RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780954|ref|YP_003065367.1| hypothetical protein
CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
(380 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 49.2 bits (117), Expect = 2e-06
Identities = 75/388 (19%), Positives = 116/388 (29%), Gaps = 178/388 (45%)
Query: 6 LIGLGFL--FSVV--------------LVGAFT-------VPLFI----DWTDFREDFER 38
LIG+ L + V L GA T + I W E F
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSW----ESFFV 294
Query: 39 QATLIVGKKIAVKG----GIKIHI------LPFPSVFFKDIRIDQKEDGSFESKIEGL-S 87
+ A+ G++ + LP PS I D E+ EG+ S
Sbjct: 295 SV------RKAITVLFFIGVRCYEAYPNTSLP-PS-----ILEDSLENN------EGVPS 336
Query: 88 MRAEFLPLLSGEIR-----VFDMYIDQPHLNFYL-SSKGVS----NWFQRKS------TM 131
P+LS I Y+++ N +L + K V N K+
Sbjct: 337 ------PMLS--ISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVN--GAKNLVVSGPPQ 384
Query: 132 DMIH-NVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISP-----LS--ID 183
+ N+ L K G +DQ ++ F S+ L+ S RFL + SP L D
Sbjct: 385 SLYGLNLTLRKAKAPSG----LDQ--SRIPF-SERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 184 SIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAY--------------- 228
I ++ A ++I P+ Y
Sbjct: 438 LINKDLVKNN----------VSFNAK--------DIQI---PV-YDTFDGSDLRVLSGSI 475
Query: 229 -PIIIDL--FGNLFWNEKQPIYSGVFSV--AGDF-----SKLLNLELSAKKSRLSGNFKI 278
I+D + W E + F DF S L L +++
Sbjct: 476 SERIVDCIIRLPVKW-ET----TTQFKATHILDFGPGGASGLGVL---THRNK------- 520
Query: 279 SDGN-VRISRYKLQSILP---NSSTDED 302
DG VR+ I+ + + D+D
Sbjct: 521 -DGTGVRV-------IVAGTLDINPDDD 540
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.2 bits (72), Expect = 0.22
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 306 KVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEEKDNSH 365
+++Q+ E++ + E + + +L+ E+E + K KKD ++ N+++ +
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK---AKKDLEEW--NQRQSEQVEK 133
Query: 366 DKENQENFSGDK 377
+K N N DK
Sbjct: 134 NKIN--NRIADK 143
>1ia5_A Polygalacturonase; glycosylhydrolase; HET: MAN NAG; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*
Length = 339
Score = 28.0 bits (62), Expect = 3.9
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 23/118 (19%)
Query: 100 IRVFDMYIDQPHLNFYLSSKGVSNWFQRKSTMDMIHNVILEKIHV----KGGRIK----- 150
+ V + G+S + + + NV + G RIK
Sbjct: 183 VAVNSGENIYFSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDT 242
Query: 151 -----------IIDQESDQVYFLSDLNLQISARFLNIISPLS---IDSIKGSVIAEGT 194
I + + N ++ P++ +D++ GSV++ GT
Sbjct: 243 TGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGT 300
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 27.7 bits (61), Expect = 4.1
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 294 LPNSSTDEDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQY 353
LP + DE K +L+N + E +K+ K+ D K + Y
Sbjct: 71 LPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEAD--------EATQKQAKDTDKSKAQVTY 122
Query: 354 S 354
S
Sbjct: 123 S 123
>2waq_A DNA-directed RNA polymerase RPO1N subunit; multi-subunit,
transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_A
2pmz_A 3hkz_A
Length = 880
Score = 27.8 bits (61), Expect = 4.7
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%)
Query: 274 GNFKISDGNVRISRYKLQSILPNSSTDEDNKTKVSQDEENLLNFSEN-GAESMHDLNETD 332
G KIS+ + +I + T+ + + G + E
Sbjct: 102 GRVKISEDEIEKYSRIYNAIKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKP 161
Query: 333 FFEEEEKKNKNDDLKKDDIQYSVNKKEEKDNSHDKENQENFSGDKMI 379
+ EE+K L DI+ + K E D + + MI
Sbjct: 162 YNFYEERKEGVAKLTPSDIRERLEKVPESDVEILGYDPTTSRPEWMI 208
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics,
northeast structural genomics consortium, NESG; NMR
{Pseudomonas aeruginosa PAO1} SCOP: b.3.7.1
Length = 170
Score = 27.6 bits (61), Expect = 4.8
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 11 FLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGG 53
F F + G + + + W+ + V K + V G
Sbjct: 119 FDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGS 161
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1
dimer, signaling protein, transport protein; NMR {Rattus
norvegicus}
Length = 117
Score = 27.1 bits (59), Expect = 6.4
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 71 IDQKEDGSFESK---IEGLSMRAEFL--PLLSGEIRVFDMYIDQPHLNFYLSSKGVSNWF 125
+D DG++E + L+++A L + EIR F + G S
Sbjct: 3 VDTNNDGAYEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERL 62
Query: 126 QRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQI 169
+ V+ + G + + D V F SD L +
Sbjct: 63 LSRVA------VLFPALRPGGFQAHYRAERGDLVAFSSDEELTM 100
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative, eukaryotic initiation factor;
2.10A {Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 26.7 bits (58), Expect = 8.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 131 MDMIHNVILEKIHVKGGRIKIIDQ 154
M H+ LE I G ++++DQ
Sbjct: 10 MSKPHHATLESIKYTPGSLRLLDQ 33
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.137 0.387
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,186,416
Number of extensions: 151812
Number of successful extensions: 373
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 19
Length of query: 380
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 286
Effective length of database: 3,414,294
Effective search space: 976488084
Effective search space used: 976488084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)