Query         gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 380
No_of_seqs    168 out of 631
Neff          9.3 
Searched_HMMs 33803
Date          Wed Jun  1 20:03:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3din_C Preprotein translocase  55.9     3.4  0.0001   18.5   0.5   42    1-43     14-55  (183)
  2 >1w5c_T Cytochrome C-550; phot  54.1     3.1 9.1E-05   18.8   0.0   22    1-22      1-22  (163)
  3 >3dl8_G Preprotein translocase  53.1       9 0.00026   16.0   2.2   44    1-45     14-57  (181)
  4 >2a3m_A COG3005: nitrate/TMAO   51.2     3.2 9.6E-05   18.6  -0.3   21    2-22      1-21  (83)
  5 >3bmx_A Uncharacterized lipopr  41.0      10 0.00029   15.7   0.9   40    2-42      1-41  (419)
  6 >1p99_A Hypothetical protein P  26.8      19 0.00055   14.1   0.4   23   28-50     47-69  (183)
  7 >2qgu_A Probable signal peptid  26.8      28 0.00084   13.0   1.3   20    1-20      1-20  (155)
  8 >2zjs_Y Preprotein translocase  26.0      31 0.00091   12.8   2.4   35    2-37      4-38  (184)
  9 >2amy_A PMM 2, phosphomannomut  23.6      34   0.001   12.5   3.6   31   31-61     63-96  (104)
 10 >3lay_A Zinc resistance-associ  19.7      26 0.00077   13.2   0.0   41    2-42     25-65  (175)

No 1  
>>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183)
Probab=55.87  E-value=3.4  Score=18.49  Aligned_cols=42  Identities=19%  Similarity=0.197  Sum_probs=30.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999998855208588789999999998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLI   43 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~   43 (380)
                      +.+|++++++++++..++..+-+| .+|.+.+++.++.+....
T Consensus        14 l~~Kil~Tl~il~iyr~g~~Iplp-Gv~~~~~~~~~~~~~~~~   55 (183)
T 3din_C           14 LRDRIIFTFLALIVFRMGIYIPVP-GLNLEAWGEIFRRIAETA   55 (183)
T ss_dssp             CSSHHHHHHHHHHHHHHHHSCSSC-CCCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHCC
T ss_conf             999999999999999972528899-859899999999754024


No 2  
>>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} (T:)
Probab=54.14  E-value=3.1  Score=18.75  Aligned_cols=22  Identities=14%  Similarity=-0.011  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9588999999999999999998
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFT   22 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~   22 (380)
                      ||||+++++..++++++.....
T Consensus         1 M~k~~~~~~~~~~~~~~~~~~~   22 (163)
T 1w5c_T            1 MLKKCVWLAVALCLCLWQFTMG   22 (163)
T ss_dssp             ----------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9535999999999999999971


No 3  
>>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181)
Probab=53.13  E-value=9  Score=16.00  Aligned_cols=44  Identities=11%  Similarity=0.147  Sum_probs=30.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
Q ss_conf             958899999999999999999885520858878999999999829
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVG   45 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g   45 (380)
                      +.||++++++++++..++..+-+| .+|.+.++......-....+
T Consensus        14 l~~Kil~Tl~il~iyrlg~~Iplp-gvd~~~~~~~~~~~~~~~~~   57 (181)
T 3dl8_G           14 LRQKFIFTLLMFVIYRLGSHIPIP-GINPEALRDFLKAFEGSVFA   57 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSSC-CCC---------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHCCCCHHH
T ss_conf             999999999999999985228899-86999999998743553899


No 4  
>>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83)
Probab=51.24  E-value=3.2  Score=18.62  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q ss_conf             588999999999999999998
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFT   22 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~   22 (380)
                      |||+++++++++++..+++..
T Consensus         1 Mkk~li~~~~~~l~~~~~~~~   21 (83)
T 2a3m_A            1 MRKSLFAVMVLALVAAFALPV   21 (83)
T ss_dssp             ---------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHH
T ss_conf             906899999999999998566


No 5  
>>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycosidase, hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* (A:1-419)
Probab=40.99  E-value=10  Score=15.72  Aligned_cols=40  Identities=8%  Similarity=-0.239  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
Q ss_conf             5889999999999999999988552085-8878999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDW-TDFREDFERQATL   42 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~-~~~k~~i~~~~s~   42 (380)
                      |||++..+..++++..+.....|+. || .....+++..+++
T Consensus         1 M~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~l~~~   41 (419)
T 3bmx_A            1 MRPVFPLILSAVLFLSCFFGARQTE-ASASKRAIDANQIVNR   41 (419)
T ss_dssp             --------------------------CHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHC
T ss_conf             9008999999999999984434343-5654240039999980


No 6  
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=26.82  E-value=19  Score=14.10  Aligned_cols=23  Identities=0%  Similarity=-0.176  Sum_probs=9.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCEEEE
Q ss_conf             85887899999999982981999
Q gi|254780954|r   28 DWTDFREDFERQATLIVGKKIAV   50 (380)
Q Consensus        28 d~~~~k~~i~~~~s~~~g~~v~i   50 (380)
                      .|...-..+.+..-+..|.+|.+
T Consensus        47 ~~~~~~~~~v~~~~kk~Gi~Ve~   69 (183)
T 1p99_A           47 SNDTKAWEKVKELAKKDDIDVEI   69 (183)
T ss_dssp             SSCCHHHHHHHHHHGGGTCCEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             98589999999999974987999


No 7  
>>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000} (A:1-117,A:174-211)
Probab=26.78  E-value=28  Score=13.03  Aligned_cols=20  Identities=20%  Similarity=0.175  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q ss_conf             95889999999999999999
Q gi|254780954|r    1 MLRRVLIGLGFLFSVVLVGA   20 (380)
Q Consensus         1 ~mk~ll~~~~~~lvl~~~~~   20 (380)
                      .|||++.++..++++++...
T Consensus         1 ~Mkr~~~~l~~~~ll~~~~~   20 (155)
T 2qgu_A            1 XFKKLLHSLVAGLTFVAAVA   20 (155)
T ss_dssp             --------------------
T ss_pred             CHHHHHHHHHHHHHHHHHHH
T ss_conf             95899999999999999984


No 8  
>>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195)
Probab=25.97  E-value=31  Score=12.79  Aligned_cols=35  Identities=26%  Similarity=0.237  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             588999999999999999998855208588789999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFE   37 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~   37 (380)
                      -||++++++++++..++..+-+| .+|.+.++....
T Consensus         4 ~~Ki~~Tl~~l~i~rlg~~Iplp-Gi~~~~~~~~~~   38 (184)
T 2zjs_Y            4 RQRVLFTLLVLAAYRLGAFIPTP-GVDLDKIQEFLR   38 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCBCT-TBCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHH
T ss_conf             99999999999999996238899-869999999987


No 9  
>>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, HAD superfamily, jaecken disease; 2.09A {Homo sapiens} (A:90-193)
Probab=23.63  E-value=34  Score=12.53  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHH---CCEEEEECCEEEEECCC
Q ss_conf             87899999999982---98199962148997363
Q gi|254780954|r   31 DFREDFERQATLIV---GKKIAVKGGIKIHILPF   61 (380)
Q Consensus        31 ~~k~~i~~~~s~~~---g~~v~i~G~i~~~l~P~   61 (380)
                      ..|..+.+.+.+..   |....|+|.|++.+||.
T Consensus        63 ~iR~k~v~~L~~~F~~~gL~~SIGGQISfDvFP~   96 (104)
T 2amy_A           63 NIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPD   96 (104)
T ss_dssp             CHHHHHHHHHHHHTTTSCEEEEEETTTEEEEEET
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEECC
T ss_conf             5568999999987434550688538974333147


No 10 
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=19.70  E-value=26  Score=13.22  Aligned_cols=41  Identities=15%  Similarity=-0.073  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             58899999999999999999885520858878999999999
Q gi|254780954|r    2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL   42 (380)
Q Consensus         2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~   42 (380)
                      ||+.++++..+++++++++.....+..+....+.......+
T Consensus        25 Mk~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (175)
T 3lay_A           25 MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGG   65 (175)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             66899999999999999973358886436689899878888


Done!