Query gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 380 No_of_seqs 168 out of 631 Neff 9.3 Searched_HMMs 33803 Date Wed Jun 1 20:03:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3din_C Preprotein translocase 55.9 3.4 0.0001 18.5 0.5 42 1-43 14-55 (183) 2 >1w5c_T Cytochrome C-550; phot 54.1 3.1 9.1E-05 18.8 0.0 22 1-22 1-22 (163) 3 >3dl8_G Preprotein translocase 53.1 9 0.00026 16.0 2.2 44 1-45 14-57 (181) 4 >2a3m_A COG3005: nitrate/TMAO 51.2 3.2 9.6E-05 18.6 -0.3 21 2-22 1-21 (83) 5 >3bmx_A Uncharacterized lipopr 41.0 10 0.00029 15.7 0.9 40 2-42 1-41 (419) 6 >1p99_A Hypothetical protein P 26.8 19 0.00055 14.1 0.4 23 28-50 47-69 (183) 7 >2qgu_A Probable signal peptid 26.8 28 0.00084 13.0 1.3 20 1-20 1-20 (155) 8 >2zjs_Y Preprotein translocase 26.0 31 0.00091 12.8 2.4 35 2-37 4-38 (184) 9 >2amy_A PMM 2, phosphomannomut 23.6 34 0.001 12.5 3.6 31 31-61 63-96 (104) 10 >3lay_A Zinc resistance-associ 19.7 26 0.00077 13.2 0.0 41 2-42 25-65 (175) No 1 >>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183) Probab=55.87 E-value=3.4 Score=18.49 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=30.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999998855208588789999999998 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI 43 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~ 43 (380) +.+|++++++++++..++..+-+| .+|.+.+++.++.+.... T Consensus 14 l~~Kil~Tl~il~iyr~g~~Iplp-Gv~~~~~~~~~~~~~~~~ 55 (183) T 3din_C 14 LRDRIIFTFLALIVFRMGIYIPVP-GLNLEAWGEIFRRIAETA 55 (183) T ss_dssp CSSHHHHHHHHHHHHHHHHSCSSC-CCCC-------------- T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHCC T ss_conf 999999999999999972528899-859899999999754024 No 2 >>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} (T:) Probab=54.14 E-value=3.1 Score=18.75 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=13.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9588999999999999999998 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFT 22 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~ 22 (380) ||||+++++..++++++..... T Consensus 1 M~k~~~~~~~~~~~~~~~~~~~ 22 (163) T 1w5c_T 1 MLKKCVWLAVALCLCLWQFTMG 22 (163) T ss_dssp ---------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHHH T ss_conf 9535999999999999999971 No 3 >>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181) Probab=53.13 E-value=9 Score=16.00 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=30.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC Q ss_conf 958899999999999999999885520858878999999999829 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVG 45 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g 45 (380) +.||++++++++++..++..+-+| .+|.+.++......-....+ T Consensus 14 l~~Kil~Tl~il~iyrlg~~Iplp-gvd~~~~~~~~~~~~~~~~~ 57 (181) T 3dl8_G 14 LRQKFIFTLLMFVIYRLGSHIPIP-GINPEALRDFLKAFEGSVFA 57 (181) T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSC-CCC---------------CC T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHCCCCHHH T ss_conf 999999999999999985228899-86999999998743553899 No 4 >>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83) Probab=51.24 E-value=3.2 Score=18.62 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=13.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 588999999999999999998 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFT 22 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~ 22 (380) |||+++++++++++..+++.. T Consensus 1 Mkk~li~~~~~~l~~~~~~~~ 21 (83) T 2a3m_A 1 MRKSLFAVMVLALVAAFALPV 21 (83) T ss_dssp --------------------- T ss_pred CCHHHHHHHHHHHHHHHHHHH T ss_conf 906899999999999998566 No 5 >>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419) Probab=40.99 E-value=10 Score=15.72 Aligned_cols=40 Identities=8% Similarity=-0.239 Sum_probs=23.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHH Q ss_conf 5889999999999999999988552085-8878999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDW-TDFREDFERQATL 42 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~-~~~k~~i~~~~s~ 42 (380) |||++..+..++++..+.....|+. || .....+++..+++ T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~ 41 (419) T 3bmx_A 1 MRPVFPLILSAVLFLSCFFGARQTE-ASASKRAIDANQIVNR 41 (419) T ss_dssp --------------------------CHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHC T ss_conf 9008999999999999984434343-5654240039999980 No 6 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=26.82 E-value=19 Score=14.10 Aligned_cols=23 Identities=0% Similarity=-0.176 Sum_probs=9.7 Q ss_pred CHHHHHHHHHHHHHHHHCCEEEE Q ss_conf 85887899999999982981999 Q gi|254780954|r 28 DWTDFREDFERQATLIVGKKIAV 50 (380) Q Consensus 28 d~~~~k~~i~~~~s~~~g~~v~i 50 (380) .|...-..+.+..-+..|.+|.+ T Consensus 47 ~~~~~~~~~v~~~~kk~Gi~Ve~ 69 (183) T 1p99_A 47 SNDTKAWEKVKELAKKDDIDVEI 69 (183) T ss_dssp SSCCHHHHHHHHHHGGGTCCEEE T ss_pred CCCHHHHHHHHHHHHHCCCEEEE T ss_conf 98589999999999974987999 No 7 >>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000} (A:1-117,A:174-211) Probab=26.78 E-value=28 Score=13.03 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=12.5 Q ss_pred CHHHHHHHHHHHHHHHHHHH Q ss_conf 95889999999999999999 Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGA 20 (380) Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~ 20 (380) .|||++.++..++++++... T Consensus 1 ~Mkr~~~~l~~~~ll~~~~~ 20 (155) T 2qgu_A 1 XFKKLLHSLVAGLTFVAAVA 20 (155) T ss_dssp -------------------- T ss_pred CHHHHHHHHHHHHHHHHHHH T ss_conf 95899999999999999984 No 8 >>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195) Probab=25.97 E-value=31 Score=12.79 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 588999999999999999998855208588789999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFE 37 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~ 37 (380) -||++++++++++..++..+-+| .+|.+.++.... T Consensus 4 ~~Ki~~Tl~~l~i~rlg~~Iplp-Gi~~~~~~~~~~ 38 (184) T 2zjs_Y 4 RQRVLFTLLVLAAYRLGAFIPTP-GVDLDKIQEFLR 38 (184) T ss_dssp HHHHHHHHHHHHHHHHHTTCBCT-TBCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH T ss_conf 99999999999999996238899-869999999987 No 9 >>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, HAD superfamily, jaecken disease; 2.09A {Homo sapiens} (A:90-193) Probab=23.63 E-value=34 Score=12.53 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=24.9 Q ss_pred HHHHHHHHHHHHHH---CCEEEEECCEEEEECCC Q ss_conf 87899999999982---98199962148997363 Q gi|254780954|r 31 DFREDFERQATLIV---GKKIAVKGGIKIHILPF 61 (380) Q Consensus 31 ~~k~~i~~~~s~~~---g~~v~i~G~i~~~l~P~ 61 (380) ..|..+.+.+.+.. |....|+|.|++.+||. T Consensus 63 ~iR~k~v~~L~~~F~~~gL~~SIGGQISfDvFP~ 96 (104) T 2amy_A 63 NIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPD 96 (104) T ss_dssp CHHHHHHHHHHHHTTTSCEEEEEETTTEEEEEET T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC T ss_conf 5568999999987434550688538974333147 No 10 >>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:) Probab=19.70 E-value=26 Score=13.22 Aligned_cols=41 Identities=15% Similarity=-0.073 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 58899999999999999999885520858878999999999 Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380) Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380) ||+.++++..+++++++++.....+..+....+.......+ T Consensus 25 Mk~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (175) T 3lay_A 25 MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGG 65 (175) T ss_dssp ----------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 66899999999999999973358886436689899878888 Done!