HHsearch alignment for GI: 254780954 and conserved domain: pfam05170

>pfam05170 AsmA AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.

Probab=100.00  E-value=1.1e-40  Score=259.97  Aligned_cols=170  Identities=18%  Similarity=0.316  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCEE
Q ss_conf             58899999999999999999885520858878999999999829819996214899736317999427982689987606
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFES   81 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~~   81 (380)
T Consensus         1 Mk~~lk~l~~i~~~lv~~~~~l~~~~d~n~~k~~i~~~v~~~TGr~l~i~G~i~ls~fP~~~v~l~~vsl~n~~~~~~~~   80 (537)
T pfam05170         1 MKKALKILLIILIVLLLLIIALIALFDPNYFKPTIQQKVSAASGRPLQIDGDIGRSLFPWPHLSLENVTLGSPGGPATLV   80 (537)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCEEEEEEEEEECCCCCCCCE
T ss_conf             94589999999999999999860752889979999999999889859994765689888874999002885899986526


Q ss_pred             EEEEEEEEEEHHHHHCCCCCCCEEEEECCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCEEEEEEEE
Q ss_conf             786799998702652497101138996448999988888805555555-----------------676655236534897
Q gi|254780954|r   82 KIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWFQRKS-----------------TMDMIHNVILEKIHV  144 (380)
Q Consensus        82 ~~~~~~v~i~l~~Ll~~~~~i~~i~L~~p~i~l~~~~~G~~n~~~~~~-----------------~~~~~~~~~l~~i~i  144 (380)
T Consensus        81 ~~~~~~~~v~l~pLL~g~v~i~~v~L~~~~i~L~r~~~G~~Nw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i  160 (537)
T pfam05170        81 SVEQVDIWLSPLPLLTKQLQIDSILLDGASLALTRLTEGNPNWDDLLQLRDNALPNAPTQQPQPTWDRPAWSIDISAIQV  160 (537)
T ss_pred             EEEEEEEEEEEHHHHCCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             83489999876898589538959998476799886787766854335545544567654445655667566300375899


Q ss_pred             ECCEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf             287899985688817876201566215
Q gi|254780954|r  145 KGGRIKIIDQESDQVYFLSDLNLQISA  171 (380)
Q Consensus       145 ~~g~i~~~D~~~~~~~~i~~i~l~l~~  171 (380)
T Consensus       161 ~~g~l~~~d~~~~~~~~~~~l~l~~~~  187 (537)
T pfam05170       161 SNGVVTWDDEASKKVLNDIDLQLQVDP  187 (537)
T ss_pred             ECCEEEEECCCCCEEEEEECCEEECCC
T ss_conf             778899734567616886131240363