Query gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 204
No_of_seqs 127 out of 261
Neff 4.1
Searched_HMMs 13730
Date Wed Jun 1 10:52:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780955.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nysa1 b.136.1.2 (A:3-119) Un 100.0 0 0 404.8 15.5 116 27-142 1-116 (117)
2 d1yfna1 b.136.1.1 (A:4-111) St 98.5 9.5E-07 6.9E-11 61.7 10.6 94 43-143 10-104 (108)
3 d1ou8a_ b.136.1.1 (A:) Stringe 98.4 2E-06 1.5E-10 59.6 10.1 93 43-142 8-101 (106)
4 d2iafa1 d.81.2.1 (A:4-148) L-s 26.3 3.2 0.00023 19.3 -1.6 63 45-109 69-133 (145)
5 d3d32a1 d.15.1.3 (A:1-118) GAB 21.0 23 0.0016 13.8 2.1 19 76-94 19-37 (118)
6 d1y0na_ d.291.1.1 (A:) Hypothe 19.0 15 0.0011 15.0 0.6 21 29-49 4-24 (78)
7 d1chua3 d.168.1.1 (A:238-353) 18.4 13 0.00098 15.3 0.3 73 21-108 37-109 (116)
8 d1xv2a_ d.290.1.1 (A:) Hypothe 18.0 21 0.0015 14.1 1.2 45 86-139 42-86 (232)
9 d3dcxa1 b.55.1.13 (A:9-124) Un 17.3 27 0.002 13.3 2.9 25 111-135 50-75 (116)
10 d2zjda1 d.15.1.3 (A:2-120) Mic 17.1 28 0.002 13.3 2.1 32 77-108 19-53 (119)
No 1
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=100.00 E-value=0 Score=404.78 Aligned_cols=116 Identities=71% Similarity=1.221 Sum_probs=114.3
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEE
Q ss_conf 21049899999999999999999999708999874699998458888775989996397537998431121807645479
Q gi|254780955|r 27 YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHF 106 (204)
Q Consensus 27 ~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~F 106 (204)
+|+|+|++|+++|||+|||++|+.|+++|+|||+|||||||+|++|||+||+|||++||+|||||||||||||+|++++|
T Consensus 1 ~d~i~Y~~lv~~alr~Vvr~~L~~v~~~G~Lpg~hHfyITF~T~~~gV~ip~~L~~~YPeEMTIVlQhqF~dL~V~~~~F 80 (117)
T d2nysa1 1 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGF 80 (117)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEEECCCEECCCEE
T ss_conf 97247899999999999999999999749799984899999749999678999996198715999862234335322638
Q ss_pred EEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECC
Q ss_conf 999984987668998442420230677530356034
Q gi|254780955|r 107 EVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV 142 (204)
Q Consensus 107 sV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~ 142 (204)
||+|||||+||+|+|||+||++|+||||+|||||+.
T Consensus 81 sV~LsF~~~~e~L~IPf~aI~~F~DPsv~FgL~F~~ 116 (117)
T d2nysa1 81 EIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 116 (117)
T ss_dssp EEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCC
T ss_pred EEEEEECCEEEEEEEEHHHHHEECCCCCCEEEEECC
T ss_conf 999970993578994368830123888772897148
No 2
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=98.47 E-value=9.5e-07 Score=61.74 Aligned_cols=94 Identities=12% Similarity=0.252 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
++|....=+..+|+ -=||.-.+..+||.+|....+ -.+|+.-|-.+- .||.++++..|-...|||++..+.|
T Consensus 10 liRA~y~W~~Dn~~-----TPyl~Vda~~~~v~VP~~~v~--dg~IvLNIsp~Av~~L~i~nd~IsF~aRF~G~~~~i~v 82 (108)
T d1yfna1 10 LLRAFYEWLLDNQL-----TPHLVVDVTLPGVQVPMEYAR--DGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSV 82 (108)
T ss_dssp HHHHHHHHHHHTTC-----CEEEEEETTSTTCBSCGGGCB--TTEEEEECSGGGCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCHHHCCCEEECCCEEEEEEEECCEEEEEEE
T ss_conf 39999999987899-----877999948999769979906--98399986832014778807789999998993289998
Q ss_pred EHHHHEEEECCCCCEEEEECCC
Q ss_conf 4424202306775303560346
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDVH 143 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~~ 143 (204)
|+.||.+-+....+-|+-|+..
T Consensus 83 P~~AV~aIyarEnG~Gm~F~~e 104 (108)
T d1yfna1 83 PLAAVLAIYARENGAGTMFEPE 104 (108)
T ss_dssp EGGGEEEEEETTTCCEEECCCC
T ss_pred EHHHHHEEEECCCCCCCCCCCC
T ss_conf 7798413211055887434888
No 3
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=98.37 E-value=2e-06 Score=59.63 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEE-CCEEECCCEEEEEEEECCEEEEEEE
Q ss_conf 999999999970899987469999845888877598999639753799843112-1807645479999984987668998
Q gi|254780955|r 43 LVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVI 121 (204)
Q Consensus 43 Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf-~dL~V~~~~FsV~LsF~g~~e~L~I 121 (204)
++|....=+..+|+ -=||--.+..+||.+|....+ -.+|+.-|-.+- .||.++++..+-...|||++..+.|
T Consensus 8 LiRA~y~W~~Dn~~-----TP~l~Vda~~~~v~VP~~~v~--dg~IvLNisp~Av~~L~i~nd~IsF~aRF~G~~~~i~v 80 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSF-----TPYLVVDATYLGVNVPVEYVK--DGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYI 80 (106)
T ss_dssp HHHHHHHHHHHTTC-----CEEEEEETTSTTCBCCGGGCB--TTEEEEECSTTTCEEEEECSSEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHCCC-----CCEEEEEECCCCCCCCHHHCC--CCEEEEECCHHHHCCEEEECCEEEEEEEECCCCEEEEE
T ss_conf 39999999987899-----876999958998848979906--98399986841110678817799999998990279998
Q ss_pred EHHHHEEEECCCCCEEEEECC
Q ss_conf 442420230677530356034
Q gi|254780955|r 122 PFNAIKGFYDPSVNFELEFDV 142 (204)
Q Consensus 122 Pf~AIt~F~DPSV~FgLqF~~ 142 (204)
|+.||.+-+....+-|+-|+.
T Consensus 81 P~~AV~aIyarEnGqGm~F~~ 101 (106)
T d1ou8a_ 81 PMGAALAIYARENGDGVMFEP 101 (106)
T ss_dssp EGGGEEEEEETTTCCEEECCC
T ss_pred EHHHHHHHEECCCCCCCCCCC
T ss_conf 789964050005588763087
No 4
>d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=26.26 E-value=3.2 Score=19.32 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCC--CCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf 999999997089--99874699998458888775989996397537998431121807645479999
Q gi|254780955|r 45 KVVLSEVASIGS--LPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVG 109 (204)
Q Consensus 45 r~~L~~v~~~g~--LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~ 109 (204)
...+..+.+.+. |+|.|- |.|.....=+-.+......+|+-|++.+-..=-.+..+..+|||+
T Consensus 69 ~~~~~~i~~~~~l~l~~~~~--i~f~~~~di~f~~~~~lp~HpNgm~f~a~d~~g~~l~~~tyySIG 133 (145)
T d2iafa1 69 IPRMHEILDSNLLNLAGKKE--IPFHEATDFLFLQKELLPKHSNGMRFSAFDGNANLLIEQVYYSIG 133 (145)
T ss_dssp HHHHHHHHHHTEEEETTTEE--EECCHHHHEEEETTCCCSSCSSEEEEEEECTTSCEEEEEEEEECS
T ss_pred HHHHHHHHHCCCCCCCCCCC--CCCCCCCCCEECCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECC
T ss_conf 99999998558221255642--334523241221554689999834899997999899999999838
No 5
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.04 E-value=23 Score=13.82 Aligned_cols=19 Identities=21% Similarity=0.807 Sum_probs=15.5
Q ss_pred CCHHHHHHCCCEEEEEEEE
Q ss_conf 5989996397537998431
Q gi|254780955|r 76 ISQNLRKNYPEKMTIVIQN 94 (204)
Q Consensus 76 ip~~L~~~yP~emTIVlQh 94 (204)
-+.+++++||+-+-||++-
T Consensus 19 es~~i~~KyPdriPVIve~ 37 (118)
T d3d32a1 19 EGEKIRKKYPDRVPVIVEK 37 (118)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHCCCCCEEEEEE
T ss_conf 9999998789974599998
No 6
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.97 E-value=15 Score=15.03 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=17.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHH
Q ss_conf 049899999999999999999
Q gi|254780955|r 29 HIRYDILAKEALRGLVKVVLS 49 (204)
Q Consensus 29 li~Y~~l~~~Alr~Vvr~~L~ 49 (204)
+|+|+.|-.++|++++.+-+.
T Consensus 4 iIP~~~L~~etL~~lIeeFv~ 24 (78)
T d1y0na_ 4 LIPHDLLEADTLNNLLEDFVT 24 (78)
T ss_dssp ECCGGGSCHHHHHHHHHHHHH
T ss_pred ECCHHHCCHHHHHHHHHHHHH
T ss_conf 566576999999999999986
No 7
>d1chua3 d.168.1.1 (A:238-353) L-aspartate oxidase {Escherichia coli [TaxId: 562]}
Probab=18.43 E-value=13 Score=15.28 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=41.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEE
Q ss_conf 22220221049899999999999999999999708999874699998458888775989996397537998431121807
Q gi|254780955|r 21 IDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLK 100 (204)
Q Consensus 21 ~~~~M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~ 100 (204)
.+..|. +|+...+-|-|.||.+++..-.+.+ +..+.|+....- -.+.++++||. |.-+-+.+++.
T Consensus 37 GerFm~----~y~~~~eLapRDvvarai~~e~~~~---~~~~v~LD~~~~-----~~~~i~~rfP~---i~~~~~~~GiD 101 (116)
T d1chua3 37 GTRFMP----DFDERGELAPRDIVARAIDHEMKRL---GADCMFLDISHK-----PADFIRQHFPM---IYEKLLGLGID 101 (116)
T ss_dssp SCBCGG----GTCTTGGGSCHHHHHHHHHHHHHHH---TCSCEEEECCSS-----CSHHHHHHCHH---HHHHHHTTTCC
T ss_pred CCCCCC----CCCCCCCCCHHHHHHHHHHHHHHCC---CCCEEEEECCCC-----CHHHHHHHHHH---HHHHHHHCCCC
T ss_conf 961364----7796346007789999999987443---788077760218-----88998721799---99999981999
Q ss_pred ECCCEEEE
Q ss_conf 64547999
Q gi|254780955|r 101 VLDNHFEV 108 (204)
Q Consensus 101 V~~~~FsV 108 (204)
...+-..|
T Consensus 102 ~~~~~IpV 109 (116)
T d1chua3 102 LTQEPVPI 109 (116)
T ss_dssp TTTSCEEE
T ss_pred CCCCCEEE
T ss_conf 87885342
No 8
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus aureus [TaxId: 1280]}
Probab=18.02 E-value=21 Score=14.06 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=28.1
Q ss_pred CEEEEEEEEEECCEEECCCEEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEE
Q ss_conf 537998431121807645479999984987668998442420230677530356
Q gi|254780955|r 86 EKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELE 139 (204)
Q Consensus 86 ~emTIVlQhqf~dL~V~~~~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLq 139 (204)
-||+|+ --+.|-+..+..-.. ++....+||.+++.| .|...+.+.
T Consensus 42 GEmiil-DG~~Yq~~~dG~v~~-------~~~~~~~PFa~vt~f-~p~~~~~~~ 86 (232)
T d1xv2a_ 42 GEVIFL-DGKAYHANEHKEFIE-------LKGDEKVPYASITNF-KASKTFPLQ 86 (232)
T ss_dssp EEEEEE-TTEEEEECTTSCEEE-------CCSCCEESSEEEECC-CCSEEEEEE
T ss_pred EEEEEE-CCEEEEECCCCCEEE-------CCCCCCCCEEEEEEC-CCCEEEECC
T ss_conf 579999-983999738996897-------894456546999963-774587358
No 9
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}
Probab=17.26 E-value=27 Score=13.28 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=17.5
Q ss_pred EECCEEEE-EEEEHHHHEEEECCCCC
Q ss_conf 84987668-99844242023067753
Q gi|254780955|r 111 SFSNVPER-LVIPFNAIKGFYDPSVN 135 (204)
Q Consensus 111 sF~g~~e~-L~IPf~AIt~F~DPSV~ 135 (204)
.+-|++.. ..|||.+|+.|.=-..+
T Consensus 50 g~tGkK~~~~siPY~~I~~~siEtAG 75 (116)
T d3dcxa1 50 GVTGKKVSYHSVPYKAITHFEVETAG 75 (116)
T ss_dssp SSSCCEEEEEEEEGGGEEEEEEECCS
T ss_pred CCCCCEEEEEEEEHHHEEEEEEEECC
T ss_conf 46200589999703686899997075
No 10
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.10 E-value=28 Score=13.26 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=21.5
Q ss_pred CHHHHHHCCCEEEEEEE-EE-ECCEE-ECCCEEEE
Q ss_conf 98999639753799843-11-21807-64547999
Q gi|254780955|r 77 SQNLRKNYPEKMTIVIQ-NQ-FWDLK-VLDNHFEV 108 (204)
Q Consensus 77 p~~L~~~yP~emTIVlQ-hq-f~dL~-V~~~~FsV 108 (204)
+.+++++||+-+-||++ |. -.+|. .+...|-|
T Consensus 19 s~~i~~KyP~riPVIve~~~~~~~lp~Ldk~KfLV 53 (119)
T d2zjda1 19 VRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLV 53 (119)
T ss_dssp HHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEE
T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 99999878996459999877877676456338997
Done!