BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780954|ref|YP_003065367.1| hypothetical protein
CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62]
         (380 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 380

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60
           MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP
Sbjct: 1   MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60

Query: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120
           FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG
Sbjct: 61  FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120

Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180
           VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL
Sbjct: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180

Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240
           SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW
Sbjct: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240

Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD 300
           NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD
Sbjct: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD 300

Query: 301 EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE 360
           EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE
Sbjct: 301 EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE 360

Query: 361 KDNSHDKENQENFSGDKMIL 380
           KDNSHDKENQENFSGDKMIL
Sbjct: 361 KDNSHDKENQENFSGDKMIL 380


>gi|254780470|ref|YP_003064883.1| translation initiation factor IF-1 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 110

 Score = 24.6 bits (52), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 290 LQSILPNS-------STDEDNKTKVSQDEENLLNFSENGAESMHD 327
           +  +LPN+       + D+D+      D +   NFSE+G+ES +D
Sbjct: 13  VSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGND 57


>gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 273

 Score = 24.3 bits (51), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 151 IIDQESDQVYFLSDLNLQISARFLNIISPL 180
           IIDQ++  VY+ S L+L    R + + +PL
Sbjct: 190 IIDQDTYTVYYKSMLHLMHDLRGMGMSNPL 219


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 23.1 bits (48), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 34/143 (23%)

Query: 79  FESKIEGLSMRAEFLP---------LLSGEIRVFDMY-------------IDQPHLNFYL 116
           FESKI G ++  E++P         L SG +  F M              +D   L F +
Sbjct: 529 FESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI 588

Query: 117 SSKGVSNWFQRKSTMDMIHNVILEKIHVKG------------GRIKIIDQESDQVYFLSD 164
           +++        K  + ++  ++  ++ V               R +I  QE+  VY + D
Sbjct: 589 AARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVID 648

Query: 165 LNLQISARFLNIISPLSIDSIKG 187
            ++ +S  F  + S  S+   +G
Sbjct: 649 AHVPLSCMFKYVDSLRSMSQGRG 671


>gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 101

 Score = 22.7 bits (47), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 120 GVSNWFQRKSTMDMIHNVILEKIHV 144
           G+S  F+ +   D++H  I E++H 
Sbjct: 60  GISKTFRHRKIYDLLHKEIKEELHA 84


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.137    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,920
Number of Sequences: 1233
Number of extensions: 11966
Number of successful extensions: 47
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 17
length of query: 380
length of database: 328,796
effective HSP length: 75
effective length of query: 305
effective length of database: 236,321
effective search space: 72077905
effective search space used: 72077905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 39 (19.6 bits)