC--C T ss_conf 4799999999999999999998603024722468999998657678-72-479833758821366000202688056--7 Q ss_pred CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEECC Q ss_conf 60678679999870265249710113899644899998888880555555567665523653489728789998568 Q gi|254780954|r 79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQE 155 (380) Q Consensus 79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~~~~~~~~~~l~~i~i~~g~i~~~D~~ 155 (380) ..+.+.++++..+..-|++.+.....+.-.+ +.+.+.+..-.--..+......+..++++..++...+|.+.+.. T Consensus 84 ~~~~~~~~~~~W~~~~l~~~~~~~~~isA~~--i~v~~~p~p~~~~s~~~~~~s~~lPi~l~~~~~~~~~i~i~~~~ 158 (1278) T COG2911 84 QLLLALDLRCLWSPSALFRLRLLADRISAGD--IAVLRPPTPDKEPSGPSSRISTPLPISLDLDALDVIRITIGKTT 158 (1278) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECEECCEEEEECCCC T ss_conf 2588515632467878766664210221130--01136899998888855567776676987031111157536531 No 8 >pfam05359 DUF748 Domain of Unknown Function (DUF748). Probab=97.39 E-value=0.0064 Score=35.09 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=32.2 Q ss_pred CCEEEEEEEEECCEEEEEECCCC--CEEEEEEEEEEECCCC Q ss_conf 52365348972878999856888--1787620156621554 Q gi|254780954|r 135 HNVILEKIHVKGGRIKIIDQESD--QVYFLSDLNLQISARF 173 (380) Q Consensus 135 ~~~~l~~i~i~~g~i~~~D~~~~--~~~~i~~i~l~l~~~~ 173 (380) |.+.|+++.+.+|+|.|.|.... ..+.++++++.+.... T Consensus 1 w~~~i~~~~l~~g~i~f~D~~~~~~~~~~l~~l~~~l~~ls 41 (150) T pfam05359 1 WRVSIGNLALENGSVDFADRSLSPPFATTIDPLNLTLSNLS 41 (150) T ss_pred CEEEEEEEEEECCEEEEEECCCCCCCEEEEEEEEEEEEECC T ss_conf 97999079998999999968999880799986089997512 No 9 >pfam08118 MDM31_MDM32 Yeast mitochondrial distribution and morphology (MDM) proteins. Proteins in this family are yeast mitochondrial inner membrane proteins MDM31 and MDM32. These proteins are required for the maintenance of mitochondrial morphology, and the stability of mitochondrial DNA. Probab=96.78 E-value=0.031 Score=30.99 Aligned_cols=140 Identities=7% Similarity=0.079 Sum_probs=95.9 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCC-------------------------------- Q ss_conf 588789999999998298199962148997363179994279826899-------------------------------- Q gi|254780954|r 29 WTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKED-------------------------------- 76 (380) Q Consensus 29 ~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~-------------------------------- 76 (380) .+..-..+-+.+.+.+|..|.++..|.= =|-.=.|++++|-++-.++ T Consensus 72 qE~la~~vg~~ltk~sg~~vvFesAiVP-~W~~g~I~F~nv~VSrrP~~~~~~~kgs~~~~~~~~~~~~~~~~~~~~~~~ 150 (503) T pfam08118 72 QEYVARKVGNFLTKNSALTVVFESAIVP-DWSSGKISFRKVFVSRRPKLSHKFTKGSQHEAYERAKLALSENLLVEDEDF 150 (503) T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCC-CCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999998765301367857998304567-766665999777897077656564557617788866553302455454434 Q ss_pred -C----CCEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----CCCCCCCEEEEEEEEEC Q ss_conf -8----7606786799998702652497101138996448999988888805555555-----67665523653489728 Q gi|254780954|r 77 -G----SFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----TMDMIHNVILEKIHVKG 146 (380) Q Consensus 77 -~----~~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----~~~~~~~~~l~~i~i~~ 146 (380) . +-=++++.+.+.+++.-.+.|+=-|.++++.|..-.+.|. ...|..... ..-.+.++.++++.+.| T Consensus 151 dd~nytqFDltI~~vnvtLSf~KW~nGkGli~dvei~GvrGvVdr~---~v~w~~~~dp~~y~~~~~pgdfe~~~fkm~D 227 (503) T pfam08118 151 DDGNYTQFDLTIDQVNISLSLNKWINGKGMIDEVEINGLRGVVDRT---HVHWKADDDARNYKNVHQPGDFEISNFKMND 227 (503) T ss_pred CCCCEEEEEEEEEEEEEEEEEHHHHCCCCEEEEEEEEEEEEEEECC---EECCCCCCCHHHHHCCCCCCCEEEEEEEEEE T ss_conf 5787268998888999999906751687312678998416899732---2316888997897344589977864589998 Q ss_pred CEEEEEECCCCCEEEEEEEEEEECCC Q ss_conf 78999856888178762015662155 Q gi|254780954|r 147 GRIKIIDQESDQVYFLSDLNLQISAR 172 (380) Q Consensus 147 g~i~~~D~~~~~~~~i~~i~l~l~~~ 172 (380) .-+++.++...+...++-.+..++.. T Consensus 228 ~lvtvyqp~~frPf~vSIf~cdLPqL 253 (503) T pfam08118 228 VLFTLYQPGGFRPFQVSIFNCELPQL 253 (503) T ss_pred EEEEEECCCCCCCEEEEEEECCCHHH T ss_conf 89998738887620588640556454 No 10 >PRK10695 hypothetical protein; Provisional Probab=95.76 E-value=0.11 Score=27.64 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=40.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCC Q ss_conf 9588999999999999999998855208588789999999998--29819996214899736317999427982689987 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI--VGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGS 78 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~--~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~ 78 (380) |.||....++++++++++.+..+..+ -..+..-+.-. .|.++.+.....|+-. ++.+.++++.. +.- T Consensus 1 M~k~~k~~~~~lll~~l~~~~l~~T~------~~wlp~va~~wLP~g~~l~l~~~p~~~~~---~l~lp~~~~~~--~~C 69 (876) T PRK10695 1 MLKKYKAVIALLLLLILVPLTLLMTL------PLWLPTVAGIWLPAGTRIALDQSPRWTRG---GLRLPDLRYLV--GDC 69 (876) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHCCCCCCCCEEEECCCCCEECC---CEECCCEEEEE--CCC T ss_conf 96045789999999999998888622------46667662633799858971689830258---55558748881--885 Q ss_pred CEEEEEEEEEEEEHHHHHCCCCCCCEEEEECCEE Q ss_conf 6067867999987026524971011389964489 Q gi|254780954|r 79 FESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHL 112 (380) Q Consensus 79 ~~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i 112 (380) ++++++++++.. . -+.++.+..++||-+-+ T Consensus 70 ~la~~~~~~l~~--~--~~w~l~~~~l~lD~aCL 99 (876) T PRK10695 70 TLAHIDNLSLSW--P--SRWQLSIGTLTLDSACL 99 (876) T ss_pred CEEECCCCEECC--C--CCEEEECCCCCCCHHHH T ss_conf 258853518825--6--30078503032158999 No 11 >pfam01203 GSPII_N Bacterial type II secretion system protein N. Probab=94.88 E-value=0.22 Score=25.93 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=49.0 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCE Q ss_conf 588-9999999999999999988552085887899999999982981999621489973631799942798268998760 Q gi|254780954|r 2 LRR-VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFE 80 (380) Q Consensus 2 mk~-ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~ 80 (380) ||| +++++.++.+++++.+..+|.- .+..++ ..-..|.+. .++=++| +=.+..+++. + T Consensus 1 Mk~~~~~~~l~~~~~l~~Li~~lPA~--------~v~~~~--~lp~~v~l~-gvsGTlW---~G~a~~v~~~---~---- 59 (251) T pfam01203 1 MKRKIVIGLLFVVAYLVFLLAHLPAR--------LVLSLA--PLPAGVSLS-GVSGTLW---QGRAKRVSWQ---N---- 59 (251) T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHH--------HHHHHC--CCCCCEEEE-CCCCCEE---ECEEEEEEEC---C---- T ss_conf 94453137899999999999985799--------998517--799853894-5455657---1347388998---6---- Q ss_pred EEEEEEEEEEEHHHHHCCCCCCC Q ss_conf 67867999987026524971011 Q gi|254780954|r 81 SKIEGLSMRAEFLPLLSGEIRVF 103 (380) Q Consensus 81 ~~~~~~~v~i~l~~Ll~~~~~i~ 103 (380) ..+++++-++++|+||.|+++++ T Consensus 60 ~~lg~V~W~l~p~~Ll~G~~~~~ 82 (251) T pfam01203 60 LPLGRVSWSLSPLSLLTGRLKLD 82 (251) T ss_pred EECCEEEEEEEHHHHHCCCEEEE T ss_conf 83200799962899717875899 No 12 >COG4093 Uncharacterized protein conserved in bacteria [Function unknown] Probab=94.33 E-value=0.3 Score=25.13 Aligned_cols=99 Identities=21% Similarity=0.271 Sum_probs=64.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHCCEEEEECCEEEEECCC-EEEEEEEEEEECCCCCCC Q ss_conf 889999999999999999988552085887899999999--98298199962148997363-179994279826899876 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQAT--LIVGKKIAVKGGIKIHILPF-PSVFFKDIRIDQKEDGSF 79 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s--~~~g~~v~i~G~i~~~l~P~-p~i~~~~v~i~~~~~~~~ 79 (380) ||+|+.+. ++++++++....+|+--++.+++.-+++. ++.|..+.- +++.++=+|+ ..|.-++|++.++..+- T Consensus 14 kr~~wl~i--~ivv~~g~ySaGWFylA~rle~~~~a~~a~l~a~Gv~~~c-~~l~~~GyPfRi~v~cd~v~~~d~~~G~- 89 (338) T COG4093 14 KRLFWLVI--AIVVLIGAYSAGWFYLADRLEQQADAQAADLQARGVSGEC-ANLTFSGYPFRINVFCDKVRVDDPTEGW- 89 (338) T ss_pred CCHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-ECEEECCCCEEEEEEECCEEECCCCCCH- T ss_conf 22348999--9999887750107667769999998764213103035525-1107505653898785124733786551- Q ss_pred EEEEEEEEEEEEHHHHHCCCCCCCEEEEECC Q ss_conf 0678679999870265249710113899644 Q gi|254780954|r 80 ESKIEGLSMRAEFLPLLSGEIRVFDMYIDQP 110 (380) Q Consensus 80 ~~~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p 110 (380) .+++.+++-.-.+....+- -..|++| T Consensus 90 aas~g~l~s~AqvY~p~~~-----V~~L~gp 115 (338) T COG4093 90 AASAGQLRSAAQVYNPGHW-----VLELDGP 115 (338) T ss_pred HHCCCCCCCCCCCCCCCCE-----EEECCCC T ss_conf 1105433454300157725-----7744786 No 13 >TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function. Probab=92.98 E-value=0.29 Score=25.28 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=35.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------HHHCCHHHHH---HHHHHHHHHHHCCEEEEE Q ss_conf 95889999999999999999988----------5520858878---999999999829819996 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTV----------PLFIDWTDFR---EDFERQATLIVGKKIAVK 51 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~----------~~~~d~~~~k---~~i~~~~s~~~g~~v~i~ 51 (380) ||||+|.++..+++++...+.+- .-..++.... ..+.+.+++.+|++|.+. T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~Ve~~ 64 (288) T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKVKLF 64 (288) T ss_pred CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 9088999999999997432243048836899980699999999999999999999878978999 No 14 >PRK10834 hypothetical protein; Provisional Probab=83.13 E-value=1.8 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 95889999999999999999988552085 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW 29 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~ 29 (380) |+||++.++.++++++++.++++-+.+.| T Consensus 1 m~Krl~~~~~~~~~~~~~~i~~~d~wv~~ 29 (239) T PRK10834 1 MLKRVFYSLLVLIGLLLLTVLGLDRWMSW 29 (239) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97999999999999999999998798854 No 15 >PRK11715 hypothetical protein; Provisional Probab=82.08 E-value=2.9 Score=19.27 Aligned_cols=53 Identities=13% Similarity=0.275 Sum_probs=32.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEE Q ss_conf 89999999999999999988552085887899999999982981999621489 Q gi|254780954|r 4 RVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKI 56 (380) Q Consensus 4 ~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~ 56 (380) |++++.+.++++.+-..++--..-+-..++..+++++.+..|.+-+|.|++=+ T Consensus 9 K~~~i~~L~lLLlIPl~~I~~li~ER~~~~~~v~~eI~~swgg~Q~i~GPvL~ 61 (427) T PRK11715 9 KILTIGGLILLLLIPLGMIRGLISERSDYRDEVVDEIAQSWGGPQTLTGPVLV 61 (427) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE T ss_conf 99999999999999999999999999999999999999842788599524899 No 16 >PHA00019 phage assembly protein Probab=81.20 E-value=2.4 Score=19.74 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=33.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCH-H-HHHHHHHHHHHHHHCCEEEEECCEE Q ss_conf 95889999999999999999988552085-8-8789999999998298199962148 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW-T-DFREDFERQATLIVGKKIAVKGGIK 55 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~-~-~~k~~i~~~~s~~~g~~v~i~G~i~ 55 (380) |||++++.+. ++++..+++..-+.-++. | ..| .+-+.+++.+|+.+.++.+++ T Consensus 1 ~~~~~~~~~~-~~~~~~~~~s~~~isl~f~d~dIr-~vl~~la~~tg~NiVi~~~V~ 55 (428) T PHA00019 1 MIKSIFAKML-LFLLMFLSFSSFALPVELNNSPIR-EFVSWYSQQTGKSVVLGPDVK 55 (428) T ss_pred CHHHHHHHHH-HHHHHHHCCCCCEEEEEEECCCHH-HHHHHHHHHHCCEEEECCCCC T ss_conf 9274899999-999877405674477885087799-999999984497399899977 No 17 >KOG3448 consensus Probab=80.47 E-value=1.2 Score=21.48 Aligned_cols=62 Identities=8% Similarity=0.237 Sum_probs=46.7 Q ss_pred HHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEE Q ss_conf 588789999999998298199962148997363179994279826899876067867999987 Q gi|254780954|r 29 WTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFESKIEGLSMRAE 91 (380) Q Consensus 29 ~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~~~~~~~v~i~ 91 (380) +..||..+-+.++-.+...+.|.|.+. ++-|++-+.+.++++.+++..+.+.++++..++=+ T Consensus 4 ysfFkslvg~~V~VeLKnd~~i~GtL~-svDqyLNlkL~di~v~d~~kyPhm~Sv~ncfIRGS 65 (96) T KOG3448 4 YSFFKSLVGKEVVVELKNDLSICGTLH-SVDQYLNLKLTDISVTDPDKYPHMLSVKNCFIRGS 65 (96) T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEC-CCCHHHEEEEEEEEEECCCCCCCCEEEEEEEEECC T ss_conf 999997558748999818838987753-54521003776668607543898145556798142 No 18 >pfam07273 DUF1439 Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown. Probab=79.92 E-value=3.5 Score=18.83 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=26.4 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHCCEEEEE--CCEEEEECCCEEEEEEEEEEEC Q ss_conf 5889999999999999999-9885520858878999999999829819996--2148997363179994279826 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGA-FTVPLFIDWTDFREDFERQATLIVGKKIAVK--GGIKIHILPFPSVFFKDIRIDQ 73 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~-~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~--G~i~~~l~P~p~i~~~~v~i~~ 73 (380) ||++++.+.. +++++.+- -+..|-|.- ++|++++.+...++-.+. | ++ ...+.++++.+.- T Consensus 1 Mk~~~~~~~~-l~~~LsgC~~ls~ysISE----~Ein~yL~k~~~~~k~~gi~g-----l~-~~~~~l~~l~v~I 64 (177) T pfam07273 1 MKKLLLLILL-LVLLLSGCASLSQYSISE----AEINQYLQKEVHLEKKVGIPG-----LA-PADVSLNDLDVQI 64 (177) T ss_pred CCHHHHHHHH-HHHHHHCCCCCCCEEECH----HHHHHHHHHHCCHHHHHCCCC-----CE-EEEEEECCCEEEE T ss_conf 9148999999-999971557566252669----999999987457778608877-----33-5799973550462 No 19 >PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed Probab=79.56 E-value=2.3 Score=19.91 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=26.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHH-HHHHHHHHHHHCCEEEEECCE Q ss_conf 889999999999999999988-------5520858878-999999999829819996214 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFR-EDFERQATLIVGKKIAVKGGI 54 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k-~~i~~~~s~~~g~~v~i~G~i 54 (380) |||++++++++++.++.++++ .||+.|..+- ...+.+-....|+.+++.|=+ T Consensus 7 ~RL~~v~~~~~~l~~a~~Lvl~al~~ni~yFytPsev~~~~~~~~~~~~~g~~iRlGGlV 66 (159) T PRK13150 7 NRLWVVCAVLAGLGLTTALVLYALRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMV 66 (159) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCCCCCCCCCCCCCCEEEEEEEE T ss_conf 689999999999999999999998717448867899851212000256779659981498 No 20 >PRK10598 hypothetical protein; Provisional Probab=79.33 E-value=3.6 Score=18.71 Aligned_cols=65 Identities=8% Similarity=0.091 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECC Q ss_conf 5889999999999999-999988552085887899999999982981999621489973631799942798268 Q gi|254780954|r 2 LRRVLIGLGFLFSVVL-VGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQK 74 (380) Q Consensus 2 mk~ll~~~~~~lvl~~-~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~ 74 (380) ||+++...+.+++.++ ++.-+..|-|. -++|++.+++...++..++ +.=....++.++++.+.-. T Consensus 1 mkk~~l~~~l~l~~llsGC~~l~qYsIS----EqEin~YL~~~~~~~k~iG----i~gl~~a~i~l~dl~v~IG 66 (186) T PRK10598 1 MKKFLLAAALLVSGLLVGCNQLTQYTIS----EQEINQYLAKHNNFSKDIG----LPGVADAHIVLTNLQSQIG 66 (186) T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEC----HHHHHHHHHHHCCHHHHCC----CCCCEEEEEEEEEEEEEEC T ss_conf 9126999999999997143533644007----9999999987433787718----8874246899803045607 No 21 >pfam06123 CreD Inner membrane protein CreD. This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with an Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA. Probab=79.01 E-value=3.7 Score=18.65 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=37.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEE Q ss_conf 5889999999999999999988552085887899999999982981999621489 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKI 56 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~ 56 (380) +.|++++.+.++++.+-..++--..-+-..++..+++++.+..|.+-+|.|++=. T Consensus 4 ~~K~~~i~~L~llLlIPl~mI~~lI~ER~~~~~~v~~eI~~swgg~Q~i~GPvL~ 58 (430) T pfam06123 4 TLKILIIGILILLLLIPLLMVQGLISERQSRRDEVVAEIAQSWGGEQTLTGPVLV 58 (430) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE T ss_conf 8999999999999999999999999999999999999998742788599704899 No 22 >PRK13861 type IV secretion system protein VirB9; Provisional Probab=78.51 E-value=2.1 Score=20.14 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=12.7 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 95889999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVL 17 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~ 17 (380) |||+|++++++++.+.. T Consensus 1 mmk~l~~~~~~~l~~~~ 17 (293) T PRK13861 1 MIKKLFLTLACLLFAAI 17 (293) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 90899999999998612 No 23 >PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed Probab=77.67 E-value=2.8 Score=19.36 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=44.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHH-HHHHHHHHHHCCEEEEECCEE---EEECCC-EEEEEEEEE Q ss_conf 8899999999999999999885-------5208588789-999999998298199962148---997363-179994279 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVP-------LFIDWTDFRE-DFERQATLIVGKKIAVKGGIK---IHILPF-PSVFFKDIR 70 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~-------~~~d~~~~k~-~i~~~~s~~~g~~v~i~G~i~---~~l~P~-p~i~~~~v~ 70 (380) ||+++++++++++.+++++++- ||+.|..+.. .....-.-..|+.+++.|-+. +..-+. +.++ +. T Consensus 7 kRl~~i~~~~~~l~~a~~Lil~al~~ni~yF~TPsEv~~~~~~~~~~p~~g~~iRvGGlV~~gSv~r~~~~l~v~---F~ 83 (161) T PRK13165 7 KRLWLACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQKPEVGQRLRVGGMVMPGSVQRDPNSLKVS---FT 83 (161) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHCCCCCCCCCCCCCCEEEEEEEEECCEEEECCCCCEEE---EE T ss_conf 679999999999999999999998717318867899850336544466668469970388638599779962799---99 Q ss_pred EECCCCCCCEEEEEEEEEEEE-HHH-HHC-CCCCCCEEEEEC Q ss_conf 826899876067867999987-026-524-971011389964 Q gi|254780954|r 71 IDQKEDGSFESKIEGLSMRAE-FLP-LLS-GEIRVFDMYIDQ 109 (380) Q Consensus 71 i~~~~~~~~~~~~~~~~v~i~-l~~-Ll~-~~~~i~~i~L~~ 109 (380) |.+ .. ..+.|... +.| ||+ |+-.|.+=+++. T Consensus 84 iTD--~~------~~i~V~Y~GilPDLFrEGqGVVaeG~~~~ 117 (161) T PRK13165 84 VYD--AG------GSVTVTYEGILPDLFREGQGIVAQGVLEE 117 (161) T ss_pred EEC--CC------CEEEEEECCCCCHHHHCCCEEEEEEEECC T ss_conf 976--88------67999984779403326983999999879 No 24 >PRK10270 hypothetical protein; Provisional Probab=75.00 E-value=3.5 Score=18.79 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999988 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV 23 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~ 23 (380) |||+++++.++++++.+++.+. T Consensus 1 Mkk~~~~~~~l~~~l~i~~g~~ 22 (340) T PRK10270 1 MKKVLLIILLLLVVLGIAAGVG 22 (340) T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 9028999999999999999999 No 25 >PRK00315 potassium-transporting ATPase subunit C; Reviewed Probab=75.00 E-value=4.5 Score=18.17 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=31.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEEEECC Q ss_conf 9588999999999999999998855208588789999999--9982981999621 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIAVKGG 53 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~i~G~ 53 (380) |||.+...+..++++.++..++.|..+ .-|.+-+ .++-|--++.+|. T Consensus 1 M~k~l~~al~~~l~~~vl~G~~YPl~v------tgiaq~~fp~qAnGSli~~~G~ 49 (195) T PRK00315 1 MMKGLRPALVLFLFLLLITGGAYPLLT------TGLGQWWFPWQANGSLIRDDGK 49 (195) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEECCE T ss_conf 958899999999999999999999999------9999986756588875707999 No 26 >PRK11622 putative ABC transporter solute-binding protein; Provisional Probab=73.66 E-value=4.4 Score=18.25 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=30.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH----------------HHHCCH------HHHHHHHHHHHHHHHCCEEE Q ss_conf 95889999999999999999988----------------552085------88789999999998298199 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTV----------------PLFIDW------TDFREDFERQATLIVGKKIA 49 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~----------------~~~~d~------~~~k~~i~~~~s~~~g~~v~ 49 (380) |||+++.+++.+.++.+.+...- ++|.-| |.|-.++.+++.+++|..|+ T Consensus 1 ~~r~~~~~~~~l~~~~~~~~~~~~~~~W~~i~~~A~GqtV~f~aWGGs~~iN~yi~w~~~~l~~~y~ItL~ 71 (401) T PRK11622 1 MMRHLLALLGLLALLSLAAAASDAANTWQQILEEAKGQTVYFNAWGGSPAINRYLDWVAKELKERYGITLK 71 (401) T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEE T ss_conf 95889999999998750145764448999999971698899997679577759999999999998596689 No 27 >TIGR02112 cyd_oper_ybgE cyd operon protein YbgE; InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria .. Probab=72.22 E-value=5.6 Score=17.59 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=23.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 9588999999999999999998855208588789999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFE 37 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~ 37 (380) |-|+.|..+..++.+..+ ...++||++|-+++. T Consensus 8 ~dKg~LraLSfiLA~l~~----~~~~wdP~~Fa~~~g 40 (93) T TIGR02112 8 MDKGLLRALSFILALLLA----GCVFWDPNRFAAAIG 40 (93) T ss_pred HCCHHHHHHHHHHHHHHH----HHHHCCHHHHHHHHC T ss_conf 134427999999999999----999618689998726 No 28 >PRK08262 hypothetical protein; Provisional Probab=70.77 E-value=6 Score=17.42 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=27.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHHHHHCCEEEEE Q ss_conf 958899999999999999999885520858878-------999999999829819996 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFR-------EDFERQATLIVGKKIAVK 51 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k-------~~i~~~~s~~~g~~v~i~ 51 (380) ||||++++++.+++++++.+++--+.+.+.+.. +.=+..+.+++.+-+++. T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~i~~~ 60 (489) T PRK08262 3 WIRRIILGLLLLLLVLAAVLAVRTFRFKSRQLQVAAVAPVAVDEDRAAQRLSEAIRFR 60 (489) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEE T ss_conf 8999999999999999999999985267865667888876588699999997340430 No 29 >PRK06770 hypothetical protein; Provisional Probab=68.66 E-value=6.2 Score=17.33 Aligned_cols=21 Identities=10% Similarity=0.368 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 588999999999999999998 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFT 22 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~ 22 (380) ||+++++++++..++++++.+ T Consensus 1 mKk~~kwi~ii~~~~Vl~ig~ 21 (185) T PRK06770 1 MKKLFKWIGIIAGMAVLGIGV 21 (185) T ss_pred CHHHHHHHHHHHHHHHHHHHH T ss_conf 905999999999999999988 No 30 >PRK12696 flgH flagellar basal body L-ring protein; Reviewed Probab=67.41 E-value=3.1 Score=19.12 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=14.6 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~ 19 (380) ||||++.+++.+++|..++ T Consensus 1 mm~~~l~~~~~~~~L~GC~ 19 (238) T PRK12696 1 MIRKLLAASCAVLLLSGCN 19 (238) T ss_pred CHHHHHHHHHHHHHHHCCC T ss_conf 9589999999999951656 No 31 >COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane] Probab=66.34 E-value=7.5 Score=16.82 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHHHHCCE Q ss_conf 87899999999982981 Q gi|254780954|r 31 DFREDFERQATLIVGKK 47 (380) Q Consensus 31 ~~k~~i~~~~s~~~g~~ 47 (380) .|-.++-+++=+++|-. T Consensus 264 YfaE~VRqe~~~~yge~ 280 (797) T COG5009 264 YFAEMVRQEMIRRYGEE 280 (797) T ss_pred HHHHHHHHHHHHHHCHH T ss_conf 89999999999983625 No 32 >COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism] Probab=66.16 E-value=7.6 Score=16.80 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=33.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEE-EEC Q ss_conf 9588999999999999999998855208588789999999--998298199-962 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIA-VKG 52 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~-i~G 52 (380) |||-+...+.+.+++.++..++.|.++ .-|.+.+ .++-|-.|+ .+| T Consensus 1 m~~~lr~Al~~~~~l~li~G~iYPl~~------t~igq~~Fp~QAnGSli~~~dg 49 (190) T COG2156 1 MMRQLRPALVLTLVLLLITGLIYPLLV------TGIGQAAFPNQANGSLIRDGDG 49 (190) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEECCCC T ss_conf 923678999999999999999888999------9999885723368976676899 No 33 >COG5294 Uncharacterized protein conserved in bacteria [Function unknown] Probab=65.70 E-value=3.3 Score=18.94 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=13.1 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAF 21 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~ 21 (380) ||++++++.++++++.++++ T Consensus 1 MKkil~~ilall~~ii~a~~ 20 (113) T COG5294 1 MKKILIGILALLLIIIGALF 20 (113) T ss_pred CCCHHHHHHHHHHHHHHHHE T ss_conf 90439999999999986621 No 34 >pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor. Probab=64.95 E-value=7.4 Score=16.88 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=27.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHHHHHHHHHHHHHCCEEEEECCEE Q ss_conf 889999999999999999988-------55208588789999999998298199962148 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFREDFERQATLIVGKKIAVKGGIK 55 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~ 55 (380) ||+++++.+++++.+++++++ .||+.|..+. +. ....|+.++++|-+. T Consensus 6 kRl~~i~~~~~~~~~~~~Lil~al~~n~~yf~tPsEl~---~~--~~~~~~~iRvgG~V~ 60 (130) T pfam03100 6 RRLLLVLAALAALGLAVALVLYALRDNIVFFYTPSEVA---AG--KAPPGRRIRLGGLVE 60 (130) T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH---CC--CCCCCCEEEEEEEEE T ss_conf 45478999999999999999998761812998799982---57--766686899988996 No 35 >PRK11627 hypothetical protein; Provisional Probab=64.84 E-value=5.2 Score=17.80 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=13.5 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~ 19 (380) |||+++..+..++.+..++ T Consensus 1 ~mkk~~~~l~a~~lL~gCa 19 (192) T PRK11627 1 MLKKILFPLVALFMLAGCA 19 (192) T ss_pred CHHHHHHHHHHHHHHHHHC T ss_conf 9287999999999998606 No 36 >PRK09379 membrane-bound transcriptional regulator LytR; Provisional Probab=63.71 E-value=8.2 Score=16.61 Aligned_cols=25 Identities=16% Similarity=0.277 Sum_probs=15.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999998855 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPL 25 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~ 25 (380) |=||+|++++++++++++++.+..+ T Consensus 1 ~KKkil~~i~~v~~vlll~~g~~~~ 25 (303) T PRK09379 1 MKKKILFWILGIIGVLIIGGGIYAY 25 (303) T ss_pred CCCEEEHHHHHHHHHHHHHHHHHHH T ss_conf 9826603699999999999999999 No 37 >PRK10604 sensor protein RstB; Provisional Probab=63.40 E-value=8.6 Score=16.49 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=14.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999988 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV 23 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~ 23 (380) |||||+-+..+++++++.+.++ T Consensus 1 MkrLF~~~~l~~~~~~~~~~~l 22 (433) T PRK10604 1 MKKLFIQFYLLLFVCFLVMTLL 22 (433) T ss_pred CHHHHHHHHHHHHHHHHHHHHH T ss_conf 9057999999999999999999 No 38 >PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Probab=63.31 E-value=8.6 Score=16.48 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------CCHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 5889999999999999999988552------------------0858878999999999829819996 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLF------------------IDWTDFREDFERQATLIVGKKIAVK 51 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~------------------~d~~~~k~~i~~~~s~~~g~~v~i~ 51 (380) ||||+.++..+++++...+..+.+. +.-..+|..+...+....|-+|-++ T Consensus 1 mkrl~~~L~~ll~v~~L~lg~~g~~~~~~~a~~~~~~~~~~~~~~~~~~~n~aD~kl~t~~g~KIDlN 68 (144) T PRK02515 1 MKRLLSWLVRLLVVLSLLLGLLGWLGPTAQAGSAYALLDPLLSVLAAEIRNAADAKLATERGEKIDLN 68 (144) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCC T ss_conf 91799999999999999999844661366630132001432016899871568888888715640256 No 39 >TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770 This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria . . Probab=61.73 E-value=9.2 Score=16.31 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=18.8 Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHC Q ss_conf 58899----999999999999999885520 Q gi|254780954|r 2 LRRVL----IGLGFLFSVVLVGAFTVPLFI 27 (380) Q Consensus 2 mk~ll----~~~~~~lvl~~~~~~~~~~~~ 27 (380) ||++| ++++-++|++++++.+..+++ T Consensus 7 ~Kk~Lnkkri~i~~~~vll~~~gs~~~y~~ 36 (373) T TIGR00247 7 MKKVLNKKRIIILLLLVLLLIIGSILLYKI 36 (373) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 455665668999999999999988998877 No 40 >COG2832 Uncharacterized protein conserved in bacteria [Function unknown] Probab=61.28 E-value=6.5 Score=17.20 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=18.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 95889999999999999999988552 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~ 26 (380) |||.+++++|.+.+.+.+..+.+|.+ T Consensus 1 ~~r~i~i~iGfl~l~LGIiGifLPlL 26 (119) T COG2832 1 MMRIIYIILGFLSLALGIIGIFLPLL 26 (119) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 95007999999999998997607656 No 41 >PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed Probab=60.46 E-value=8.5 Score=16.53 Aligned_cols=47 Identities=28% Similarity=0.374 Sum_probs=28.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHCCEEEEECCE Q ss_conf 8899999999999999999885-------520858878999999999829819996214 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVP-------LFIDWTDFREDFERQATLIVGKKIAVKGGI 54 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~-------~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i 54 (380) ||+++++++++++.+++++++- ||+.|..+. +-....|+.+++.|-+ T Consensus 7 kRl~~v~~~~~~l~~a~~Lil~al~~ni~yFyTPsEi~-----~~~~~~~~~iRvGGlV 60 (149) T PRK13254 7 RRLLIILGALAALGLAVALVLYALRQNIVFFYTPSEVA-----EGEAPAGKRFRLGGLV 60 (149) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH-----CCCCCCCCEEEEEEEE T ss_conf 24789999999999999999999862806997889994-----3766679679998999 No 42 >PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Probab=59.65 E-value=10 Score=16.09 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=33.2 Q ss_pred HHHHHHHHHH--HHHHHHHHHHH----HHHHCCHHHHH-HHHHHHHHHHHCCEEEEE Q ss_conf 5889999999--99999999998----85520858878-999999999829819996 Q gi|254780954|r 2 LRRVLIGLGF--LFSVVLVGAFT----VPLFIDWTDFR-EDFERQATLIVGKKIAVK 51 (380) Q Consensus 2 mk~ll~~~~~--~lvl~~~~~~~----~~~~~d~~~~k-~~i~~~~s~~~g~~v~i~ 51 (380) |||+...+.+ ++.+.+.++.+ ...+++|..|- +.+.++-++.+|.+|++. T Consensus 1 ~~~~~~~ll~~~a~~l~~~~~~a~~~~~L~i~~W~~Yi~~~~i~~Fe~etGikV~~~ 57 (348) T PRK09501 1 MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYS 57 (348) T ss_pred CHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE T ss_conf 936899999999999735033543389799987100189789999999989889999 No 43 >pfam03699 UPF0182 Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins. Probab=59.45 E-value=10 Score=16.07 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----CCHH---HHHHHHHHHHH---HHHCCEEEEECCEEEEECC-CEEEEEEE Q ss_conf 889999999999999999988552-----0858---87899999999---9829819996214899736-31799942 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLF-----IDWT---DFREDFERQAT---LIVGKKIAVKGGIKIHILP-FPSVFFKD 68 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~~v~i~G~i~~~l~P-~p~i~~~~ 68 (380) |...++++.++++.+++..+.|.+ |.|| .=+++|++-+. +++|.+ +++..-++ ...++.++ T Consensus 270 ~~~~~~~~l~~~~~iv~g~i~P~~vQ~f~V~PnE~~~E~pYI~rnI~~TR~AygLd-----~i~~~~~~~~~~lt~~~ 342 (771) T pfam03699 270 RLPAIALALLVVLAILLGGVYPALVQQFVVKPNELELERPYIERNIAATRQAYGLD-----KIEEKDFPADTNLTAAD 342 (771) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC-----CEEEEECCCCCCCCHHH T ss_conf 78999999999999999999987647889888735534669999999999862987-----51798568878779999 No 44 >COG4509 Uncharacterized protein conserved in bacteria [Function unknown] Probab=58.13 E-value=11 Score=15.93 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=22.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHHHH Q ss_conf 95889999999999999999988---5520858878 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTV---PLFIDWTDFR 33 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~---~~~~d~~~~k 33 (380) ||||++...-.+++++++..... ..++...+-| T Consensus 2 ~mkrfl~~~~tLv~viV~~f~~~kl~~~~ie~~qn~ 37 (244) T COG4509 2 MMKRFLKLSDTLVVVIVFCFSFYKLLIAAIEIYQNR 37 (244) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 089999887788888889988999999999765547 No 45 >PRK00068 hypothetical protein; Validated Probab=56.05 E-value=12 Score=15.72 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----CCHH---HHHHHHHHHHH---HHHCC Q ss_conf 9999999999999999988552-----0858---87899999999---98298 Q gi|254780954|r 5 VLIGLGFLFSVVLVGAFTVPLF-----IDWT---DFREDFERQAT---LIVGK 46 (380) Q Consensus 5 ll~~~~~~lvl~~~~~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~ 46 (380) ..++++.+++..++...+.|.+ +.|| .=+++|++-+. +++|. T Consensus 284 p~i~~~l~~~~~iv~g~i~P~~vQ~f~V~PNe~~~E~pYI~rNI~aTR~AygL 336 (978) T PRK00068 284 PAIAVVLLLLSSIVVGAVWPLIVEQFSVKPNAAQKESEYISRNIDATRKAYGI 336 (978) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 89999999999999988888775136876654554257999999999997099 No 46 >PRK11029 FtsH protease regulator HflC; Provisional Probab=55.87 E-value=2 Score=20.25 Aligned_cols=82 Identities=23% Similarity=0.303 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEC------CEEEEE-CCCE-EEEEEEEEEEC Q ss_conf 588999999999999999998855208588789999999998298199962------148997-3631-79994279826 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKG------GIKIHI-LPFP-SVFFKDIRIDQ 73 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G------~i~~~l-~P~p-~i~~~~v~i~~ 73 (380) ||++++++.+++++++. ...+.++ +=++.+-.++|+.+.-.+ +-.++| +|+. .+..=|.++.. T Consensus 1 m~~~ilviii~vlv~l~---~s~yiV~------e~e~aVVlrFGk~vr~~~~~~~v~ePGLhfkiPfI~~V~~~d~Ri~~ 71 (334) T PRK11029 1 MRKSVIAIIIIVLVVLY---MSVFVVK------EGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQT 71 (334) T ss_pred CCHHHHHHHHHHHHHHH---HEEEEEC------CCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEE T ss_conf 91259999999999998---5689975------77089999669552366777643589805873754188981227997 Q ss_pred CCC-CCCEEEEEEEEEEEEH Q ss_conf 899-8760678679999870 Q gi|254780954|r 74 KED-GSFESKIEGLSMRAEF 92 (380) Q Consensus 74 ~~~-~~~~~~~~~~~v~i~l 92 (380) -+. ...+++.++..+.++. T Consensus 72 ~d~~~~~vlT~D~k~i~VD~ 91 (334) T PRK11029 72 MDNQADRFVTKEKKDLIVDS 91 (334) T ss_pred EECCCCEEEECCCCEEEEEE T ss_conf 60797268851784899855 No 47 >COG5353 Uncharacterized protein conserved in bacteria [Function unknown] Probab=55.69 E-value=7.4 Score=16.88 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=23.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHCCE Q ss_conf 9588999999999999999998855208-----5887899999999982981 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFID-----WTDFREDFERQATLIVGKK 47 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d-----~~~~k~~i~~~~s~~~g~~ 47 (380) |.||.+++++++++++++.++...+++- ...-+.+.++.+++.++.. T Consensus 1 ~Rkk~~~~i~ii~viflai~~s~~~~~~~s~~P~~~~~~qA~~~a~~~~dL~ 52 (161) T COG5353 1 MRKKHLIIIIIILVIFLAIILSIALFFWKSMKPYHEAEEQAIDLATEETDLA 52 (161) T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCE T ss_conf 9724766224688999999999999875751844216889999875134603 No 48 >PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed Probab=54.44 E-value=9.3 Score=16.29 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=10.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999988552 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~ 26 (380) ||+++++++.+++++++..+..+| T Consensus 16 kKLiiii~~~vlll~ggggg~~~~ 39 (168) T PRK05696 16 KKLIIIIVVGVLLALGGGGAAWFF 39 (168) T ss_pred CEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 332047999999999999999999 No 49 >pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown. Probab=53.10 E-value=12 Score=15.52 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=16.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 99999999999999999885520858878 Q gi|254780954|r 5 VLIGLGFLFSVVLVGAFTVPLFIDWTDFR 33 (380) Q Consensus 5 ll~~~~~~lvl~~~~~~~~~~~~d~~~~k 33 (380) .++-++|.+|++++++++.-+||.++.-. T Consensus 14 ~vLNiaI~iV~llIiiva~~lf~~~~~~~ 42 (214) T pfam07423 14 RVLNIAIGIVVVLIIIVAYQLFFPSSPSD 42 (214) T ss_pred HHHHHHHHHHHHHHHHHHHHEEECCCCCC T ss_conf 45579999999999997664023588753 No 50 >PRK13428 F0F1 ATP synthase subunit delta; Provisional Probab=52.88 E-value=13 Score=15.41 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=29.6 Q ss_pred HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEE Q ss_conf 887899999999982981999621489973631799942798 Q gi|254780954|r 30 TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRI 71 (380) Q Consensus 30 ~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i 71 (380) +.-+..+...+++.|||+|+++=+++=++.-...|.++|=-| T Consensus 387 d~Q~~RL~~~L~riYGr~v~l~v~VDP~vLGGl~VrVGDEVI 428 (445) T PRK13428 387 DAQRTRLTEVLSRIYGHPVSVQLHIDPELLGGLSIAVGDEVI 428 (445) T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCEEEEECCEEE T ss_conf 999999999999986872268634574101773898788434 No 51 >PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed Probab=52.81 E-value=10 Score=16.10 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999988552 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~ 26 (380) |++++++++++++++++..+..+| T Consensus 12 kkl~iii~~~~lll~~~g~g~~~~ 35 (159) T PRK07021 12 KSIWLILLILITLAAAAGAGYSYW 35 (159) T ss_pred CEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 604058999999999999999999 No 52 >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Probab=51.11 E-value=14 Score=15.24 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH Q ss_conf 5889999999999999999988552085887899999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQAT 41 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s 41 (380) ..|+++.+..+.++++++...+..+.-...|..|+.++.. T Consensus 9 ~~Klfl~~~~~~~~~~~~~~~~~~~~f~~~f~~y~~~~~~ 48 (467) T PRK10549 9 TGKLFLAIFATCIVLLITMHWAVRISFERGFIDYIKHGNE 48 (467) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999989999999899 No 53 >pfam02158 Neuregulin Neuregulin family. Probab=51.04 E-value=12 Score=15.71 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=27.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999999885-52085887899999999982 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVP-LFIDWTDFREDFERQATLIV 44 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~-~~~d~~~~k~~i~~~~s~~~ 44 (380) -||+|+|-||-+.|+|++++-++ -+--.-.-|.++-..+.+.+ T Consensus 6 QKRVLTITGICvALLVVGIvCVV~AYCKTKKQRKkmH~hLrQnl 49 (406) T pfam02158 6 QKRVLTITGICIALLVVGDMCVVDAYCKTKKQRKKLHDRLRQSL 49 (406) T ss_pred HHHEHHHHHHHHHHHHHHHEEEEHHHHCCHHHHHHHHHHHHHHH T ss_conf 41021131352887641023662144313888999999998653 No 54 >PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed Probab=50.56 E-value=14 Score=15.19 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=51.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECC-CEEEEEEEE---EEECCCCC Q ss_conf 58899999999999999999885520858878999999999829819996214899736-317999427---98268998 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP-FPSVFFKDI---RIDQKEDG 77 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P-~p~i~~~~v---~i~~~~~~ 77 (380) |+|++..++.++..+..+.. .+.--+.+..+..+++.+++++.-+- +|.++++..+ .|++.+..- ....+.+. T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~i~~~a~~fv~~q~~~~~--~g~v~V~~~~lD~Rl~l~~C~~~~~~~~~~~ 81 (236) T PRK07018 5 LKRFLAILALLLSPLSAAAF-AATQQSISAIQEAAEQFVEQQLAGPS--NGKVSVTVATLDPRLLLPACDQLEPSLPSNA 81 (236) T ss_pred HHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 89999999999998766663-37889999999999999998605799--9769999717897888889998602067898 Q ss_pred CCEEEEEEEEEEEEHH-H-HHCCCCCCCEEEEECCEEEEEE Q ss_conf 7606786799998702-6-5249710113899644899998 Q gi|254780954|r 78 SFESKIEGLSMRAEFL-P-LLSGEIRVFDMYIDQPHLNFYL 116 (380) Q Consensus 78 ~~~~~~~~~~v~i~l~-~-Ll~~~~~i~~i~L~~p~i~l~~ 116 (380) . .-.++++.++=- | -|+- ..--++.+.++.+...+ T Consensus 82 ~---~~g~~tV~VrC~~~~~W~~-yv~v~V~~~~~vvVa~r 118 (236) T PRK07018 82 R---LWGNVTVGVRCGGPYPWTV-YVPVRVQVTGPYVVAAR 118 (236) T ss_pred C---CCCEEEEEEECCCCCCCEE-EEEEEEEEEEEEEEEEC T ss_conf 6---5562389999299999779-99999999988999944 No 55 >PRK04792 tolB translocation protein TolB; Provisional Probab=48.80 E-value=14 Score=15.27 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=11.3 Q ss_pred EEEEEEEHHHHHCCCC Q ss_conf 7999987026524971 Q gi|254780954|r 85 GLSMRAEFLPLLSGEI 100 (380) Q Consensus 85 ~~~v~i~l~~Ll~~~~ 100 (380) ++.+++.++..++++. T Consensus 112 ~~~V~f~L~DV~~g~~ 127 (450) T PRK04792 112 KYVVNYQLVDVVRGQL 127 (450) T ss_pred EEEEEEEEEECCCCCC T ss_conf 4999999998016510 No 56 >COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Probab=48.14 E-value=16 Score=14.96 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=30.8 Q ss_pred CHHHHHHH---HHHHHHHHHHHH--HH--H---HHHCCHH-HHHHHHHHHHHHHHCCEEEEE Q ss_conf 95889999---999999999999--98--8---5520858-878999999999829819996 Q gi|254780954|r 1 MLRRVLIG---LGFLFSVVLVGA--FT--V---PLFIDWT-DFREDFERQATLIVGKKIAVK 51 (380) Q Consensus 1 ~mk~ll~~---~~~~lvl~~~~~--~~--~---~~~~d~~-~~k~~i~~~~s~~~g~~v~i~ 51 (380) |||++... .++.+++++++. .+ - ..+++|. .+.+.+.+.-++.+|.+|... T Consensus 1 m~k~~~~~~~~~~~~~~~a~~~~~~~a~a~~~~l~v~~w~gy~~~~~~~~F~k~tGi~V~~~ 62 (363) T COG0687 1 MMKKLSRRSFLALAALALAALAGAAAAAAEGKTLNVYNWGGYIDPALLKPFEKETGIKVVYD 62 (363) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE T ss_conf 94146666789999999998600045662578599964787557788998999989979995 No 57 >PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed Probab=47.23 E-value=16 Score=14.88 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHCCHHHHHHHHHHHHHHHHCCEEEEECCE Q ss_conf 889999999999999999988-------5520858878999999999829819996214 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTV-------PLFIDWTDFREDFERQATLIVGKKIAVKGGI 54 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~-------~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i 54 (380) ||+++++++++++.++.++++ .||+.|..+. .-....++.+++.|-+ T Consensus 7 ~Rl~~i~~~~~~~~~av~Lil~al~~ni~yF~TPsEv~-----~~~~~~~~~iRvGGlV 60 (156) T PRK13159 7 QRLWLVIGVLTAAALAVTLIVFALQRNMSYLFTPSQVR-----AGAAAGYQQFRLGGMV 60 (156) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECHHHHH-----CCCCCCCCEEEEEEEE T ss_conf 89999999999999999999999861827997899983-----5666789779997899 No 58 >PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Probab=47.11 E-value=16 Score=14.86 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=11.2 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999998 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFT 22 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~ 22 (380) |.+|++.+..++++++++++.+ T Consensus 1 kknkli~Imiiil~~l~l~G~~ 22 (142) T PRK07718 1 KKNKLIKIMLIILIVIALLGTA 22 (142) T ss_pred CCCCCHHHHHHHHHHHHHHHHH T ss_conf 9861066999999999999999 No 59 >COG4640 Predicted membrane protein [Function unknown] Probab=46.65 E-value=16 Score=14.82 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=24.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 9999999999999999885520858878999999999 Q gi|254780954|r 6 LIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380) Q Consensus 6 l~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380) +.++++++|+++++++..-+|-+|++....+|+.++. T Consensus 55 was~a~~lIlii~~~~fgk~fssp~~~vk~le~Ai~~ 91 (465) T COG4640 55 WASGAFILILIIILFFFGKNFSSPEAQVKILENAIEN 91 (465) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC T ss_conf 4788999999999999754038888999999998741 No 60 >PRK02693 apocytochrome f; Reviewed Probab=44.40 E-value=17 Score=14.79 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=25.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHCCEEEEE Q ss_conf 95889999999999999999988552-0858878999999999829819996 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLF-IDWTDFREDFERQATLIVGKKIAVK 51 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~-~d~~~~k~~i~~~~s~~~g~~v~i~ 51 (380) ||||.+..+.+.+++++ +.++.|-. .-|.-|-++--+--.+++||=|--+ T Consensus 1 ~~~~~l~~~~~~~~~~~-~~~~~p~~s~AYPi~AQq~yenPREAtGrIVCAN 51 (312) T PRK02693 1 LMRRSLSLILGSLLLLL-SDLSAPQAAWAYPFWAQQNYESPREATGKIVCAN 51 (312) T ss_pred CCHHHHHHHHHHHHHHH-HHHHCCCCCCCCCHHHHHCCCCCHHHCCCEEEEC T ss_conf 92136889999999998-8861676222063657534588134059689541 No 61 >PRK13430 F0F1 ATP synthase subunit delta; Provisional Probab=43.87 E-value=18 Score=14.56 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEE Q ss_conf 887899999999982981999621489973631799942798 Q gi|254780954|r 30 TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRI 71 (380) Q Consensus 30 ~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i 71 (380) +.-+..+.+.+++.+|++|+++-.++=++.-...|.++|-.| T Consensus 213 ~~Q~~~L~~~L~~~~G~~v~l~~~VDp~llGG~~i~vGd~vi 254 (271) T PRK13430 213 DEQKQRLAAALSRIYGRQIHLNSEVDPSLLGGMRVQVGDEVI 254 (271) T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCEEEEECCEEE T ss_conf 999999999999997892178856770341835998899965 No 62 >PRK00888 ftsB cell division protein FtsB; Reviewed Probab=43.45 E-value=18 Score=14.52 Aligned_cols=16 Identities=19% Similarity=0.110 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5889999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVL 17 (380) Q Consensus 2 mk~ll~~~~~~lvl~~ 17 (380) ||.+++++.++++++- T Consensus 1 Mr~l~~~L~~ll~~LQ 16 (105) T PRK00888 1 MRLLTLVLLALLVWLQ 16 (105) T ss_pred CCHHHHHHHHHHHHHH T ss_conf 9669999999999999 No 63 >pfam05540 Serpulina_VSP Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae. Probab=42.55 E-value=9.3 Score=16.27 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=20.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHCCHHHHHHHHH Q ss_conf 5889999999999999999988--------55208588789999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV--------PLFIDWTDFREDFE 37 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~--------~~~~d~~~~k~~i~ 37 (380) |||++++...++.+.-+.++.. -+++|-|++|.+.- T Consensus 1 MKK~lL~~~a~lti~~~SvFGmYG~~~dwiDFL~dgNQ~RaRmD 44 (377) T pfam05540 1 MKKFLLTALAILTIASASAFGMYGDQDDWIDFLTHGNQFRARMD 44 (377) T ss_pred CCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCEEEEEEH T ss_conf 90438999999999865661532577616443205541134321 No 64 >COG1704 LemA Uncharacterized conserved protein [Function unknown] Probab=42.01 E-value=19 Score=14.39 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 58899999999999999999885520 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFI 27 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~ 27 (380) |+++++++++++++.+.++.+.=.|+ T Consensus 1 ~~~~~i~l~vi~il~ll~~~~yN~lv 26 (185) T COG1704 1 LRRFLIILAVIVILLLLAVGGYNGLV 26 (185) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 92369999999999999999651499 No 65 >PRK11633 hypothetical protein; Provisional Probab=41.27 E-value=20 Score=14.32 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 99999999999999885520858 Q gi|254780954|r 8 GLGFLFSVVLVGAFTVPLFIDWT 30 (380) Q Consensus 8 ~~~~~lvl~~~~~~~~~~~~d~~ 30 (380) =|.|.+||++++++.+|.++|-. T Consensus 8 RLVGaiVLValaVIfLP~l~Dg~ 30 (218) T PRK11633 8 RLVGTIVLVALGVIVLPGLLDGQ 30 (218) T ss_pred HHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88979999999999321652698 No 66 >PRK03757 hypothetical protein; Provisional Probab=41.18 E-value=8.8 Score=16.44 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHCCHH Q ss_conf 58899999999999999-999885520858 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLV-GAFTVPLFIDWT 30 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~-~~~~~~~~~d~~ 30 (380) |||++++++..++++.. .+.+..|-+|++ T Consensus 1 mkk~~l~~~l~a~~~~~~~A~a~~y~iDp~ 30 (191) T PRK03757 1 MKKTLLGLTLGSLLFSAGSAVAADYKIDKE 30 (191) T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEECCC T ss_conf 904399999999986304045752788898 No 67 >pfam04076 BOF Bacterial OB fold (BOF) protein. Proteins in this family form an OB-fold. Analysis of the predicted binding site of BOF family proteins implies that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localize in the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesized for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the BOF ligand-binding site may be associated with the presence of BOF proteins in mobile genetic elements and their potential role in bacterial pathogenicity. Probab=40.79 E-value=20 Score=14.27 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=7.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 58899999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSV 15 (380) Q Consensus 2 mk~ll~~~~~~lvl 15 (380) ||++++.+++.++. T Consensus 1 MKK~~i~~~~~l~s 14 (126) T pfam04076 1 MKKLAIALASALAS 14 (126) T ss_pred CCHHHHHHHHHHHH T ss_conf 95689999999984 No 68 >COG3790 Predicted membrane protein [Function unknown] Probab=40.69 E-value=20 Score=14.26 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=20.1 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 958899999999999999999885520858878999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDF 36 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i 36 (380) |=|+.|..+.+++... ++.-.|+|||+|-..+ T Consensus 12 ~dK~~LraLSfvla~~----la~~~fwdpn~faa~~ 43 (97) T COG3790 12 MDKGPLRALSFVLAFL----LAGCVFWDPNRFAART 43 (97) T ss_pred HCCCCHHHHHHHHHHH----HHHHHHCCHHHHHHHH T ss_conf 6533078999999999----9998831867888873 No 69 >pfam11947 DUF3464 Protein of unknown function (DUF3464). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. Probab=38.59 E-value=16 Score=14.83 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=17.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9588999999999999999998855208 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFID 28 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d 28 (380) |+||+.+..|+...+-+....+..++++ T Consensus 57 M~rR~~~~~GiP~~lg~~~f~~~y~l~~ 84 (149) T pfam11947 57 MIRRIAFFSGIPTALGMAVFVVSYLLVS 84 (149) T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHEEE T ss_conf 9999999817158889999877761026 No 70 >PRK11677 cytochrome d ubiquinol oxidase subunit III; Provisional Probab=37.91 E-value=22 Score=14.00 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=18.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHH Q ss_conf 5889999999999999999988552085887-8999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDF-REDFERQATL 42 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~-k~~i~~~~s~ 42 (380) |-+++.+++.+ |-+++|+ ++.++.....- ...+++++.+ T Consensus 1 M~W~~ali~lv-vGiiIG~-~~~R~~~~~~~~q~~Le~eLe~ 40 (134) T PRK11677 1 MTWEYALIGLV-VGIIIGA-VAMRFGNRKLRQQQALQYELEK 40 (134) T ss_pred CCHHHHHHHHH-HHHHHHH-HHHHHCCCCHHHHHHHHHHHHH T ss_conf 92899999999-9999999-9999817511679999999999 No 71 >COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Probab=37.83 E-value=20 Score=14.37 Aligned_cols=22 Identities=23% Similarity=0.033 Sum_probs=10.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999988 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV 23 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~ 23 (380) +|++++++.++++++++++... T Consensus 14 ~k~~~~I~liv~ivl~~~a~~~ 35 (159) T COG1580 14 KKKSLWILLIVLIVLLALAGAG 35 (159) T ss_pred CCCEEEHHHHHHHHHHHHHHHH T ss_conf 7751122799999999999888 No 72 >TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family Probab=37.58 E-value=23 Score=13.97 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=17.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999988552 Q gi|254780954|r 5 VLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 5 ll~~~~~~lvl~~~~~~~~~~~ 26 (380) +|+++++++++++++.++.|++ T Consensus 1 ~FWi~~~~l~~~a~~~i~~Pl~ 22 (117) T TIGR03142 1 LFWIVAALLTLVALLFLLLPLL 22 (117) T ss_pred CHHHHHHHHHHHHHHHHHHHHH T ss_conf 9589999999999999999995 No 73 >PRK10002 outer membrane protein F; Provisional Probab=37.30 E-value=13 Score=15.35 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=27.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEE Q ss_conf 9588999999999999999998855208588789999999998298199962148997 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHI 58 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l 58 (380) ||||-++.++++.+++...+.++-. =..=|-.|.|.|.+..+. T Consensus 1 mMKK~~LA~ai~all~ag~a~AAeV---------------Yn~DGn~Ldl~Gr~~~~~ 43 (362) T PRK10002 1 MMKRNILAVIVPALLVAGTANAAEI---------------YNKDGNKVDLYGKAVGLH 43 (362) T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEE---------------EECCCCEEEECCEEEEEE T ss_conf 9308799999999986064417899---------------858998898738997889 No 74 >cd01725 LSm2 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. LSm2 is one of at least seven subunits that assemble onto U6 snRNA to form a seven-membered ring structure. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes. Probab=36.90 E-value=19 Score=14.46 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=25.9 Q ss_pred HHHHCCEEEEE--CCEEE-----EECCCEEEEEEEEEEECCCCCCCEEEEEEEEEE Q ss_conf 99829819996--21489-----973631799942798268998760678679999 Q gi|254780954|r 41 TLIVGKKIAVK--GGIKI-----HILPFPSVFFKDIRIDQKEDGSFESKIEGLSMR 89 (380) Q Consensus 41 s~~~g~~v~i~--G~i~~-----~l~P~p~i~~~~v~i~~~~~~~~~~~~~~~~v~ 89 (380) +...|++++++ .+..+ +.-++.-+.++++++.+++..+.+.+++++.++ T Consensus 7 k~L~g~~vtVELKN~~~i~G~L~svD~~mNi~L~nv~~~~~~~~ph~~~~~~~fIR 62 (81) T cd01725 7 KTLVGKEVTVELKNDLSIRGTLHSVDQYLNIKLTNISVTDPEKYPHMLSVKNCFIR 62 (81) T ss_pred HHHCCCEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCEEEEE T ss_conf 88279879999769949999996437221818876799788887526314259995 No 75 >COG2949 SanA Uncharacterized membrane protein [Function unknown] Probab=36.81 E-value=23 Score=13.90 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=17.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9588999999999999999998855208 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFID 28 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d 28 (380) |-||+++++.++++.+++..+++-..+. T Consensus 13 ~~rrl~~~ll~lv~~~~a~~l~~dr~i~ 40 (235) T COG2949 13 MFRRLFRILLVLVGALLATVLIADRWIS 40 (235) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999878877 No 76 >pfam09889 DUF2116 Uncharacterized protein containing a Zn-ribbon (DUF2116). This domain, found in various hypothetical archaeal proteins, has no known function. Probab=36.63 E-value=24 Score=13.88 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999988552 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~ 26 (380) |+|.-+++.++++++++..+++++| T Consensus 35 ~~~~q~i~f~i~il~i~v~~~~~ff 59 (59) T pfam09889 35 MRKSQQILFGIFILFLAVYAVLPFF 59 (59) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999999999998139 No 77 >TIGR00304 TIGR00304 conserved hypothetical protein TIGR00304; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.. Probab=35.26 E-value=25 Score=13.75 Aligned_cols=61 Identities=25% Similarity=0.271 Sum_probs=39.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH-----HHHCCEEEEECCEEEEECCCEE Q ss_conf 95889999999999999999988552085--887899999999-----9829819996214899736317 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW--TDFREDFERQAT-----LIVGKKIAVKGGIKIHILPFPS 63 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~--~~~k~~i~~~~s-----~~~g~~v~i~G~i~~~l~P~p~ 63 (380) ||+.+++.+|+.++++.+....+..-+.- +.+|.|=.+++| ....++|...| =+=+.|.|= T Consensus 1 ~~~~i~I~lG~~li~~G~~~~~lg~~l~~~~e~~reyerrrisE~~~~~k~~~~V~~~G--vV~IGPiPI 68 (93) T TIGR00304 1 ILSEILILLGIILIVIGFLLVFLGLALEAESEDEREYERRRISEKRKSDKDKEEVKYGG--VVMIGPIPI 68 (93) T ss_pred CCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEEECC--EEEECCCCE T ss_conf 98640034418999999999998654313542123454320246877677410310146--587789054 No 78 >PRK12438 hypothetical protein; Provisional Probab=34.86 E-value=25 Score=13.71 Aligned_cols=27 Identities=15% Similarity=-0.031 Sum_probs=16.7 Q ss_pred HHHHHHH-----CCHH---HHHHHHHHHHH---HHHCC Q ss_conf 9988552-----0858---87899999999---98298 Q gi|254780954|r 20 AFTVPLF-----IDWT---DFREDFERQAT---LIVGK 46 (380) Q Consensus 20 ~~~~~~~-----~d~~---~~k~~i~~~~s---~~~g~ 46 (380) ..+.|.+ |.|| .=+++|++-+. +++|. T Consensus 301 g~i~P~~vQ~f~V~PNe~~~E~pYI~rNI~aTR~AygL 338 (979) T PRK12438 301 GGLWPLLMEQFSVRPNAADVERPYIQRNIEATREAYRI 338 (979) T ss_pred HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88888653577977774554556999999999997399 No 79 >pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis. Probab=34.40 E-value=26 Score=13.67 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=31.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHCCEEEEECCE Q ss_conf 588999999999999999998855208588789999999--99829819996214 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA--TLIVGKKIAVKGGI 54 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~--s~~~g~~v~i~G~i 54 (380) ||.++..+..++++.++..++.|.++ .-|.+.+ .++-|--+..+|.+ T Consensus 1 mk~l~~al~~~~~~~vl~G~~YPl~v------tgiaq~~fp~qAnGSli~~~g~v 49 (188) T pfam02669 1 IRNLVPALRSTALLWIITGLVYPLIV------TVIGQLVFPYQANGSLITDSGQV 49 (188) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHCCCCCCCCEEEECCEE T ss_conf 91589999999999999999999999------99997756355886768389999 No 80 >pfam04415 DUF515 Protein of unknown function (DUF515). Family of hypothetical Archaeal proteins. Probab=33.94 E-value=26 Score=13.62 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=16.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH Q ss_conf 8899999999999999999885520858878 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLFIDWTDFR 33 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k 33 (380) ||++++..++.+++++..++..+++-.-.++ T Consensus 30 ~riiIga~il~iIIl~~~~~~Y~~~~~~~~q 60 (416) T pfam04415 30 KRLIIGALVLSVIILLLVFAIYYYIENKAYQ 60 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 4100689999999999999999998727789 No 81 >PRK12789 flgI flagellar basal body P-ring protein; Reviewed Probab=33.71 E-value=26 Score=13.60 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=10.1 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 958899999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSV 15 (380) Q Consensus 1 ~mk~ll~~~~~~lvl 15 (380) ||||+++++...+.+ T Consensus 1 m~~~~~~~~~~~l~~ 15 (367) T PRK12789 1 MIRRLLLAVLLALLA 15 (367) T ss_pred CHHHHHHHHHHHHHH T ss_conf 908999999999985 No 82 >COG3111 Periplasmic protein with OB-fold [Function unknown] Probab=33.63 E-value=26 Score=13.59 Aligned_cols=10 Identities=10% Similarity=0.182 Sum_probs=3.8 Q ss_pred HHHHHHHHHH Q ss_conf 5889999999 Q gi|254780954|r 2 LRRVLIGLGF 11 (380) Q Consensus 2 mk~ll~~~~~ 11 (380) ||+..+.+.+ T Consensus 1 mK~~~ia~~~ 10 (128) T COG3111 1 MKKQAIAALI 10 (128) T ss_pred CCHHHHHHHH T ss_conf 9217999999 No 83 >PRK10588 hypothetical protein; Provisional Probab=33.55 E-value=26 Score=13.58 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=19.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 958899999999999999999885520858878999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDF 36 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i 36 (380) |.|+.+..+..++.+ ..+.-.++||++|-..+ T Consensus 12 ~dK~plRaLSlilA~----~~a~~v~wdP~~fA~~~ 43 (97) T PRK10588 12 MDKRPLRALSLVMAL----LLAGCMFWDPSRFAAKT 43 (97) T ss_pred HHCCHHHHHHHHHHH----HHHHHHHCCHHHHHHHH T ss_conf 851409999999999----99999971899998760 No 84 >COG3221 PhnD ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=33.37 E-value=27 Score=13.56 Aligned_cols=50 Identities=12% Similarity=-0.022 Sum_probs=28.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--------------HCC----H---HHHHHHHHHHHHHHHCCEEEE Q ss_conf 9588999999999999999998855--------------208----5---887899999999982981999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPL--------------FID----W---TDFREDFERQATLIVGKKIAV 50 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~--------------~~d----~---~~~k~~i~~~~s~~~g~~v~i 50 (380) ||||.++..+.+.++++++....-. -+. . ...-..+++.+++.+|.+|.. T Consensus 1 m~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~gi~p~e~~~~~~~~~~pl~~~L~~~lG~~V~~ 71 (299) T COG3221 1 MKKKKLLLASAAAVLALAGCCGSSESDAPAAEDPKELRVGIVPTENPTNLIPAWAPLADYLEKELGIPVEF 71 (299) T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 94278899999999999863257745432226875359997688886878876566998988986995435 No 85 >PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Probab=32.70 E-value=27 Score=13.50 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=33.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHCCHHHHH-HHHHHHHHHHHCCEEEEE Q ss_conf 5889999999999999999988-----5520858878-999999999829819996 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV-----PLFIDWTDFR-EDFERQATLIVGKKIAVK 51 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~-----~~~~d~~~~k-~~i~~~~s~~~g~~v~i~ 51 (380) -||+|.++.....+.+.+.... ..+++|..|- +.+.++-++.+|.+|++. T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~aa~~~~Lnv~nW~~Yi~p~~i~~FeketGikV~~~ 60 (370) T PRK10682 5 NKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPDTVANFEKETGIKVVYD 60 (370) T ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEE T ss_conf 78899999999999985205664279799981676579779999999979889999 No 86 >PRK01742 tolB translocation protein TolB; Provisional Probab=32.04 E-value=28 Score=13.43 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.2 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~ 19 (380) ||||++..+..++.++..+ T Consensus 3 m~~~~~~~~~~l~~~~~~~ 21 (430) T PRK01742 3 LLKRLVSVFAVLFAVISNA 21 (430) T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 6999999999999998778 No 87 >PRK01741 cell division protein ZipA; Provisional Probab=31.49 E-value=29 Score=13.38 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=9.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5889999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVL 17 (380) Q Consensus 2 mk~ll~~~~~~lvl~~ 17 (380) +|-+|+++|+++|+++ T Consensus 3 LrlILIIvGaIAI~AL 18 (342) T PRK01741 3 LNTILIILGILALVAL 18 (342) T ss_pred CEEHHHHHHHHHHHHH T ss_conf 1254999999999999 No 88 >COG4086 Predicted secreted protein [Function unknown] Probab=30.76 E-value=29 Score=13.30 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEC Q ss_conf 588999999999999999998855208588789999999998298199962 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKG 52 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G 52 (380) ||++++..+++.+++++.++..+++ ....+...+|+++.--| T Consensus 1 m~k~~~~~~il~~i~il~lV~a~~~---------~v~~~d~t~g~~~vtlG 42 (299) T COG4086 1 MKKVRIEITILVVIAILLLVAAAYP---------EVSLADATVGRPIVTLG 42 (299) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCH---------HHHCCCCCCCCEEEEEC T ss_conf 9237888899999999985132203---------45402232045158847 No 89 >TIGR01655 yxeA_fam conserved hypothetical protein; InterPro: IPR006542 These are a family of small (about 115 amino acids) uncharacterised proteins with N-terminal signal sequences, found exclusively in Gram-positive organisms. Most genomes that have any members of this family have at least two members.. Probab=30.15 E-value=30 Score=13.24 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=12.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGA 20 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~ 20 (380) ||+.+.+|.++.+.++++. T Consensus 1 MKk~~~~Lla~i~~~~i~~ 19 (121) T TIGR01655 1 MKKVLAGLLALIVVIIIVG 19 (121) T ss_pred CHHHHHHHHHHHHHHHHHH T ss_conf 9355688999999999988 No 90 >PRK10527 hypothetical protein; Provisional Probab=30.05 E-value=30 Score=13.23 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=11.2 Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH Q ss_conf 588999-999999999999998855 Q gi|254780954|r 2 LRRVLI-GLGFLFSVVLVGAFTVPL 25 (380) Q Consensus 2 mk~ll~-~~~~~lvl~~~~~~~~~~ 25 (380) |||.++ ++|.+.+.+.+..+.+|. T Consensus 1 mkR~l~~~lG~~~v~LG~iGi~LP~ 25 (125) T PRK10527 1 MQRIILIIIGWLAVVLGTLGVVLPL 25 (125) T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9379999999999999999883778 No 91 >PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed Probab=29.83 E-value=15 Score=15.04 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=5.4 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 99999999999999988 Q gi|254780954|r 7 IGLGFLFSVVLVGAFTV 23 (380) Q Consensus 7 ~~~~~~lvl~~~~~~~~ 23 (380) ++++++++++++++++. T Consensus 22 Iii~vvvlll~~gG~~~ 38 (180) T PRK08455 22 IIIGVVVLLLLIGGVIA 38 (180) T ss_pred EEHHHHHHHHHHHHHHH T ss_conf 34999999999999999 No 92 >TIGR00859 ENaC sodium channel transporter; InterPro: IPR004724 The epithelial Na+ channel (ENaC) proteins consist of sodium channels from animals and has no recognizable homologues in other eukaryotes or bacteria. The vertebrate ENaC proteins from epithelial cells cluster tightly together on the phylogenetic tree: voltage-insensitive ENaC homologues are also found in the brain. Eleven sequenced Caenorhabditis elegans proteins, including the degenerins (IPR004726 from INTERPRO), are distantly related to the vertebrate proteins as well as to each other. At least some of the proteins in this group form part of a mechano-transducing complex for touch sensitivity. Others include the acid-sensing ion channels, ASIC1-3 that are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. Mammalian ENaC is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, have been shown to assemble to form the highly Na+-selective channel. ; GO: 0015280 amiloride-sensitive sodium channel activity, 0006814 sodium ion transport, 0016021 integral to membrane. Probab=28.75 E-value=32 Score=13.09 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=33.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEE-EEE--CCCEEEEEEE Q ss_conf 588999999999999999998855208588789999999998298199962148-997--3631799942 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIK-IHI--LPFPSVFFKD 68 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~-~~l--~P~p~i~~~~ 68 (380) |||.+|++..++.+.++. =+....+...+-++|.+. |+ +.+ +++|.||+=+ T Consensus 30 ~kr~~W~~l~L~~~~l~~--------------WQ~g~L~~~Y~sypVs~~--l~~~~s~~L~FPAVT~Cn 83 (632) T TIGR00859 30 LKRALWALLTLLALALLL--------------WQFGLLVRTYFSYPVSVS--LSEVNSDKLTFPAVTLCN 83 (632) T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHEECCEEEE--EEEEECCCCCCCCEEEEC T ss_conf 388999999999999999--------------999998732000432567--742202114787236427 No 93 >PRK03598 hypothetical protein; Provisional Probab=28.16 E-value=33 Score=13.03 Aligned_cols=44 Identities=9% Similarity=0.217 Sum_probs=24.3 Q ss_pred CCEEEEECCEEE---EECCCEEEEEEEEEEECCC---CCCCEEEEEEEEE Q ss_conf 981999621489---9736317999427982689---9876067867999 Q gi|254780954|r 45 GKKIAVKGGIKI---HILPFPSVFFKDIRIDQKE---DGSFESKIEGLSM 88 (380) Q Consensus 45 g~~v~i~G~i~~---~l~P~p~i~~~~v~i~~~~---~~~~~~~~~~~~v 88 (380) ..++++.|.+.. .+-|..+=.+..+.+.+.+ .++.+++++.-.+ T Consensus 30 ~~~~~~~g~ve~~~V~vs~~v~G~V~~v~V~eGd~Vk~Gq~La~LD~~~~ 79 (331) T PRK03598 30 DNGLTLYGNVDIRTVNLSFRVGGRLASLAVDEGDAVKAGQVLGELDHAPY 79 (331) T ss_pred CCCEEEEEEEEEEEEEECCCCCEEEEEEECCCCCEECCCCEEEEECCHHH T ss_conf 88603579999999999132775999998689798779988999880899 No 94 >PRK04335 cell division protein ZipA; Provisional Probab=27.84 E-value=33 Score=13.00 Aligned_cols=16 Identities=50% Similarity=0.497 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 5889999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVL 17 (380) Q Consensus 2 mk~ll~~~~~~lvl~~ 17 (380) +|-+|+++|+++|+++ T Consensus 4 LrlILIIvGaIAIiAL 19 (319) T PRK04335 4 LRFVLIVVGALAIAAL 19 (319) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 4029999999999999 No 95 >PRK05089 cytochrome C oxidase assembly protein; Provisional Probab=27.62 E-value=33 Score=12.97 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=16.3 Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCE Q ss_conf 889999999999-999999988552085887899999999982981 Q gi|254780954|r 3 RRVLIGLGFLFS-VVLVGAFTVPLFIDWTDFREDFERQATLIVGKK 47 (380) Q Consensus 3 k~ll~~~~~~lv-l~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~ 47 (380) ||+++.+..+.+ ++.+++.++|++ +..=+.+|.. T Consensus 10 ~~~~~~L~~v~v~Mfgf~fA~VPLY-----------~~fC~vTG~~ 44 (186) T PRK05089 10 RKLVFKLLLVVVGMFGFGFALVPLY-----------DVFCEVTGIN 44 (186) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHCCC T ss_conf 8999999999999998887365789-----------9999982888 No 96 >COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Probab=27.45 E-value=34 Score=12.96 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=18.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 95889999999999999999988552085 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDW 29 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~ 29 (380) .|||+++++..+++++++++....+++-- T Consensus 8 v~~kvl~~~~~i~aal~~~~~~~~~~il~ 36 (295) T COG3322 8 VSKKVLIILLAIFAALTAALGGASYNILL 36 (295) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89899999999999999999999999999 No 97 >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Probab=27.43 E-value=34 Score=12.95 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=39.4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCC---CC Q ss_conf 958899999999999999999885520858878999999999829819996214899736317999427982689---98 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKE---DG 77 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~---~~ 77 (380) |.||++.++..++++++ +++++.+ -|..|+.. -.=.+-.|.|++ +.+-|..+=.+..|.+.+.+ .+ T Consensus 4 ~~rk~~r~~i~i~~v~~-~~~~~~~--~w~~~~~~-------p~TddAyV~a~i-v~Vsp~VsG~V~eV~V~dnq~VkkG 72 (310) T PRK10559 4 LTRKISRTAITVVLVIL-AFIAIFN--AWVYYTES-------PWTRDARFSADV-VAIAPDVSGLITQVNVHDNQLVKKG 72 (310) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHCCC-------CCCCCEEEEEEE-EEEECCCCEEEEEEECCCCCEECCC T ss_conf 88999999999999999-9999999--99862688-------516773898579-9993667469999991794987699 Q ss_pred CCEEEEEEEEEE Q ss_conf 760678679999 Q gi|254780954|r 78 SFESKIEGLSMR 89 (380) Q Consensus 78 ~~~~~~~~~~v~ 89 (380) +.++++|.-... T Consensus 73 dvL~~ID~~~y~ 84 (310) T PRK10559 73 QVLFTIDQPRYQ 84 (310) T ss_pred CEEEEECCHHHH T ss_conf 889998761799 No 98 >COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones] Probab=26.76 E-value=35 Score=12.88 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=48.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHCCEEEEECCEEEE-ECCCEEEEEEEEEEECCCCCC Q ss_conf 8899999999999999999885520858---878999999999829819996214899-736317999427982689987 Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGAFTVPLFIDWT---DFREDFERQATLIVGKKIAVKGGIKIH-ILPFPSVFFKDIRIDQKEDGS 78 (380) Q Consensus 3 k~ll~~~~~~lvl~~~~~~~~~~~~d~~---~~k~~i~~~~s~~~g~~v~i~G~i~~~-l~P~p~i~~~~v~i~~~~~~~ 78 (380) +|+.+++++++.+.++..+++.- ++.| -|-|.--.+.+...|..+++.|=+.-. +--.|.-.-=.+.+.+ . . T Consensus 7 ~Rl~~il~~~a~l~~a~~l~Lya-l~~ni~~fy~Psel~~~~~~~G~rlR~GGlV~~GSv~R~~~~~~v~F~vtD--~-~ 82 (153) T COG2332 7 KRLWIILAGLAGLALAVGLVLYA-LRSNIDYFYTPSELLEGKVETGQRLRLGGLVEAGSVQRDPGSLKVSFVVTD--G-N 82 (153) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEECHHHHCCCCCCCCCEEEEEEEEEECEEEECCCCCEEEEEEEC--C-C T ss_conf 14899999999999999998764-203750898779962564567858887006862458736997379999945--8-7 Q ss_pred CEEEEEEEEEEEE-HH-HHHC-CCCCCCEEEEECCEEE Q ss_conf 6067867999987-02-6524-9710113899644899 Q gi|254780954|r 79 FESKIEGLSMRAE-FL-PLLS-GEIRVFDMYIDQPHLN 113 (380) Q Consensus 79 ~~~~~~~~~v~i~-l~-~Ll~-~~~~i~~i~L~~p~i~ 113 (380) ..+.|... .+ .||+ |+-.+.+=.+.++.+. T Consensus 83 -----~~v~V~Y~GiLPDLFREGQgVVa~G~~~~~~~f 115 (153) T COG2332 83 -----KSVTVSYEGILPDLFREGQGVVAEGQLQGGGVF 115 (153) T ss_pred -----CEEEEEEECCCCHHHHCCCEEEEEEEECCCCEE T ss_conf -----148999843583566168838999886689778 No 99 >PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional Probab=26.24 E-value=35 Score=12.82 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=14.6 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 95889999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGA 20 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~ 20 (380) |||+.|+.+..++-+.+.+. T Consensus 1 ~~~~~~~~l~~~f~~~~~a~ 20 (104) T PRK10287 1 MFKKGLLALALVFSLPVFAA 20 (104) T ss_pred CCHHHHHHHHHHHHCHHHHC T ss_conf 92447999999995655415 No 100 >pfam11309 DUF3112 Protein of unknown function (DUF3112). This eukaryotic family of proteins has no known function. Probab=25.93 E-value=36 Score=12.79 Aligned_cols=39 Identities=10% Similarity=0.108 Sum_probs=24.7 Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 58899999999999-9999998855208588789999999 Q gi|254780954|r 2 LRRVLIGLGFLFSV-VLVGAFTVPLFIDWTDFREDFERQA 40 (380) Q Consensus 2 mk~ll~~~~~~lvl-~~~~~~~~~~~~d~~~~k~~i~~~~ 40 (380) |+-+...+++++++ ++.+.+..-++.|++.++..-.-|. T Consensus 13 ~~~ly~~v~~~lim~vit~~v~~~ytL~~~~~~~~r~~~~ 52 (160) T pfam11309 13 MILLYLLVAGVLIMTVITSAVPYLYTLSEHTYRQDRDVVL 52 (160) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHH T ss_conf 9999999999999999998655425668999999899999 No 101 >PRK00523 hypothetical protein; Provisional Probab=25.76 E-value=36 Score=12.77 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 99999999999999999885520858878999999999 Q gi|254780954|r 5 VLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380) Q Consensus 5 ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380) +.+++++++.+++ ..++.+|+. |.++++++.+ T Consensus 5 l~iglgiil~li~--G~~~Gff~a----rk~~~k~lk~ 36 (73) T PRK00523 5 LILGLGIPLSLIV--GGIIGYFVS----KKYFKKQLRE 36 (73) T ss_pred HHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHH T ss_conf 7659989999999--999999999----9999998866 No 102 >pfam03866 HAP Hydrophobic abundant protein (HAP). Expression of HAP is thought to be developmentally regulated and possibly involved in spherule cell wall formation. Probab=25.68 E-value=36 Score=12.76 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=11.3 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 95889999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVL 17 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~ 17 (380) |||.+|+.++...++.+ T Consensus 1 mmkyifialc~faival 17 (167) T pfam03866 1 MMKYIFIALCFFAIVAL 17 (167) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 91358999999999999 No 103 >pfam07234 DUF1426 Protein of unknown function (DUF1426). This family consists of several Banana bunchy top virus proteins of around 120 residues in length. One member is annotated as a movement protein whereas most other family members are hypothetical. The function of this family is unknown. Probab=25.49 E-value=37 Score=12.74 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 99999999999999998855208588789999999 Q gi|254780954|r 6 LIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQA 40 (380) Q Consensus 6 l~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~ 40 (380) ++.+|.+++.+-+.++++.+++.-..|-..+.+.+ T Consensus 15 FLFf~AIFiAItIlYILL~lLfEvPkYIK~~Vryl 49 (117) T pfam07234 15 FLFFGAIFIAITILYILLVLLFEVPKYIKGLVRYL 49 (117) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999996089999999999 No 104 >PRK01844 hypothetical protein; Provisional Probab=24.54 E-value=38 Score=12.63 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=11.1 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 999885520858878999999999 Q gi|254780954|r 19 GAFTVPLFIDWTDFREDFERQATL 42 (380) Q Consensus 19 ~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380) +.+++.+|+ -|.++++++.+ T Consensus 16 ~G~~~Gffi----aRk~m~~ylk~ 35 (72) T PRK01844 16 AGVALGFFI----ARKYMMNYLQK 35 (72) T ss_pred HHHHHHHHH----HHHHHHHHHHH T ss_conf 999999999----99999998866 No 105 >PRK03002 prsA peptidylprolyl isomerase; Reviewed Probab=24.47 E-value=38 Score=12.62 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=14.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHH Q ss_conf 958899999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAF 21 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~ 21 (380) |+|++++++..++.++.+++. T Consensus 1 mkkK~i~~~~~~~svl~LaaC 21 (285) T PRK03002 1 MRGKHIFIITALISILMLSAC 21 (285) T ss_pred CCHHHHHHHHHHHHHHHHHHH T ss_conf 960189999999999999984 No 106 >PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed Probab=24.09 E-value=15 Score=15.06 Aligned_cols=20 Identities=20% Similarity=0.032 Sum_probs=6.8 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999988552 Q gi|254780954|r 7 IGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 7 ~~~~~~lvl~~~~~~~~~~~ 26 (380) +++++++++++++..+..+| T Consensus 27 iIii~~~vlll~gggg~~f~ 46 (167) T PRK12785 27 IIIAAAAVLLLGGGGGGWFF 46 (167) T ss_pred EEEHHHHHHHHHHHHHHEEE T ss_conf 76199999999731140146 No 107 >COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism] Probab=22.56 E-value=42 Score=12.40 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=21.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHH Q ss_conf 9588999999999999999998855208588----789999999998 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTD----FREDFERQATLI 43 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~----~k~~i~~~~s~~ 43 (380) ||||..+.+..+.+++ ++.++|+++..+. --.+.|..+++. T Consensus 1 m~kk~~~~ll~i~~i~--~l~li~~~~~~~ge~gGaD~~Ae~~I~ei 45 (97) T COG1930 1 MSKKHMLNLLAIGIIL--ALPLIPFSFVTDGEFGGADGEAEEVITEI 45 (97) T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHEECCCCCCCCCCCHHHHHHHHH T ss_conf 9357999999999999--99888841124422158762566789874 No 108 >pfam06649 DUF1161 Protein of unknown function (DUF1161). This family consists of several short, hypothetical bacterial proteins of unknown function. Probab=22.46 E-value=42 Score=12.39 Aligned_cols=38 Identities=16% Similarity=0.430 Sum_probs=20.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 588999999999999999998855208588789999999998 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI 43 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~ 43 (380) |||.++..+.+++. +.+++.+ -+-+..|.+|++.+... T Consensus 1 Mkk~~l~~~l~lla--~~alAA~--~sCE~lk~eI~~KI~~n 38 (75) T pfam06649 1 MKRLLLAVALLLLA--ASALAAP--KSCEELKAEIEAKIQAN 38 (75) T ss_pred CCHHHHHHHHHHHH--HHHHHCC--CCHHHHHHHHHHHHHHC T ss_conf 92469999999971--3453155--88899999999999976 No 109 >pfam05842 Euplotes_phero Euplotes octocarinatus mating pheromone protein. This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate Euplotes octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells. Probab=22.42 E-value=42 Score=12.38 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLV 18 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~ 18 (380) ||-+++||+|+.|.-.+ T Consensus 1 MKAIFIILAILMVTQAF 17 (153) T pfam05842 1 MKAIFIILAILMVTQAF 17 (153) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 91189999999999999 No 110 >TIGR01060 eno phosphopyruvate hydratase; InterPro: IPR000941 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate , . In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer . The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex. Probab=22.33 E-value=42 Score=12.37 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=15.3 Q ss_pred CEEEEEE-CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCE Q ss_conf 4899998-88888055555556766552365348972878 Q gi|254780954|r 110 PHLNFYL-SSKGVSNWFQRKSTMDMIHNVILEKIHVKGGR 148 (380) Q Consensus 110 p~i~l~~-~~~G~~n~~~~~~~~~~~~~~~l~~i~i~~g~ 148 (380) |.+.++. ..+|..--+..|+-.+.+.+ +-+.++|+. T Consensus 16 PTVev~V~l~~G~~G~A~VPSGASTG~~---EAlELRD~D 52 (430) T TIGR01060 16 PTVEVEVILEDGTFGRAAVPSGASTGER---EALELRDGD 52 (430) T ss_pred CEEEEEEEECCCCEEEEECCCCCCCCCC---EEEEEECCC T ss_conf 7289999976897688853678764222---045564557 No 111 >COG3763 Uncharacterized protein conserved in bacteria [Function unknown] Probab=22.03 E-value=43 Score=12.34 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 999999999885520858878999999999 Q gi|254780954|r 13 FSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380) Q Consensus 13 lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380) .++.+++.+++.+|+. |.++++++.+ T Consensus 10 ivl~ll~G~~~G~fia----rk~~~k~lk~ 35 (71) T COG3763 10 IVLALLAGLIGGFFIA----RKQMKKQLKD 35 (71) T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH T ss_conf 9999999999999999----9999999744 No 112 >PRK13697 cytochrome c6; Provisional Probab=21.81 E-value=43 Score=12.31 Aligned_cols=18 Identities=6% Similarity=0.181 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 588999999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~ 19 (380) |||++..+...+++++++ T Consensus 1 Mk~l~~~~l~~~~~~~~~ 18 (111) T PRK13697 1 MKKILKLVLLTLLLLTFA 18 (111) T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 978999999999999998 No 113 >PRK02889 tolB translocation protein TolB; Provisional Probab=21.61 E-value=44 Score=12.28 Aligned_cols=19 Identities=5% Similarity=0.148 Sum_probs=14.0 Q ss_pred CHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~ 19 (380) ||+||...+.+.++|++++ T Consensus 3 ~~~~l~~~~~~~~~l~~~~ 21 (430) T PRK02889 3 LMTKLGLRALVASCLIAAG 21 (430) T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 7998999999999998621 No 114 >pfam09911 DUF2140 Uncharacterized protein conserved in bacteria (DUF2140). This domain, found in various hypothetical prokaryotic proteins, has no known function. Probab=21.17 E-value=19 Score=14.45 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=8.7 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 001475432355444335675566424 Q gi|254780954|r 325 MHDLNETDFFEEEEKKNKNDDLKKDDI 351 (380) Q Consensus 325 ~~d~n~~~~~~~~~~~~~~~~~~~~~~ 351 (380) .+++++-...+.-.-+.++.++..+++ T Consensus 154 ~l~L~~~~~~~g~~~kA~~iDL~~D~i 180 (187) T pfam09911 154 YLRLSEIKLKNGLYVKAKKIDLVNDEI 180 (187) T ss_pred EEEHHHCCCCCCCEEEEEEEECCCCEE T ss_conf 999666646799389999960688869 No 115 >COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion] Probab=20.89 E-value=45 Score=12.19 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=6.6 Q ss_pred EEEEEEHHHHHCCCCC Q ss_conf 9999870265249710 Q gi|254780954|r 86 LSMRAEFLPLLSGEIR 101 (380) Q Consensus 86 ~~v~i~l~~Ll~~~~~ 101 (380) +.=.+-+.|++-|++. T Consensus 93 l~G~iv~~pi~~GEPV 108 (276) T COG3745 93 LAGRIVRVPIGAGEPV 108 (276) T ss_pred CCCCEEEECCCCCCCC T ss_conf 2682586213589853 No 116 >PRK02710 plastocyanin; Provisional Probab=20.61 E-value=46 Score=12.16 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=26.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECC-EEEEECCC-EEEEEEEE Q ss_conf 95889999999999999999988552085887899999999982981999621-48997363-17999427 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGG-IKIHILPF-PSVFFKDI 69 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~-i~~~l~P~-p~i~~~~v 69 (380) ||||+-..++.++++++..++..... .+--.+|.+.+| =.+.+-|. .+|..+|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a---------------~A~~~~v~m~~d~g~m~FsP~~ltI~~GDT 56 (119) T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSA---------------SAATVEVKMGSDAGMLAFEPSTLTIKAGDT 56 (119) T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC---------------CCCEEEEEECCCCCCEEEECCEEEECCCCE T ss_conf 90688999999999999998125702---------------025289997578852798489889899999 No 117 >PRK12450 foldase protein PrsA; Reviewed Probab=20.46 E-value=46 Score=12.14 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHH Q ss_conf 958899999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAF 21 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~ 21 (380) +||++++++.+++.++.+++- T Consensus 3 ~mKK~~~~~~~~~svl~LaAC 23 (309) T PRK12450 3 QMNKLITGVVTLATVVTLSAC 23 (309) T ss_pred HHHHHHHHHHHHHHHHHHHHH T ss_conf 799999999999999999860 No 118 >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] Probab=20.31 E-value=20 Score=14.35 Aligned_cols=25 Identities=16% Similarity=0.493 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999999999999988552 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLF 26 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~ 26 (380) |||.++++.++|+.+++.+.+...+ T Consensus 1 MKK~f~~Ivill~g~~i~g~i~~~~ 25 (288) T COG4814 1 MKKVFFSIVILLAGALILGWIIGIF 25 (288) T ss_pred CCEEEEEHHHHHHHHHHHHHHEEEE T ss_conf 9517876069999999976521355 No 119 >PRK10386 curli assembly protein CsgE; Provisional Probab=20.29 E-value=47 Score=12.12 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=34.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHCCH------HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEE Q ss_conf 5889999999999999999988--------552085------88789999999998298199962148997363179994 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV--------PLFIDW------TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFK 67 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~--------~~~~d~------~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~ 67 (380) |||.+...+..++++.++-+.. .+++|- .+|--.+.......++-+++|.-....++....+|..+ T Consensus 1 m~r~~~~~~~~~~l~~~~~~~~a~~E~Ei~Gli~DrTiSr~GhdFY~~Fs~~~rs~~~~NLtVkErp~ar~GS~itv~~~ 80 (131) T PRK10386 1 MKRYLRWIVAAELLFAAGNLHAAEVEVEVPGLLTDHTVSSIGHDFYRAFSDKWESRYTGNLTINERPSARWGSWITITVN 80 (131) T ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEC T ss_conf 91799999999999974773133544214747761325551168999999998545898568975426766668999984 Q ss_pred EEEEE Q ss_conf 27982 Q gi|254780954|r 68 DIRID 72 (380) Q Consensus 68 ~v~i~ 72 (380) +=.|. T Consensus 81 ~kvIY 85 (131) T PRK10386 81 QDVIY 85 (131) T ss_pred CEEEE T ss_conf 76889 No 120 >pfam00820 Lipoprotein_1 Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain. Probab=20.23 E-value=41 Score=12.46 Aligned_cols=18 Identities=17% Similarity=0.748 Sum_probs=12.9 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 588999999999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVG 19 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~ 19 (380) ||+.|+++|.++.+|.+. T Consensus 1 mkkyllgi~LilaliaCk 18 (273) T pfam00820 1 MKKYLLGIGLILALIACK 18 (273) T ss_pred CCEEEHHHHHHHHHHHHH T ss_conf 944311589999998760 Done!