BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] (380 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780954|ref|YP_003065367.1| hypothetical protein CLIBASIA_04265 [Candidatus Liberibacter asiaticus str. psy62] Length = 380 Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/380 (100%), Positives = 380/380 (100%) Query: 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP Sbjct: 1 MLRRVLIGLGFLFSVVLVGAFTVPLFIDWTDFREDFERQATLIVGKKIAVKGGIKIHILP 60 Query: 61 FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120 FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG Sbjct: 61 FPSVFFKDIRIDQKEDGSFESKIEGLSMRAEFLPLLSGEIRVFDMYIDQPHLNFYLSSKG 120 Query: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL Sbjct: 121 VSNWFQRKSTMDMIHNVILEKIHVKGGRIKIIDQESDQVYFLSDLNLQISARFLNIISPL 180 Query: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW Sbjct: 181 SIDSIKGSVIAEGTGNFDNKRSAFKITANFPAKNKAISLKIQLFPLAYPIIIDLFGNLFW 240 Query: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD 300 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD Sbjct: 241 NEKQPIYSGVFSVAGDFSKLLNLELSAKKSRLSGNFKISDGNVRISRYKLQSILPNSSTD 300 Query: 301 EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE 360 EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE Sbjct: 301 EDNKTKVSQDEENLLNFSENGAESMHDLNETDFFEEEEKKNKNDDLKKDDIQYSVNKKEE 360 Query: 361 KDNSHDKENQENFSGDKMIL 380 KDNSHDKENQENFSGDKMIL Sbjct: 361 KDNSHDKENQENFSGDKMIL 380 >gi|254780470|ref|YP_003064883.1| translation initiation factor IF-1 [Candidatus Liberibacter asiaticus str. psy62] Length = 110 Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Query: 290 LQSILPNS-------STDEDNKTKVSQDEENLLNFSENGAESMHD 327 + +LPN+ + D+D+ D + NFSE+G+ES +D Sbjct: 13 VSELLPNANFRVKLITNDDDSSADCKLDSKVKSNFSESGSESGND 57 >gi|254780322|ref|YP_003064735.1| SAM-dependent methyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 24.3 bits (51), Expect = 3.3, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 151 IIDQESDQVYFLSDLNLQISARFLNIISPL 180 IIDQ++ VY+ S L+L R + + +PL Sbjct: 190 IIDQDTYTVYYKSMLHLMHDLRGMGMSNPL 219 >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 23.1 bits (48), Expect = 9.1, Method: Compositional matrix adjust. Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 34/143 (23%) Query: 79 FESKIEGLSMRAEFLP---------LLSGEIRVFDMY-------------IDQPHLNFYL 116 FESKI G ++ E++P L SG + F M +D L F + Sbjct: 529 FESKIVGGAIPKEYIPGVRKGIESMLSSGPLAGFPMLGMKVTLLDGDYHDVDSSVLAFEI 588 Query: 117 SSKGVSNWFQRKSTMDMIHNVILEKIHVKG------------GRIKIIDQESDQVYFLSD 164 +++ K + ++ ++ ++ V R +I QE+ VY + D Sbjct: 589 AARACFREAASKMGVQLLEPLMKVEVTVPAEYVGDVIGDLSSRRGQIQGQENRSVYVVID 648 Query: 165 LNLQISARFLNIISPLSIDSIKG 187 ++ +S F + S S+ +G Sbjct: 649 AHVPLSCMFKYVDSLRSMSQGRG 671 >gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 Score = 22.7 bits (47), Expect = 9.3, Method: Compositional matrix adjust. Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 120 GVSNWFQRKSTMDMIHNVILEKIHV 144 G+S F+ + D++H I E++H Sbjct: 60 GISKTFRHRKIYDLLHKEIKEELHA 84 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.137 0.387 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 258,920 Number of Sequences: 1233 Number of extensions: 11966 Number of successful extensions: 47 Number of sequences better than 100.0: 16 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 17 length of query: 380 length of database: 328,796 effective HSP length: 75 effective length of query: 305 effective length of database: 236,321 effective search space: 72077905 effective search space used: 72077905 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)