Query gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 380
No_of_seqs 168 out of 631
Neff 9.3
Searched_HMMs 23785
Date Tue May 31 22:45:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgu_A Probable signal peptide 47.2 5.9 0.00025 16.2 1.3 39 1-40 1-42 (211)
2 1w5c_T Cytochrome C-550; photo 43.0 4.1 0.00017 17.1 0.0 17 1-17 1-17 (163)
3 2jep_A Xyloglucanase; family 5 31.2 16 0.00066 13.7 1.4 86 1-97 1-97 (395)
4 2a3m_A COG3005: nitrate/TMAO r 31.0 8.4 0.00035 15.3 0.0 22 2-26 1-22 (130)
5 1z1n_X Sixteen heme cytochrome 27.9 10 0.00043 14.8 0.0 18 3-20 5-22 (560)
6 3dl8_G Preprotein translocase 27.1 21 0.00087 12.9 2.1 38 1-39 14-51 (429)
7 2kse_A Sensor protein QSEC; me 25.2 19 0.0008 13.2 1.0 41 2-42 11-51 (186)
8 3din_C Preprotein translocase 24.3 16 0.00067 13.6 0.5 41 1-42 14-54 (431)
9 3h9i_A Cation efflux system pr 22.3 15 0.00063 13.7 0.0 22 2-23 1-22 (407)
10 1co7_I BPTI, bovine pancreatic 19.1 19 0.00081 13.1 0.0 19 2-20 2-20 (99)
No 1
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum GMI1000}
Probab=47.22 E-value=5.9 Score=16.18 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHH
Q ss_conf 95889999999999999999988552---08588789999999
Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLF---IDWTDFREDFERQA 40 (380)
Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~---~d~~~~k~~i~~~~ 40 (380)
|||+++..+...++++.... ..|.. -++..+-....+++
T Consensus 1 M~k~~~~~l~~~l~~~~~~~-~~~a~a~~~~~~~~V~~~~~~~ 42 (211)
T 2qgu_A 1 MFKKLLHSLVAGLTFVAAVA-AVPAHAQEADAQATVKTAVDDV 42 (211)
T ss_dssp -----------------------------CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 94899999999999999984-5653323148799999999999
No 2
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=42.97 E-value=4.1 Score=17.08 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=11.1
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 95889999999999999
Q gi|254780954|r 1 MLRRVLIGLGFLFSVVL 17 (380)
Q Consensus 1 ~mk~ll~~~~~~lvl~~ 17 (380)
||||+++....++++++
T Consensus 1 m~~~~~~~~~~~~~~~~ 17 (163)
T 1w5c_T 1 MLKKCVWLAVALCLCLW 17 (163)
T ss_dssp -----------------
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 94268999999999999
No 3
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A*
Probab=31.21 E-value=16 Score=13.66 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCCCCCCE
Q ss_conf 95889999999999999999988552085887899999999982981999621489973631799942798268998760
Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKEDGSFE 80 (380)
Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~~~~~~ 80 (380)
||||........+.+++++.++..-+-. .....-..|+-...|+-+.+.+.+..... . .-.+..++.|.
T Consensus 1 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~nlgn~~~~~~~--------~-~~~~~~w~~~~ 69 (395)
T 2jep_A 1 MFKKWKKFGISSLALVLVAAVAFTGWSA--KASAADASQIVSEMGAGWNLGNQLEAAVN--------G-TPNETAWGNPT 69 (395)
T ss_dssp ----------------------------------CCHHHHHHHHCSEEEECSSTTCEET--------T-EECTTTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHCCCCEECCCCCCCCCC--------C-CCCCCCCCCCC
T ss_conf 9247899999999999999998426654--45568999999864882645765457778--------8-98877668875
Q ss_pred -----------EEEEEEEEEEEHHHHHC
Q ss_conf -----------67867999987026524
Q gi|254780954|r 81 -----------SKIEGLSMRAEFLPLLS 97 (380)
Q Consensus 81 -----------~~~~~~~v~i~l~~Ll~ 97 (380)
+-++.+++.+++.....
T Consensus 70 ~t~~~i~~ik~~Gfn~vRipv~w~~~~~ 97 (395)
T 2jep_A 70 VTPELIKKVKAAGFKSIRIPVSYLNNIG 97 (395)
T ss_dssp CCHHHHHHHHHTTCCEEEECCCCGGGBC
T ss_pred CCHHHHHHHHHCCCCEEEEECCHHHHCC
T ss_conf 7599999999839986996256999467
No 4
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=31.02 E-value=8.4 Score=15.26 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999999988552
Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLF 26 (380)
Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~ 26 (380)
|||.|+.++++ ++++++++|..
T Consensus 1 mkk~l~~~~~~---~~~~~~~~p~~ 22 (130)
T 2a3m_A 1 MRKSLFAVMVL---ALVAAFALPVI 22 (130)
T ss_dssp -------------------------
T ss_pred CHHHHHHHHHH---HHHHHHHHHHH
T ss_conf 90499999999---99999998887
No 5
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC; 2.10A {Desulfovibrio gigas}
Probab=27.92 E-value=10 Score=14.75 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999999
Q gi|254780954|r 3 RRVLIGLGFLFSVVLVGA 20 (380)
Q Consensus 3 k~ll~~~~~~lvl~~~~~ 20 (380)
||++.++|++++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (560)
T 1z1n_X 5 KRAARWVGIPCAILFLTV 22 (560)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 478999999999999999
No 6
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=27.08 E-value=21 Score=12.92 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 958899999999999999999885520858878999999
Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQ 39 (380)
Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~ 39 (380)
+.||+++++.++++..++..+-+| .+|++.+++.+...
T Consensus 14 L~~rll~Tl~iL~iy~lg~~IPlp-Gi~~~~~~~~~~~~ 51 (429)
T 3dl8_G 14 LRQKFIFTLLMFVIYRLGSHIPIP-GINPEALRDFLKAF 51 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSSC-CCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHC
T ss_conf 999999999999999986238999-85999999998743
No 7
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=25.23 E-value=19 Score=13.15 Aligned_cols=41 Identities=22% Similarity=0.070 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 58899999999999999999885520858878999999999
Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380)
Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380)
-+||...++++++++++...+..++.-...+.....+++.+
T Consensus 11 r~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~L~~ 51 (186)
T 2kse_A 11 RVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELFDTQLML 51 (186)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHSCCCSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999
No 8
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=24.31 E-value=16 Score=13.59 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 958899999999999999999885520858878999999999
Q gi|254780954|r 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATL 42 (380)
Q Consensus 1 ~mk~ll~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i~~~~s~ 42 (380)
+.||++++++++++..++..+-+| .+|++.+.+.+++....
T Consensus 14 Lr~ri~~Tl~iL~iyr~g~~IPlp-Gid~~~~~~~~~~~~~~ 54 (431)
T 3din_C 14 LRDRIIFTFLALIVFRMGIYIPVP-GLNLEAWGEIFRRIAET 54 (431)
T ss_dssp CSSHHHHHHHHHHHHHHHHSCSSC-CCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHC
T ss_conf 999999999999999973348999-86989999999986512
No 9
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=22.28 E-value=15 Score=13.74 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999999988
Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTV 23 (380)
Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~ 23 (380)
|||+.++++++++..++++.+.
T Consensus 1 mkk~~~~~~~~~~~~~~~~~~~ 22 (407)
T 3h9i_A 1 MKKIALIIGSMIAGGIISAAGF 22 (407)
T ss_dssp ----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9506999999999999999887
No 10
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=19.14 E-value=19 Score=13.11 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5889999999999999999
Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGA 20 (380)
Q Consensus 2 mk~ll~~~~~~lvl~~~~~ 20 (380)
|+||.+.++++++++++.+
T Consensus 2 m~~l~l~~~ll~~~~~~~a 20 (99)
T 1co7_I 2 MSRLCLSVALLVLLGTLAA 20 (99)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 1059999999999999994
Done!