Query gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 127 out of 261
Neff 4.1
Searched_HMMs 23785
Date Tue May 31 22:36:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780955.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nys_A AGR_C_3712P; SSPB, stri 100.0 0 0 430.8 15.5 167 25-204 1-167 (176)
2 2qas_A SSPB, hypothetical prot 100.0 0 0 401.8 14.9 125 22-146 6-130 (157)
3 1yfn_A Stringent starvation pr 98.4 2.7E-06 1.1E-10 60.4 10.9 94 43-143 13-107 (118)
4 1ou8_A Stringent starvation pr 98.4 2.2E-06 9.4E-11 60.9 10.4 94 43-143 12-106 (111)
5 1ou9_A Stringent starvation pr 98.3 5.9E-06 2.5E-10 58.1 10.3 94 43-143 12-106 (129)
6 2wnw_A Activated by transcript 41.5 18 0.00074 16.1 5.2 74 46-130 368-441 (447)
7 2iaf_A Hypothetical protein SD 26.7 5.4 0.00023 19.4 -1.6 63 45-109 75-139 (151)
8 2wvf_A Hpnikr, putative nickel 23.9 34 0.0014 14.2 2.5 61 38-107 39-101 (148)
9 3m95_A Autophagy related prote 23.6 35 0.0015 14.2 2.1 19 76-94 25-43 (125)
10 3fm2_A Uncharacterized protein 23.5 35 0.0015 14.1 4.3 70 44-124 6-77 (135)
11 1ib8_A Conserved protein SP14. 22.4 37 0.0015 14.0 3.3 68 57-128 76-155 (164)
12 1y0n_A Hypothetical UPF0270 pr 22.1 20 0.00084 15.7 0.6 21 29-49 4-24 (78)
13 2zpn_A Autophagy-related prote 21.1 39 0.0016 13.8 2.1 33 76-108 20-54 (119)
14 3h9d_A ATG8, microtubule-assoc 20.9 39 0.0017 13.8 2.0 19 76-94 20-38 (119)
No 1
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2
Probab=100.00 E-value=0 Score=430.82 Aligned_cols=167 Identities=59% Similarity=0.958 Sum_probs=140.7
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCC
Q ss_conf 02210498999999999999999999997089998746999984588887759899963975379984311218076454
Q gi|254780955|r 25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN 104 (204)
Q Consensus 25 M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~ 104 (204)
|++|+|+|++|+++|||||||++|+.|+++|+|||+|||||||+|++|||+||+||+++||+|||||||||||||.|+++
T Consensus 1 m~~d~i~Y~~l~~~alr~vvr~~L~~v~~~G~lpg~hHfYItf~t~~pGV~vP~~l~~~yp~emtiVlq~qf~dL~V~~d 80 (176)
T 2nys_A 1 MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTET 80 (176)
T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEEECHHHHCCEEEECC
T ss_conf 98450479999999999999999999998297998866999997699995889999862984148964555359088546
Q ss_pred EEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999984987668998442420230677530356034676654334445654444456556643344444445556655
Q gi|254780955|r 105 HFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST 184 (204)
Q Consensus 105 ~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (204)
+|||+|||||+|++|+|||+||++|+||||+|||+|+.....+.+..+..... ...........++.
T Consensus 81 ~fsf~lrF~Gvp~~l~IP~~AI~af~dpevgfGL~F~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 147 (176)
T 2nys_A 81 GFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEMEEAEITA-------------YPVSHEAKPASETP 147 (176)
T ss_dssp EEEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC-----------------------------------------
T ss_pred EEEEEEEECCEEEEEEEEHHHEEEEECCCCCCCEECCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC
T ss_conf 58999998996079998757801656767786223288665444445566667-------------77764456777788
Q ss_pred CCCCCCCCCCEEEEEECCCC
Q ss_conf 56665677728983100269
Q gi|254780955|r 185 KKQNKNKMASVISLDNFRKK 204 (204)
Q Consensus 185 ~~~~~~~~aeVVSLD~FRKK 204 (204)
++..++++++|||||+||||
T Consensus 148 ~~~~~k~~~~VVsld~frkK 167 (176)
T 2nys_A 148 KSGEEKKEGSVVSLDAFRKK 167 (176)
T ss_dssp --------------------
T ss_pred CCCCCCCCCCEEEECCCCCC
T ss_conf 88777888988970310268
No 2
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=100.00 E-value=0 Score=401.77 Aligned_cols=125 Identities=45% Similarity=0.779 Sum_probs=118.2
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEE
Q ss_conf 22202210498999999999999999999997089998746999984588887759899963975379984311218076
Q gi|254780955|r 22 DTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKV 101 (204)
Q Consensus 22 ~~~M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V 101 (204)
+..+++|+|+|++|+++|||+|||++|+.|++.+||||+|||||||+|++|||+||+|||++||+|||||||||||||.|
T Consensus 6 ~~~~~~d~i~Y~~l~~~alr~vv~~~L~~v~~~~glpg~hhfyItF~T~~~gV~ip~~l~~~yP~emtIVlQhqf~dL~V 85 (157)
T 2qas_A 6 QTEPPEDLMQYEAMAQDALRGVVKAALKKAAAPGGLPEPHHLYITFKTKAAGVSGPQDLLSKYPDEMTIVLQHQYWDLAP 85 (157)
T ss_dssp ---CCCCTTCHHHHHHHHHHHHHHHHHHHHSSTTCSCTTCCEEEEEETTSTTCBCCHHHHHHSSSEEEEEESSSCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEHHHCCCCEE
T ss_conf 78984231389999999999999999999887379998738999997599996089999961997479984232065256
Q ss_pred CCCEEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCC
Q ss_conf 454799999849876689984424202306775303560346766
Q gi|254780955|r 102 LDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEH 146 (204)
Q Consensus 102 ~~~~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~ 146 (204)
++++|||+|||||+|++|+|||+||++|+||||+|||+|+.....
T Consensus 86 ~~~~fsv~LsF~Gv~~~l~IPf~AI~~f~Dpsv~fGL~Fe~~~~~ 130 (157)
T 2qas_A 86 GETFFSVTLKFGGQPKRLSVPYAALTRFYDPSVQFALQFSAPEII 130 (157)
T ss_dssp CSSEEEEEEEETTEEEEEEEEGGGEEEEEETTTTEEEECSCCC--
T ss_pred ECCEEEEEEEECCEEEEEEEEHHHHHEEECCCCCCCEEECCCCCC
T ss_conf 257799999979987899989688214257557863461787776
No 3
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=98.44 E-value=2.7e-06 Score=60.40 Aligned_cols=94 Identities=12% Similarity=0.252 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
++|....=+..+|+ -=||.-.+.++||.+|....+ -.+|+.-|-.+. .||.++++..+-...|+|++..+.|
T Consensus 13 LiRA~y~W~~Dn~~-----TPyl~Vda~~~~v~VP~~~v~--dg~IvLNIsp~Av~~L~i~nd~IsF~aRF~G~~~~i~v 85 (118)
T 1yfn_A 13 LLRAFYEWLLDNQL-----TPHLVVDVTLPGVQVPMEYAR--DGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSV 85 (118)
T ss_dssp HHHHHHHHHHHTTC-----CEEEEEETTSTTCBSCGGGCB--TTEEEEECSGGGCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCCCCCCCEEEECCEEEEEEEECCCCEEEEE
T ss_conf 79999999976899-----757999938999788978913--98699985820311679837799999998991189998
Q ss_pred EHHHHEEEECCCCCEEEEECCC
Q ss_conf 4424202306775303560346
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDVH 143 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~~ 143 (204)
|+.||.+-+....+-|+-|+..
T Consensus 86 P~~AV~aIyarEnG~Gm~F~~e 107 (118)
T 1yfn_A 86 PLAAVLAIYARENGAGTMFEPE 107 (118)
T ss_dssp EGGGEEEEEETTTCCEEECCCC
T ss_pred EHHHHHHHEECCCCCCEECCCC
T ss_conf 6799522301145886134988
No 4
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=98.43 E-value=2.2e-06 Score=60.89 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
++|....=+..+|+ -=||--+...+||.+|....+ -.+|+.-|-.+. .||.++++..+-.++|||++..+.|
T Consensus 12 LirA~yeW~~Dn~~-----TPyl~Vda~~~~v~VP~~~v~--dg~IvLNisp~Av~~L~i~nd~IsF~aRF~G~~~~i~v 84 (111)
T 1ou8_A 12 LLRAYYDWLVDNSF-----TPYLVVDATYLGVNVPVEYVK--DGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYI 84 (111)
T ss_dssp HHHHHHHHHHHTTC-----CEEEEEETTSTTCBCCGGGCB--TTEEEEECSTTTCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCHHHHCCEEEECCEEEEEEEECCCCEEEEE
T ss_conf 29999999986899-----857999948999808978822--99799986854420778817799999998991189998
Q ss_pred EHHHHEEEECCCCCEEEEECCC
Q ss_conf 4424202306775303560346
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDVH 143 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~~ 143 (204)
|+.||.+-+....+-|+-|+..
T Consensus 85 P~~AV~aIyArEnG~Gm~F~~e 106 (111)
T 1ou8_A 85 PMGAALAIYARENGDGVMFEPE 106 (111)
T ss_dssp EGGGEEEEEETTTCCEEECCCC
T ss_pred EHHHHHEHEECCCCCCEECCCC
T ss_conf 6799413201045885020887
No 5
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=98.32 E-value=5.9e-06 Score=58.13 Aligned_cols=94 Identities=15% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
++|....=+..+|+ -=||--..+.+||.+|....+ -.+|+.-|-.+- .||.++++..+-...|||++..+.|
T Consensus 12 LiRA~yeW~~Dn~~-----TPyl~Vda~~~~v~VP~~~v~--dg~IvLNIsp~Av~~L~i~nd~IsF~aRF~Gv~~~i~v 84 (129)
T 1ou9_A 12 LLRAYYDWLVDNSF-----TPYLVVDATYLGVNVPVEYVK--DGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYI 84 (129)
T ss_dssp HHHHHHHHHHHTTC-----CEEEEEETTSTTCBSCGGGCB--TTEEEEECCTTTCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCHHHHCCEEEECCEEEEEEEECCEEEEEEE
T ss_conf 39999999976899-----867999818999718989861--98699987854320678807789999998993189998
Q ss_pred EHHHHEEEECCCCCEEEEECCC
Q ss_conf 4424202306775303560346
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDVH 143 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~~ 143 (204)
|+.||.+-+....+-|+-|+..
T Consensus 85 P~~AV~aIyarEnG~Gm~F~~e 106 (129)
T 1ou9_A 85 PMGAALAIYARENGDGVMFEPE 106 (129)
T ss_dssp EGGGEEEEEETTTCCEEECCCC
T ss_pred EHHHHEEEEECCCCCCCCCCCC
T ss_conf 7798318001234886313876
No 6
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=41.48 E-value=18 Score=16.07 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=42.8
Q ss_pred HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEEEEECCEEEEEEEEHHH
Q ss_conf 99999997089998746999984588887759899963975379984311218076454799999849876689984424
Q gi|254780955|r 46 VVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNA 125 (204)
Q Consensus 46 ~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~LsF~g~~e~L~IPf~A 125 (204)
-+|...++.= -||.+-. .-.+...+|.....+.. -..++||+-+. ++.-..|+|+++|..-.++||=.|
T Consensus 368 y~~~~fSrfI-rpG~~ri--~~~~~~~~l~~~A~~~p--dg~~viV~~N~------~~~~~~~~l~~~~~~~~~tlPa~S 436 (447)
T 2wnw_A 368 YGIGHFCRYV-RPGARVM--LSSSYDNLLEEVGFVNP--DGERVLVVYNR------DVQERRCRVLDGDKEIALTLPPSG 436 (447)
T ss_dssp HHHHHHHTTC-CTTCEEE--EEEESCTTEEEEEEECT--TSCEEEEEEEC------SSSCEEEEEEETTEEEEEEECTTC
T ss_pred HHHHHHHCCC-CCCCEEE--EEECCCCCEEEEEEECC--CCCEEEEEEEC------CCCCEEEEEEECCEEEEEEECCCE
T ss_conf 9999876405-9997899--70058887589999989--99899999958------899789999989979999989988
Q ss_pred HEEEE
Q ss_conf 20230
Q gi|254780955|r 126 IKGFY 130 (204)
Q Consensus 126 It~F~ 130 (204)
|++|+
T Consensus 437 v~T~v 441 (447)
T 2wnw_A 437 ASTLL 441 (447)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 89999
No 7
>2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, protein structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A
Probab=26.69 E-value=5.4 Score=19.40 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCC--CCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf 999999997089--99874699998458888775989996397537998431121807645479999
Q gi|254780955|r 45 KVVLSEVASIGS--LPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVG 109 (204)
Q Consensus 45 r~~L~~v~~~g~--LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~ 109 (204)
...+..+.+.+. |+|.+ -|.|.....-+-.+......+|+-|+|.+-..=.++.....+|||+
T Consensus 75 ~~~~~~~~~~~~l~l~~~~--~i~f~~~~diif~~~~~l~~HpN~m~f~a~~~~g~~l~~~tyySIG 139 (151)
T 2iaf_A 75 IPRMHEILDSNLLNLAGKK--EIPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIG 139 (151)
T ss_dssp HHHHHHHHHHTEEEETTTE--EEECCHHHHEEEETTCCCSSCSSEEEEEEECTTSCEEEEEEEEECS
T ss_pred HHHHHHHHHCCCEECCCCC--EECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 9999999863925107872--0322566635885575789999855999997999889989999828
No 8
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 2ca9_A 2cad_A* 2caj_A 2wvd_A 2wve_A* 2wvb_A
Probab=23.94 E-value=34 Score=14.19 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEE--EEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEE
Q ss_conf 999999999999999708999874699--9984588887759899963975379984311218076454799
Q gi|254780955|r 38 EALRGLVKVVLSEVASIGSLPGEHHFY--ITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFE 107 (204)
Q Consensus 38 ~Alr~Vvr~~L~~v~~~g~LpG~hHfy--ItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~Fs 107 (204)
+|+|..+|..|..-......+|+++-+ ||..-+|.--.+...|-+ +||.|.++.++..+.-
T Consensus 39 eaIRdair~~l~e~~~~~~~~~~~~~~G~l~vvYdh~~~~l~~~L~~---------iqH~~~~~Iiss~Hvh 101 (148)
T 2wvf_A 39 ELVRDMIREKLVEDNWAEDNPNDESKIAVLVVIYDGGQRELNQRMID---------IQHASGTHVLCTTHIH 101 (148)
T ss_dssp HHHHHHHHHHHHCSSCTTCSCCSCCEEEEEEEEEETTSTTHHHHHHH---------HHHHCSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHH---------HHHHHCCEEEEEEEEE
T ss_conf 99999999999985675236888439999999995673118899999---------9764012599998774
No 9
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori}
Probab=23.61 E-value=35 Score=14.15 Aligned_cols=19 Identities=16% Similarity=0.798 Sum_probs=16.2
Q ss_pred CCHHHHHHCCCEEEEEEEE
Q ss_conf 5989996397537998431
Q gi|254780955|r 76 ISQNLRKNYPEKMTIVIQN 94 (204)
Q Consensus 76 ip~~L~~~yP~emTIVlQh 94 (204)
-+.+++++||+-+-||++-
T Consensus 25 Es~~i~~KyPdrIPVIvE~ 43 (125)
T 3m95_A 25 EGEKIRRKYPDRVPVIVEK 43 (125)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEE
T ss_conf 9999998789977599998
No 10
>3fm2_A Uncharacterized protein, distantly related to A heme binding/degrading HEMS (PF05171)...; YP_324846.1; HET: MSE; 1.80A {Anabaena variabilis atcc 29413}
Probab=23.47 E-value=35 Score=14.13 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=48.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEEEEECCEEEEEEE--
Q ss_conf 999999999708999874699998458888775989996397537998431121807645479999984987668998--
Q gi|254780955|r 44 VKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVI-- 121 (204)
Q Consensus 44 vr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~LsF~g~~e~L~I-- 121 (204)
+++.|..++.-| .+++.|+.+|.++- .+..||.--.-..++-+|.+..++ .|..-|.+..+.+.-.+
T Consensus 6 l~~LL~~l~~~G--------~v~~Iv~n~~~V~E--~~G~~~~~~~~~~~~G~~~~i~~~-~~dlhL~~~~~~~~~~v~~ 74 (135)
T 3fm2_A 6 LKDFLEACETLG--------TLRLIVTSSAAVLE--ARGKIEKLFYAELAKGKYANMHTE-GFEFHLNMEKITQVKFETG 74 (135)
T ss_dssp HHHHHHHGGGGC--------EEEEEEECSSEEEE--EEEESCSCEEEEETTEEEEEEECS-SEEEEEEGGGCCEEEEEEE
T ss_pred HHHHHHHHHHHC--------CEEEEEECCCEEEE--EECCCCCCEECCCCCCCEEEEECC-CCCEEECHHHCCEEEEEEE
T ss_conf 999999858549--------75999967987999--974778705524456525884089-7457972356239999981
Q ss_pred EHH
Q ss_conf 442
Q gi|254780955|r 122 PFN 124 (204)
Q Consensus 122 Pf~ 124 (204)
|+.
T Consensus 75 ~~~ 77 (135)
T 3fm2_A 75 EAK 77 (135)
T ss_dssp ECT
T ss_pred CCC
T ss_conf 356
No 11
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=22.41 E-value=37 Score=14.00 Aligned_cols=68 Identities=9% Similarity=0.244 Sum_probs=43.6
Q ss_pred CCCCCEEEEEEECCCCCCCCCHH----HHHHCCCEEEEEEEE------EE--CCEEECCCEEEEEEEECCEEEEEEEEHH
Q ss_conf 99874699998458888775989----996397537998431------12--1807645479999984987668998442
Q gi|254780955|r 57 LPGEHHFYITFATNARGVRISQN----LRKNYPEKMTIVIQN------QF--WDLKVLDNHFEVGLSFSNVPERLVIPFN 124 (204)
Q Consensus 57 LpG~hHfyItF~T~~~gV~ip~~----L~~~yP~emTIVlQh------qf--~dL~V~~~~FsV~LsF~g~~e~L~IPf~ 124 (204)
+|+ .|+..- ..||+.-|=. .+.---+.+.|-+.. .| .=..|+++.+.+.+.-++..+.+.|||+
T Consensus 76 i~~--~Y~LEV--SSPGldRpL~~~~~f~r~~G~~v~V~l~~~~~~~k~~~G~L~~v~~~~i~l~~~~~~~~~~~~I~~~ 151 (164)
T 1ib8_A 76 FPE--QYFLEI--TSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYS 151 (164)
T ss_dssp CCS--CEEEEE--ECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSS
T ss_pred CCC--CEEEEE--ECCCCCCCCCCHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCEEEEEEHH
T ss_conf 787--579999--6699885437979999865957999996476993899999999749989999923777659997069
Q ss_pred HHEE
Q ss_conf 4202
Q gi|254780955|r 125 AIKG 128 (204)
Q Consensus 125 AIt~ 128 (204)
.|..
T Consensus 152 ~I~k 155 (164)
T 1ib8_A 152 LVSK 155 (164)
T ss_dssp CCSS
T ss_pred HCCE
T ss_conf 8146
No 12
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.291.1.1
Probab=22.08 E-value=20 Score=15.72 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=17.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHH
Q ss_conf 049899999999999999999
Q gi|254780955|r 29 HIRYDILAKEALRGLVKVVLS 49 (204)
Q Consensus 29 li~Y~~l~~~Alr~Vvr~~L~ 49 (204)
+|+|+.|-.++|++++.+-+.
T Consensus 4 iIP~~~L~~etL~~lIeefv~ 24 (78)
T 1y0n_A 4 LIPHDLLEADTLNNLLEDFVT 24 (78)
T ss_dssp ECCGGGSCHHHHHHHHHHHHH
T ss_pred ECCHHHCCHHHHHHHHHHHHH
T ss_conf 667577999999999999984
No 13
>2zpn_A Autophagy-related protein 8; ubiquitin fold, autophagy, cytoplasmic vesicle, lipoprotein, membrane, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 2kq7_A 2kwc_A
Probab=21.07 E-value=39 Score=13.83 Aligned_cols=33 Identities=9% Similarity=0.315 Sum_probs=20.4
Q ss_pred CCHHHHHHCCCEEEEEEEE-EECCEE-ECCCEEEE
Q ss_conf 5989996397537998431-121807-64547999
Q gi|254780955|r 76 ISQNLRKNYPEKMTIVIQN-QFWDLK-VLDNHFEV 108 (204)
Q Consensus 76 ip~~L~~~yP~emTIVlQh-qf~dL~-V~~~~FsV 108 (204)
-+.+++++||+-+-||++- .=.+|. .+...|-|
T Consensus 20 es~~i~~KyPdrIPVIvE~~~~~~lp~ldk~KfLV 54 (119)
T 2zpn_A 20 ESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLV 54 (119)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEE
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEE
T ss_conf 99999997899766999988867886567647973
No 14
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain 3, putative; autophagy, lipidation, ubiquitin-like, structural protein; 2.30A {Trypanosoma brucei}
Probab=20.91 E-value=39 Score=13.80 Aligned_cols=19 Identities=16% Similarity=0.494 Sum_probs=15.8
Q ss_pred CCHHHHHHCCCEEEEEEEE
Q ss_conf 5989996397537998431
Q gi|254780955|r 76 ISQNLRKNYPEKMTIVIQN 94 (204)
Q Consensus 76 ip~~L~~~yP~emTIVlQh 94 (204)
-+.+++++||+-+-||++-
T Consensus 20 es~~i~~KyPdrIPVIvE~ 38 (119)
T 3h9d_A 20 DAAKVRERHPDRLPIICEK 38 (119)
T ss_dssp HHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEE
T ss_conf 9999998789974699998
Done!