RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780955|ref|YP_003065368.1| hypothetical protein
CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
          Length = 90

 Score = 30.1 bits (68), Expect = 0.36
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 125 AIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST 184
            +KGF + S  FE E    +   E++++         +P   + NQTN  +Q+    +++
Sbjct: 37  TLKGFQEASKEFENEIKREMAEPEQEVK---------APAELESNQTNEANQEQVDAENS 87

Query: 185 KK 186
            +
Sbjct: 88  PE 89


>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
           beta-component.  In cyanobacteria and plant species,
           sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the
           reduction of sulfite to sulfide.
          Length = 541

 Score = 28.9 bits (65), Expect = 0.86
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 42  GLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPE 86
           G  +  L+E+  +G  PG ++  +    N RG R+ +  R+N  E
Sbjct: 465 GCGRPYLAEIGLVGKAPGRYNLML--GGNRRGQRLPRLYRENITE 507


>gnl|CDD|178990 PRK00369, pyrC, dihydroorotase; Provisional.
          Length = 392

 Score = 27.4 bits (61), Expect = 2.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 41  RGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNL 80
           R L +    E+A++  +    + +IT A+N R VR+++ L
Sbjct: 171 RKLRRNCWYEIAALYYVKDYQNVHITHASNPRTVRLAKEL 210


>gnl|CDD|162469 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
            (type V).  These P-type ATPases form a distinct clade but
            the substrate of their pumping activity has yet to be
            determined. This clade has been designated type V in.
          Length = 1054

 Score = 26.2 bits (58), Expect = 5.5
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 35   LAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQN 94
            L KE    L+  VL  V+S         + IT   N++G    + + KN P    ++   
Sbjct: 968  LEKENFPNLLNTVLFFVSSF-------QYLITAIVNSKGPPFREPIYKNKPFVYLLITGL 1020

Query: 95   QFWDLKVLDNHFEVGLSFSNVP 116
                + +LD H  +G     VP
Sbjct: 1021 GLLLVLLLDPHPLLGKILQIVP 1042


>gnl|CDD|164819 PHA00497, pol, RNA-dependent RNA polymerase.
          Length = 673

 Score = 26.0 bits (57), Expect = 6.5
 Identities = 8/23 (34%), Positives = 10/23 (43%)

Query: 19  KWIDTLMNYDHIRYDILAKEALR 41
             I TLM  D   Y + A+ A  
Sbjct: 432 SVIYTLMVLDATAYHLRAQLACE 454


>gnl|CDD|178632 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
          Length = 803

 Score = 25.9 bits (57), Expect = 7.4
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 25/91 (27%)

Query: 126 IKGFYDPSVNFELEFD--------VHIEHIEEKLEGGN-TGKVLTSPDNFDKNQ------ 170
           IKG YD     E E D          +    EK  G N +    ++ D   K +      
Sbjct: 373 IKGIYD---QIEKEMDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTS 429

Query: 171 -----TNSVS--QDSSKKKSTKKQNKNKMAS 194
                  S+   ++ + KK  K Q K +  S
Sbjct: 430 TKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460


>gnl|CDD|185517 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
          Length = 393

 Score = 25.7 bits (57), Expect = 8.0
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 149 EKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204
           E+L+   T K  T  D+F       + + +SK K  KK+ K   ++V   +  ++ 
Sbjct: 328 ERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEA 383


>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
           Provisional.
          Length = 304

 Score = 25.7 bits (57), Expect = 9.0
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 126 IKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPD 164
           I+GF+D  V+      +  +++ +K +  N    + SPD
Sbjct: 120 IQGFFDGPVDHLFAMPLLADYVRDKYDLDNV--TVVSPD 156


>gnl|CDD|149846 pfam08908, DUF1852, Domain of unknown function (DUF1852).  This
           family of proteins are functionally uncharacterized.
          Length = 322

 Score = 25.7 bits (57), Expect = 9.6
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 67  FATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN 104
           FA  ARG    +NLR     +M   I N+F  L   DN
Sbjct: 30  FANLARGESRQENLRNAL--RM---IDNRFNALAHWDN 62


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0671    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,286,120
Number of extensions: 201176
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 16
Length of query: 204
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,071,361
Effective search space: 468206515
Effective search space used: 468206515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)