Query gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 380
No_of_seqs 168 out of 631
Neff 9.3
Searched_HMMs 13730
Date Wed Jun 1 10:58:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780954.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f7ua3 d.67.2.1 (A:2-135) Arg 6.2 53 0.0039 9.1 2.6 81 30-119 32-116 (134)
2 d1ewfa1 d.83.1.1 (A:1-217) Bac 6.1 55 0.004 9.0 7.4 35 136-171 55-89 (217)
3 d2onkc1 f.58.1.1 (C:1-252) Mol 5.4 63 0.0046 8.6 5.1 36 2-37 1-43 (252)
4 d2d0oa2 c.55.1.6 (A:1-92,A:255 5.2 66 0.0048 8.5 3.1 15 139-153 68-82 (241)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 4.8 73 0.0053 8.2 2.5 14 14-27 23-36 (37)
6 d1mp1a_ a.188.1.1 (A:) Ser/Arg 4.7 77 0.0056 8.1 2.3 21 27-47 20-40 (111)
7 d1nh2d2 b.56.1.1 (D:55-121) Sm 4.2 89 0.0065 7.7 6.2 44 46-89 4-60 (67)
8 d1v54l_ f.23.6.1 (L:) Mitochon 4.0 93 0.0068 7.6 3.9 26 7-36 18-43 (46)
9 d1v54d_ f.23.1.1 (D:) Mitochon 4.0 94 0.0068 7.6 3.7 41 5-45 84-126 (144)
10 d1ekga_ d.82.2.1 (A:) C-termin 3.9 95 0.0069 7.6 1.3 19 32-50 93-111 (119)
No 1
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.22 E-value=53 Score=9.05 Aligned_cols=81 Identities=9% Similarity=0.073 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHCCEEEEECCEEEEECCCEEEEEEEEEEECCC----CCCCEEEEEEEEEEEEHHHHHCCCCCCCEE
Q ss_conf 8878999999999829819996214899736317999427982689----987606786799998702652497101138
Q gi|254780954|r 30 TDFREDFERQATLIVGKKIAVKGGIKIHILPFPSVFFKDIRIDQKE----DGSFESKIEGLSMRAEFLPLLSGEIRVFDM 105 (380)
Q Consensus 30 ~~~k~~i~~~~s~~~g~~v~i~G~i~~~l~P~p~i~~~~v~i~~~~----~~~~~~~~~~~~v~i~l~~Ll~~~~~i~~i 105 (380)
+-||.+|.+.+++.+|.+..+- ...+.+- +...-+|+.+.-+. +..|.--++ .|..-|...-.|.++
T Consensus 32 D~~R~~Ia~~L~~i~gvd~~~i-~~~le~p--~~~d~GDla~~~p~lk~kgknP~eiA~------ela~~l~~~~~i~~v 102 (134)
T d1f7ua3 32 DLMRNYISQELSKISGVDSSLI-FPALEWT--NTMERGDLLIPIPRLRIKGANPKDLAV------QWAEKFPCGDFLEKV 102 (134)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHH-GGGCEEC--SSGGGCSEEEEGGGGCCTTCCHHHHHH------HHHHTCCCTTTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCHHHH-HHHHHCC--CCCCCCCHHHHHHHHHHCCCCHHHHHH------HHHHHCCCCCCEEEE
T ss_conf 9999999999998709999999-8871079--997664249988999976999899999------999876878865357
Q ss_pred EEECCEEEEEECCC
Q ss_conf 99644899998888
Q gi|254780954|r 106 YIDQPHLNFYLSSK 119 (380)
Q Consensus 106 ~L~~p~i~l~~~~~ 119 (380)
...||.+++..+++
T Consensus 103 ~~~GpFINf~l~~~ 116 (134)
T d1f7ua3 103 EANGPFIQFFFNPQ 116 (134)
T ss_dssp EEETTEEEEEECHH
T ss_pred EEECCEEEEEECHH
T ss_conf 76678578998889
No 2
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.07 E-value=55 Score=8.97 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=15.3
Q ss_pred CEEEEEEEEECCEEEEEECCCCCEEEEEEEEEEECC
Q ss_conf 236534897287899985688817876201566215
Q gi|254780954|r 136 NVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISA 171 (380)
Q Consensus 136 ~~~l~~i~i~~g~i~~~D~~~~~~~~i~~i~l~l~~ 171 (380)
.+.+.++.+.+.++.+... .+-.+.+++.++.++.
T Consensus 55 ~i~I~~~~~~~s~l~~~p~-~gi~~~is~~~~~l~g 89 (217)
T d1ewfa1 55 SMDIREFQLPSSQISMVPN-VGLKFSISNANIKISG 89 (217)
T ss_dssp EEEEEEEECCCEEEEEETT-TEEEEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCEEEECCC-CEEEEEEECCEEEEEE
T ss_conf 5599998458744684599-8699999667299997
No 3
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.43 E-value=63 Score=8.60 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHH
Q ss_conf 58899999999999999999885-------5208588789999
Q gi|254780954|r 2 LRRVLIGLGFLFSVVLVGAFTVP-------LFIDWTDFREDFE 37 (380)
Q Consensus 2 mk~ll~~~~~~lvl~~~~~~~~~-------~~~d~~~~k~~i~ 37 (380)
||.++..+..++..++.....+| .+++++.|+..+.
T Consensus 1 m~l~~~~~l~~~~~~~~~f~~~p~~~~~~~s~~~~~n~~~~~~ 43 (252)
T d2onkc1 1 MRLLFSALLALLSSIILLFVLLPVAATVTLQLFNFDEFLKAAS 43 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 9559999999999999999999999999999739999999983
No 4
>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Probab=5.24 E-value=66 Score=8.49 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=6.1
Q ss_pred EEEEEEECCEEEEEE
Q ss_conf 534897287899985
Q gi|254780954|r 139 LEKIHVKGGRIKIID 153 (380)
Q Consensus 139 l~~i~i~~g~i~~~D 153 (380)
++.++|+.+.-.+-|
T Consensus 68 ~~lIriNEAtPVIGD 82 (241)
T d2d0oa2 68 ISLIRINEATPVIGD 82 (241)
T ss_dssp EEEEEEEECCSEEEE
T ss_pred HHEEEECCCCCCCCC
T ss_conf 013453346773110
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.84 E-value=73 Score=8.23 Aligned_cols=14 Identities=7% Similarity=0.308 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999885520
Q gi|254780954|r 14 SVVLVGAFTVPLFI 27 (380)
Q Consensus 14 vl~~~~~~~~~~~~ 27 (380)
.+.+.+++...||+
T Consensus 23 lifvl~vLFssYfF 36 (37)
T d2axtl1 23 LILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999998704
No 6
>d1mp1a_ a.188.1.1 (A:) Ser/Arg-related nuclear matrix protein srm160 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.66 E-value=77 Score=8.11 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCE
Q ss_conf 085887899999999982981
Q gi|254780954|r 27 IDWTDFREDFERQATLIVGKK 47 (380)
Q Consensus 27 ~d~~~~k~~i~~~~s~~~g~~ 47 (380)
++.+..|+.|.+.+.+.+|.+
T Consensus 20 V~l~~ikpWI~kkI~e~LG~E 40 (111)
T d1mp1a_ 20 VNLEVIKPWITKRVTEILGFE 40 (111)
T ss_dssp SCSGGGHHHHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHHCCC
T ss_conf 289998889999999995861
No 7
>d1nh2d2 b.56.1.1 (D:55-121) Small chain TOA2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.15 E-value=89 Score=7.73 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=20.6
Q ss_pred CEEEEECCE-EEEECCC-EEEEEEEEEEECC-----------CCCCCEEEEEEEEEE
Q ss_conf 819996214-8997363-1799942798268-----------998760678679999
Q gi|254780954|r 46 KKIAVKGGI-KIHILPF-PSVFFKDIRIDQK-----------EDGSFESKIEGLSMR 89 (380)
Q Consensus 46 ~~v~i~G~i-~~~l~P~-p~i~~~~v~i~~~-----------~~~~~~~~~~~~~v~ 89 (380)
-.+++.|++ .+|+--- =++.++++.+.-. .+....+.++++.+-
T Consensus 4 sKltfKG~L~TYRFCDnVWTFiiknv~fk~~~~~~~~~~~g~~~~~~~~~vDkvKIV 60 (67)
T d1nh2d2 4 SKLTVKGNLDTYGFCDDVWTFIVKNCQVTVEDSHRDASQNGSGDSQSVISVDKLRIV 60 (67)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEEEEC-------------CEEEEEEEEEEE
T ss_pred EEEEEEEEECCEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEE
T ss_conf 258997600110003537789995069971345444335666776505860548999
No 8
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.00 E-value=93 Score=7.62 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 999999999999999885520858878999
Q gi|254780954|r 7 IGLGFLFSVVLVGAFTVPLFIDWTDFREDF 36 (380)
Q Consensus 7 ~~~~~~lvl~~~~~~~~~~~~d~~~~k~~i 36 (380)
+-+.+..++..+..+++|+++ .|.++
T Consensus 18 ~rLla~m~~~fGsgfa~PF~i----vRhqL 43 (46)
T d1v54l_ 18 WRLLAMMTLFFGSGFAAPFFI----VRHQL 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHH----HHHHH
T ss_conf 999999999980213442999----99998
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.98 E-value=94 Score=7.60 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999988--5520858878999999999829
Q gi|254780954|r 5 VLIGLGFLFSVVLVGAFTV--PLFIDWTDFREDFERQATLIVG 45 (380)
Q Consensus 5 ll~~~~~~lvl~~~~~~~~--~~~~d~~~~k~~i~~~~s~~~g 45 (380)
+++++++++.+..-..+.- |..++.++-..+.++.++...+
T Consensus 84 ~~i~~s~~i~~~~r~~v~p~~P~T~~~Ewqeaq~erm~~~~~n 126 (144)
T d1v54d_ 84 FFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVA 126 (144)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999997079999888999999999999982789
No 10
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.93 E-value=95 Score=7.56 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCEEEE
Q ss_conf 7899999999982981999
Q gi|254780954|r 32 FREDFERQATLIVGKKIAV 50 (380)
Q Consensus 32 ~k~~i~~~~s~~~g~~v~i 50 (380)
+...+++.+++++|.+|.+
T Consensus 93 L~~~L~~el~~~~g~~v~f 111 (119)
T d1ekga_ 93 LHELLAAELTKALKTKLDL 111 (119)
T ss_dssp HHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHCCCEEE
T ss_conf 9999999999986996576
Done!