RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780955|ref|YP_003065368.1| hypothetical protein CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional. Length = 90 Score = 30.1 bits (68), Expect = 0.36 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 9/62 (14%) Query: 125 AIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST 184 +KGF + S FE E + E++++ +P + NQTN +Q+ +++ Sbjct: 37 TLKGFQEASKEFENEIKREMAEPEQEVK---------APAELESNQTNEANQEQVDAENS 87 Query: 185 KK 186 + Sbjct: 88 PE 89 >gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide. Length = 541 Score = 28.9 bits (65), Expect = 0.86 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 42 GLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPE 86 G + L+E+ +G PG ++ + N RG R+ + R+N E Sbjct: 465 GCGRPYLAEIGLVGKAPGRYNLML--GGNRRGQRLPRLYRENITE 507 >gnl|CDD|178990 PRK00369, pyrC, dihydroorotase; Provisional. Length = 392 Score = 27.4 bits (61), Expect = 2.7 Identities = 12/40 (30%), Positives = 23/40 (57%) Query: 41 RGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNL 80 R L + E+A++ + + +IT A+N R VR+++ L Sbjct: 171 RKLRRNCWYEIAALYYVKDYQNVHITHASNPRTVRLAKEL 210 >gnl|CDD|162469 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054 Score = 26.2 bits (58), Expect = 5.5 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 35 LAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQN 94 L KE L+ VL V+S + IT N++G + + KN P ++ Sbjct: 968 LEKENFPNLLNTVLFFVSSF-------QYLITAIVNSKGPPFREPIYKNKPFVYLLITGL 1020 Query: 95 QFWDLKVLDNHFEVGLSFSNVP 116 + +LD H +G VP Sbjct: 1021 GLLLVLLLDPHPLLGKILQIVP 1042 >gnl|CDD|164819 PHA00497, pol, RNA-dependent RNA polymerase. Length = 673 Score = 26.0 bits (57), Expect = 6.5 Identities = 8/23 (34%), Positives = 10/23 (43%) Query: 19 KWIDTLMNYDHIRYDILAKEALR 41 I TLM D Y + A+ A Sbjct: 432 SVIYTLMVLDATAYHLRAQLACE 454 >gnl|CDD|178632 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional. Length = 803 Score = 25.9 bits (57), Expect = 7.4 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 25/91 (27%) Query: 126 IKGFYDPSVNFELEFD--------VHIEHIEEKLEGGN-TGKVLTSPDNFDKNQ------ 170 IKG YD E E D + EK G N + ++ D K + Sbjct: 373 IKGIYD---QIEKEMDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTS 429 Query: 171 -----TNSVS--QDSSKKKSTKKQNKNKMAS 194 S+ ++ + KK K Q K + S Sbjct: 430 TKGGTAESIPDDEEDAPKKGKKNQKKGRDKS 460 >gnl|CDD|185517 PTZ00217, PTZ00217, flap endonuclease-1; Provisional. Length = 393 Score = 25.7 bits (57), Expect = 8.0 Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 149 EKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204 E+L+ T K T D+F + + +SK K KK+ K ++V + ++ Sbjct: 328 ERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEA 383 >gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase; Provisional. Length = 304 Score = 25.7 bits (57), Expect = 9.0 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Query: 126 IKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPD 164 I+GF+D V+ + +++ +K + N + SPD Sbjct: 120 IQGFFDGPVDHLFAMPLLADYVRDKYDLDNV--TVVSPD 156 >gnl|CDD|149846 pfam08908, DUF1852, Domain of unknown function (DUF1852). This family of proteins are functionally uncharacterized. Length = 322 Score = 25.7 bits (57), Expect = 9.6 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 5/38 (13%) Query: 67 FATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN 104 FA ARG +NLR +M I N+F L DN Sbjct: 30 FANLARGESRQENLRNAL--RM---IDNRFNALAHWDN 62 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0671 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,286,120 Number of extensions: 201176 Number of successful extensions: 348 Number of sequences better than 10.0: 1 Number of HSP's gapped: 348 Number of HSP's successfully gapped: 16 Length of query: 204 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 115 Effective length of database: 4,071,361 Effective search space: 468206515 Effective search space used: 468206515 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.1 bits)